Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16475

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS16465 and HER17_RS16470 are separated by 84 nucleotidesHER17_RS16470 and HER17_RS16475 are separated by 43 nucleotidesHER17_RS16475 and HER17_RS16480 are separated by 88 nucleotides HER17_RS16465: HER17_RS16465 - M20 family metallopeptidase, at 3,715,410 to 3,716,648 _RS16465 HER17_RS16470: HER17_RS16470 - TetR/AcrR family transcriptional regulator, at 3,716,733 to 3,717,434 _RS16470 HER17_RS16475: HER17_RS16475 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,717,478 to 3,718,395 _RS16475 HER17_RS16480: HER17_RS16480 - murein transglycosylase A, at 3,718,484 to 3,719,614 _RS16480 Position (kb) 3717 3718 3719Strain fitness (log2 ratio) -2 -1 0 1 2at 3716.484 kb on + strand, within HER17_RS16465at 3716.485 kb on - strand, within HER17_RS16465at 3716.485 kb on - strand, within HER17_RS16465at 3716.574 kb on + strandat 3716.582 kb on + strandat 3716.603 kb on - strandat 3716.603 kb on - strandat 3716.614 kb on - strandat 3716.676 kb on - strandat 3716.787 kb on - strandat 3716.816 kb on + strand, within HER17_RS16470at 3716.816 kb on + strand, within HER17_RS16470at 3716.842 kb on + strand, within HER17_RS16470at 3716.860 kb on + strand, within HER17_RS16470at 3716.878 kb on + strand, within HER17_RS16470at 3716.878 kb on + strand, within HER17_RS16470at 3716.879 kb on - strand, within HER17_RS16470at 3716.879 kb on - strand, within HER17_RS16470at 3716.879 kb on - strand, within HER17_RS16470at 3716.898 kb on + strand, within HER17_RS16470at 3716.902 kb on - strand, within HER17_RS16470at 3716.902 kb on - strand, within HER17_RS16470at 3716.924 kb on - strand, within HER17_RS16470at 3716.960 kb on - strand, within HER17_RS16470at 3717.092 kb on + strand, within HER17_RS16470at 3717.092 kb on + strand, within HER17_RS16470at 3717.092 kb on + strand, within HER17_RS16470at 3717.092 kb on + strand, within HER17_RS16470at 3717.281 kb on - strand, within HER17_RS16470at 3717.370 kb on + strandat 3717.370 kb on + strandat 3717.370 kb on + strandat 3717.371 kb on - strandat 3717.373 kb on + strandat 3717.373 kb on + strandat 3717.374 kb on - strandat 3717.440 kb on - strandat 3717.443 kb on + strandat 3717.458 kb on + strandat 3717.458 kb on + strandat 3717.458 kb on + strandat 3717.459 kb on - strandat 3717.459 kb on - strandat 3717.459 kb on - strandat 3717.459 kb on - strandat 3717.519 kb on + strandat 3717.528 kb on + strandat 3717.528 kb on + strandat 3717.529 kb on - strandat 3717.529 kb on - strandat 3717.685 kb on + strand, within HER17_RS16475at 3717.686 kb on - strand, within HER17_RS16475at 3717.686 kb on - strand, within HER17_RS16475at 3717.712 kb on + strand, within HER17_RS16475at 3717.712 kb on + strand, within HER17_RS16475at 3717.712 kb on + strand, within HER17_RS16475at 