Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11515

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS11500 and HER17_RS11505 are separated by 90 nucleotidesHER17_RS11505 and HER17_RS11510 are separated by 43 nucleotidesHER17_RS11510 and HER17_RS11515 are separated by 95 nucleotidesHER17_RS11515 and HER17_RS11520 are separated by 2 nucleotides HER17_RS11500: HER17_RS11500 - pheST operon leader peptide PheM, at 2,556,353 to 2,556,397 _RS11500 HER17_RS11505: HER17_RS11505 - 50S ribosomal protein L20, at 2,556,488 to 2,556,844 _RS11505 HER17_RS11510: HER17_RS11510 - 50S ribosomal protein L35, at 2,556,888 to 2,557,085 _RS11510 HER17_RS11515: HER17_RS11515 - translation initiation factor IF-3, at 2,557,181 to 2,557,723 _RS11515 HER17_RS11520: HER17_RS11520 - threonine--tRNA ligase, at 2,557,726 to 2,559,654 _RS11520 Position (kb) 2557 2558Strain fitness (log2 ratio) -1 0 1at 2556.386 kb on - strand, within HER17_RS11500at 2556.398 kb on - strandat 2556.398 kb on - strandat 2556.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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2,556,386 - HER17_RS11500 0.73 -0.6
2,556,398 - -1.0
2,556,398 - +0.4
2,556,398 - -0.1

Or see this region's nucleotide sequence