3717.751 kb on + strand, within HER17_RS16475at 3717.751 kb on + strand, within HER17_RS16475at 3717.752 kb on - strand, within HER17_RS16475at 3717.760 kb on + strand, within HER17_RS16475at 3717.808 kb on + strand, within HER17_RS16475at 3717.808 kb on + strand, within HER17_RS16475at 3717.808 kb on + strand, within HER17_RS16475at 3717.808 kb on + strand, within HER17_RS16475at 3717.809 kb on - strand, within HER17_RS16475at 3717.809 kb on - strand, within HER17_RS16475at 3717.809 kb on - strand, within HER17_RS16475at 3717.809 kb on - strand, within HER17_RS16475at 3717.809 kb on - strand, within HER17_RS16475at 3717.809 kb on - strand, within HER17_RS16475at 3717.810 kb on + strand, within HER17_RS16475at 3717.810 kb on + strand, within HER17_RS16475at 3717.810 kb on + strand, within HER17_RS16475at 3717.810 kb on + strand, within HER17_RS16475at 3717.810 kb on + strand, within HER17_RS16475at 3717.811 kb on - strand, within HER17_RS16475at 3717.811 kb on - strand, within HER17_RS16475at 3717.811 kb on - strand, within HER17_RS16475at 3717.841 kb on + strand, within HER17_RS16475at 3717.886 kb on + strand, within HER17_RS16475at 3717.886 kb on + strand, within HER17_RS16475at 3717.886 kb on + strand, within HER17_RS16475at 3717.886 kb on + strand, within HER17_RS16475at 3717.886 kb on + strand, within HER17_RS16475at 3717.888 kb on + strand, within HER17_RS16475at 3717.888 kb on + strand, within HER17_RS16475at 3717.888 kb on + strand, within HER17_RS16475at 3717.889 kb on - strand, within HER17_RS16475at 3717.939 kb on + strand, within HER17_RS16475at 3717.959 kb on - strand, within HER17_RS16475at 3717.959 kb on - strand, within HER17_RS16475at 3717.959 kb on - strand, within HER17_RS16475at 3717.964 kb on - strand, within HER17_RS16475at 3718.119 kb on + strand, within HER17_RS16475at 3718.120 kb on - strand, within HER17_RS16475at 3718.189 kb on - strand, within HER17_RS16475at 3718.196 kb on - strand, within HER17_RS16475at 3718.222 kb on + strand, within HER17_RS16475at 3718.222 kb on + strand, within HER17_RS16475at 3718.222 kb on + strand, within HER17_RS16475at 3718.223 kb on - strand, within HER17_RS16475at 3718.223 kb on - strand, within HER17_RS16475at 3718.223 kb on - strand, within HER17_RS16475at 3718.379 kb on - strandat 3718.379 kb on - strandat 3718.449 kb on + strandat 3718.449 kb on + strandat 3718.450 kb on - strandat 3718.464 kb on - strandat 3718.485 kb on + strandat 3718.503 kb on - strandat 3718.567 kb on - strandat 3718.575 kb on + strandat 3718.576 kb on - strandat 3718.576 kb on - strandat 3718.576 kb on - strandat 3718.576 kb on - strandat 3718.576 kb on - strandat 3718.576 kb on - strandat 3718.617 kb on + strand, within HER17_RS16480at 3718.617 kb on + strand, within HER17_RS16480at 3718.617 kb on + strand, within HER17_RS16480at 3718.617 kb on + strand, within HER17_RS16480at 3718.617 kb on + strand, within HER17_RS16480at 3718.617 kb on + strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.618 kb on - strand, within HER17_RS16480at 3718.621 kb on + strand, within HER17_RS16480at 3718.621 kb on + strand, within HER17_RS16480at 3718.639 kb on + strand, within HER17_RS16480at 3718.683 kb on + strand, within HER17_RS16480at 3718.683 kb on + strand, within HER17_RS16480at 3718.684 kb on - strand, within HER17_RS16480at 3718.699 kb on + strand, within HER17_RS16480at 3718.700 kb on - strand, within HER17_RS16480at 3718.703 kb on + strand, within HER17_RS16480at 3718.703 kb on + strand, within HER17_RS16480at 3718.742 kb on - strand, within HER17_RS16480at 3718.930 kb on + strand, within HER17_RS16480at 3718.930 kb on + strand, within HER17_RS16480at 3718.930 kb on + strand, within HER17_RS16480at 3718.969 kb on + strand, within HER17_RS16480at 3718.975 kb on + strand, within HER17_RS16480at 3718.976 kb on - strand, within HER17_RS16480at 3718.984 kb on - strand, within HER17_RS16480at 3719.007 kb on + strand, within HER17_RS16480at 3719.047 kb on + strand, within HER17_RS16480at 3719.048 kb on - strand, within HER17_RS16480at 3719.048 kb on - strand, within HER17_RS16480at 3719.049 kb on + strand, within HER17_RS16480at 3719.049 kb on + strand, within HER17_RS16480at 3719.050 kb on - strand, within HER17_RS16480at 3719.050 kb on - strand, within HER17_RS16480at 3719.050 kb on - strand, within HER17_RS16480at 3719.050 kb on - strand, within HER17_RS16480at 3719.136 kb on + strand, within HER17_RS16480at 3719.136 kb on + strand, within HER17_RS16480at 3719.136 kb on + strand, within HER17_RS16480at 3719.136 kb on + strand, within HER17_RS16480at 3719.193 kb on + strand, within HER17_RS16480at 3719.193 kb on + strand, within HER17_RS16480at 3719.193 kb on + strand, within HER17_RS16480at 3719.193 kb on + strand, within HER17_RS16480at 3719.193 kb on + strand, within HER17_RS16480at 3719.194 kb on - strand, within HER17_RS16480at 3719.195 kb on + strand, within HER17_RS16480at 3719.195 kb on + strand, within HER17_RS16480at 3719.196 kb on - strand, within HER17_RS16480at 3719.241 kb on - strand, within HER17_RS16480at 3719.250 kb on + strand, within HER17_RS16480at 3719.251 kb on - strand, within HER17_RS16480at 3719.251 kb on - strand, within HER17_RS16480at 3719.383 kb on + strand, within HER17_RS16480at 3719.383 kb on + strand, within HER17_RS16480at 3719.383 kb on + strand, within HER17_RS16480at 3719.384 kb on - strand, within HER17_RS16480at 3719.394 kb on + strand, within HER17_RS16480

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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3,716,484 + HER17_RS16465 0.87 +0.2
3,716,485 - HER17_RS16465 0.87 -0.3
3,716,485 - HER17_RS16465 0.87 +2.0
3,716,574 + +0.0
3,716,582 + -0.3
3,716,603 - -0.1
3,716,603 - -0.1
3,716,614 - +0.7
3,716,676 - -0.1
3,716,787 - -0.1
3,716,816 + HER17_RS16470 0.12 -0.5
3,716,816 + HER17_RS16470 0.12 +0.1
3,716,842 + HER17_RS16470 0.16 -0.3
3,716,860 + HER17_RS16470 0.18 +0.8
3,716,878 + HER17_RS16470 0.21 +2.2
3,716,878 + HER17_RS16470 0.21 -0.3
3,716,879 - HER17_RS16470 0.21 -0.6
3,716,879 - HER17_RS16470 0.21 -0.0
3,716,879 - HER17_RS16470 0.21 -0.4
3,716,898 + HER17_RS16470 0.24 -1.3
3,716,902 - HER17_RS16470 0.24 +0.4
3,716,902 - HER17_RS16470 0.24 -0.3
3,716,924 - HER17_RS16470 0.27 -0.4
3,716,960 - HER17_RS16470 0.32 -1.9
3,717,092 + HER17_RS16470 0.51 -0.0
3,717,092 + HER17_RS16470 0.51 -1.2
3,717,092 + HER17_RS16470 0.51 -0.6
3,717,092 + HER17_RS16470 0.51 -1.6
3,717,281 - HER17_RS16470 0.78 +0.5
3,717,370 + -1.6
3,717,370 + -0.3
3,717,370 + +0.3
3,717,371 - +1.4
3,717,373 + -0.0
3,717,373 + -0.0
3,717,374 - -0.1
3,717,440 - -0.0
3,717,443 + +0.8
3,717,458 + -1.7
3,717,458 + +0.6
3,717,458 + -1.0
3,717,459 - -0.2
3,717,459 - +1.2
3,717,459 - -0.4
3,717,459 - +0.1
3,717,519 + +0.0
3,717,528 + +0.1
3,717,528 + -1.0
3,717,529 - +2.0
3,717,529 - -1.0
3,717,685 + HER17_RS16475 0.23 -0.1
3,717,686 - HER17_RS16475 0.23 -0.5
3,717,686 - HER17_RS16475 0.23 +0.8
3,717,712 + HER17_RS16475 0.25 -0.4
3,717,712 + HER17_RS16475 0.25 +0.2
3,717,712 + HER17_RS16475 0.25 +0.6
3,717,751 + HER17_RS16475 0.30 +0.0
3,717,751 + HER17_RS16475 0.30 -0.5
3,717,752 - HER17_RS16475 0.30 -0.1
3,717,760 + HER17_RS16475 0.31 -0.4
3,717,808 + HER17_RS16475 0.36 -0.5
3,717,808 + HER17_RS16475 0.36 -1.4
3,717,808 + HER17_RS16475 0.36 -0.0
3,717,808 + HER17_RS16475 0.36 +1.0
3,717,809 - HER17_RS16475 0.36 +0.3
3,717,809 - HER17_RS16475 0.36 +0.1
3,717,809 - HER17_RS16475 0.36 +0.5
3,717,809 - HER17_RS16475 0.36 -0.2
3,717,809 - HER17_RS16475 0.36 +1.0
3,717,809 - HER17_RS16475 0.36 -0.3
3,717,810 + HER17_RS16475 0.36 -0.2
3,717,810 + HER17_RS16475 0.36 +0.2
3,717,810 + HER17_RS16475 0.36 -0.9
3,717,810 + HER17_RS16475 0.36 -1.5
3,717,810 + HER17_RS16475 0.36 +0.4
3,717,811 - HER17_RS16475 0.36 -0.3
3,717,811 - HER17_RS16475 0.36 +0.1
3,717,811 - HER17_RS16475 0.36 +0.5
3,717,841 + HER17_RS16475 0.40 +0.0
3,717,886 + HER17_RS16475 0.44 +0.5
3,717,886 + HER17_RS16475 0.44 -0.2
3,717,886 + HER17_RS16475 0.44 +0.2
3,717,886 + HER17_RS16475 0.44 +0.2
3,717,886 + HER17_RS16475 0.44 -0.2
3,717,888 + HER17_RS16475 0.45 +1.0
3,717,888 + HER17_RS16475 0.45 +0.2
3,717,888 + HER17_RS16475 0.45 -0.1
3,717,889 - HER17_RS16475 0.45 +0.4
3,717,939 + HER17_RS16475 0.50 -0.4
3,717,959 - HER17_RS16475 0.52 +0.8
3,717,959 - HER17_RS16475 0.52 -1.3
3,717,959 - HER17_RS16475 0.52 +0.1
3,717,964 - HER17_RS16475 0.53 +0.1
3,718,119 + HER17_RS16475 0.70 +0.1
3,718,120 - HER17_RS16475 0.70 +0.6
3,718,189 - HER17_RS16475 0.77 -0.3
3,718,196 - HER17_RS16475 0.78 -0.4
3,718,222 + HER17_RS16475 0.81 +0.1
3,718,222 + HER17_RS16475 0.81 +0.2
3,718,222 + HER17_RS16475 0.81 -0.2
3,718,223 - HER17_RS16475 0.81 -0.0
3,718,223 - HER17_RS16475 0.81 +0.4
3,718,223 - HER17_RS16475 0.81 -0.4
3,718,379 - -0.3
3,718,379 - +0.4
3,718,449 + +0.8
3,718,449 + -0.7
3,718,450 - -0.1
3,718,464 - -1.5
3,718,485 + -0.0
3,718,503 - +0.1
3,718,567 - -0.1
3,718,575 + +1.4
3,718,576 - -0.5
3,718,576 - +0.7
3,718,576 - -0.2
3,718,576 - -0.1
3,718,576 - +0.5
3,718,576 - +0.2
3,718,617 + HER17_RS16480 0.12 +0.1
3,718,617 + HER17_RS16480 0.12 +0.1
3,718,617 + HER17_RS16480 0.12 +0.7
3,718,617 + HER17_RS16480 0.12 +0.2
3,718,617 + HER17_RS16480 0.12 -0.3
3,718,617 + HER17_RS16480 0.12 +0.9
3,718,618 - HER17_RS16480 0.12 -0.5
3,718,618 - HER17_RS16480 0.12 +0.0
3,718,618 - HER17_RS16480 0.12 +0.8
3,718,618 - HER17_RS16480 0.12 -0.7
3,718,618 - HER17_RS16480 0.12 +1.0
3,718,618 - HER17_RS16480 0.12 -0.7
3,718,618 - HER17_RS16480 0.12 -0.1
3,718,618 - HER17_RS16480 0.12 -0.4
3,718,618 - HER17_RS16480 0.12 +0.8
3,718,621 + HER17_RS16480 0.12 -0.3
3,718,621 + HER17_RS16480 0.12 -0.6
3,718,639 + HER17_RS16480 0.14 +0.3
3,718,683 + HER17_RS16480 0.18 -1.1
3,718,683 + HER17_RS16480 0.18 -0.5
3,718,684 - HER17_RS16480 0.18 +0.1
3,718,699 + HER17_RS16480 0.19 -1.3
3,718,700 - HER17_RS16480 0.19 +0.8
3,718,703 + HER17_RS16480 0.19 -0.1
3,718,703 + HER17_RS16480 0.19 +0.3
3,718,742 - HER17_RS16480 0.23 +0.7
3,718,930 + HER17_RS16480 0.39 -0.5
3,718,930 + HER17_RS16480 0.39 -1.4
3,718,930 + HER17_RS16480 0.39 +0.0
3,718,969 + HER17_RS16480 0.43 -0.4
3,718,975 + HER17_RS16480 0.43 -0.1
3,718,976 - HER17_RS16480 0.44 +0.2
3,718,984 - HER17_RS16480 0.44 +0.5
3,719,007 + HER17_RS16480 0.46 -0.0
3,719,047 + HER17_RS16480 0.50 -1.1
3,719,048 - HER17_RS16480 0.50 -0.3
3,719,048 - HER17_RS16480 0.50 -0.1
3,719,049 + HER17_RS16480 0.50 -0.4
3,719,049 + HER17_RS16480 0.50 +0.8
3,719,050 - HER17_RS16480 0.50 +0.5
3,719,050 - HER17_RS16480 0.50 +0.7
3,719,050 - HER17_RS16480 0.50 -0.1
3,719,050 - HER17_RS16480 0.50 +0.4
3,719,136 + HER17_RS16480 0.58 -2.5
3,719,136 + HER17_RS16480 0.58 -0.0
3,719,136 + HER17_RS16480 0.58 +0.8
3,719,136 + HER17_RS16480 0.58 +0.3
3,719,193 + HER17_RS16480 0.63 -1.3
3,719,193 + HER17_RS16480 0.63 +0.5
3,719,193 + HER17_RS16480 0.63 +0.3
3,719,193 + HER17_RS16480 0.63 -0.5
3,719,193 + HER17_RS16480 0.63 +0.0
3,719,194 - HER17_RS16480 0.63 -0.5
3,719,195 + HER17_RS16480 0.63 +1.0
3,719,195 + HER17_RS16480 0.63 +0.2
3,719,196 - HER17_RS16480 0.63 -0.2
3,719,241 - HER17_RS16480 0.67 -0.3
3,719,250 + HER17_RS16480 0.68 +0.6
3,719,251 - HER17_RS16480 0.68 -0.0
3,719,251 - HER17_RS16480 0.68 +0.4
3,719,383 + HER17_RS16480 0.79 -1.0
3,719,383 + HER17_RS16480 0.79 +0.5
3,719,383 + HER17_RS16480 0.79 -1.1
3,719,384 - HER17_RS16480 0.80 +0.1
3,719,394 + HER17_RS16480 0.80 +1.0

Or see this region's nucleotide sequence