Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06210

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS06200 and HER17_RS06205 are separated by 39 nucleotidesHER17_RS06205 and HER17_RS06210 are separated by 143 nucleotidesHER17_RS06210 and HER17_RS06220 are separated by 201 nucleotides HER17_RS06200: HER17_RS06200 - FMN-dependent NADH-azoreductase, at 1,375,054 to 1,375,674 _RS06200 HER17_RS06205: HER17_RS06205 - YciI family protein, at 1,375,714 to 1,376,022 _RS06205 HER17_RS06210: HER17_RS06210 - discoidin domain-containing protein, at 1,376,166 to 1,378,211 _RS06210 HER17_RS06220: HER17_RS06220 - linear amide C-N hydrolase, at 1,378,413 to 1,379,555 _RS06220 Position (kb) 1376 1377 1378 1379Strain fitness (log2 ratio) -2 -1 0 1 2at 1375.194 kb on - strand, within HER17_RS06200at 1375.202 kb on + strand, within HER17_RS06200at 1375.203 kb on - strand, within HER17_RS06200at 1375.235 kb on + strand, within HER17_RS06200at 1375.235 kb on + strand, within HER17_RS06200at 1375.235 kb on + strand, within HER17_RS06200at 1375.343 kb on - strand, within HER17_RS06200at 1375.410 kb on + strand, within HER17_RS06200at 1375.414 kb on + strand, within HER17_RS06200at 1375.414 kb on + strand, within HER17_RS06200at 1375.440 kb on - strand, within HER17_RS06200at 1375.486 kb on + strand, within HER17_RS06200at 1375.486 kb on + strand, within HER17_RS06200at 1375.488 kb on + strand, within HER17_RS06200at 1375.488 kb on + strand, within HER17_RS06200at 1375.491 kb on + strand, within HER17_RS06200at 1375.491 kb on + strand, within HER17_RS06200at 1375.491 kb on + strand, within HER17_RS06200at 1375.505 kb on + strand, within HER17_RS06200at 1375.505 kb on + strand, within HER17_RS06200at 1375.567 kb on - strand, within HER17_RS06200at 1375.668 kb on - strandat 1375.680 kb on - strandat 1375.682 kb on - strandat 1375.741 kb on - strandat 1375.804 kb on - strand, within HER17_RS06205at 1375.860 kb on + strand, within HER17_RS06205at 1375.861 kb on - strand, within HER17_RS06205at 1375.949 kb on + strand, within HER17_RS06205at 1376.020 kb on + strandat 1376.032 kb on - strandat 1376.037 kb on + strandat 1376.038 kb on - strandat 1376.043 kb on - strandat 1376.081 kb on - strandat 1376.148 kb on + strandat 1376.191 kb on + strandat 1376.225 kb on + strandat 1376.226 kb on - strandat 1376.226 kb on - strandat 1376.247 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.296 kb on - strandat 1376.346 kb on + strandat 1376.346 kb on + strandat 1376.347 kb on - strandat 1376.381 kb on + strand, within HER17_RS06210at 1376.382 kb on - strand, within HER17_RS06210at 1376.421 kb on + strand, within HER17_RS06210at 1376.460 kb on + strand, within HER17_RS06210at 1376.501 kb on + strand, within HER17_RS06210at 1376.502 kb on - strand, within HER17_RS06210at 1376.502 kb on - strand, within HER17_RS06210at 1376.579 kb on + strand, within HER17_RS06210at 1376.579 kb on + strand, within HER17_RS06210at 1376.650 kb on - strand, within HER17_RS06210at 1376.650 kb on - strand, within HER17_RS06210at 1376.672 kb on + strand, within HER17_RS06210at 1376.672 kb on + strand, within HER17_RS06210at 1376.672 kb on + strand, within HER17_RS06210at 1376.674 kb on + strand, within HER17_RS06210at 1376.675 kb on - strand, within HER17_RS06210at 1376.675 kb on - strand, within HER17_RS06210at 1376.796 kb on + strand, within HER17_RS06210at 1376.818 kb on - strand, within HER17_RS06210at 1376.840 kb on - strand, within HER17_RS06210at 1376.842 kb on + strand, within HER17_RS06210at 1376.842 kb on + strand, within HER17_RS06210at 1376.847 kb on - strand, within HER17_RS06210at 1376.909 kb on + strand, within HER17_RS06210at 1376.909 kb on + strand, within HER17_RS06210at 1376.910 kb on - strand, within HER17_RS06210at 1376.958 kb on - strand, within HER17_RS06210at 1376.959 kb on + strand, within HER17_RS06210at 1376.960 kb on - strand, within HER17_RS06210at 1376.981 kb on + strand, within HER17_RS06210at 1376.981 kb on + strand, within HER17_RS06210at 1376.982 kb on - strand, within HER17_RS06210at 1376.982 kb on - strand, within HER17_RS06210at 1376.984 kb on - strand, within HER17_RS06210at 1377.097 kb on - strand, within HER17_RS06210at 1377.097 kb on - strand, within HER17_RS06210at 1377.097 kb on - strand, within HER17_RS06210at 1377.210 kb on - strand, within HER17_RS06210at 1377.262 kb on + strand, within HER17_RS06210at 1377.262 kb on + strand, within HER17_RS06210at 1377.263 kb on - strand, within HER17_RS06210at 1377.263 kb on - strand, within HER17_RS06210at 1377.314 kb on - strand, within HER17_RS06210at 1377.314 kb on - strand, within HER17_RS06210at 1377.314 kb on - strand, within HER17_RS06210at 1377.353 kb on + strand, within HER17_RS06210at 1377.354 kb on - strand, within HER17_RS06210at 1377.362 kb on + strand, within HER17_RS06210at 1377.363 kb on - strand, within HER17_RS06210at 1377.363 kb on - strand, within HER17_RS06210at 1377.435 kb on + strand, within HER17_RS06210at 1377.436 kb on - strand, within HER17_RS06210at 1377.500 kb on + strand, within HER17_RS06210at 1377.501 kb on - strand, within HER17_RS06210at 1377.502 kb on + strand, within HER17_RS06210at 1377.502 kb on + strand, within HER17_RS06210at 1377.502 kb on + strand, within HER17_RS06210at 1377.503 kb on - strand, within HER17_RS06210at 1377.503 kb on - strand, within HER17_RS06210at 1377.503 kb on - strand, within HER17_RS06210at 1377.503 kb on - strand, within HER17_RS06210at 1377.506 kb on + strand, within HER17_RS06210at 1377.506 kb on + strand, within HER17_RS06210at 1377.507 kb on - strand, within HER17_RS06210at 1377.507 kb on - strand, within HER17_RS06210at 1377.507 kb on - strand, within HER17_RS06210at 1377.507 kb on - strand, within HER17_RS06210at 1377.589 kb on + strand, within HER17_RS06210at 1377.589 kb on + strand, within HER17_RS06210at 1377.595 kb on + strand, within HER17_RS06210at 1377.611 kb on + strand, within HER17_RS06210at 1377.611 kb on + strand, within HER17_RS06210at 1377.611 kb on + strand, within HER17_RS06210at 1377.611 kb on + strand, within HER17_RS06210at 1377.612 kb on - strand, within HER17_RS06210at 1377.612 kb on - strand, within HER17_RS06210at 1377.612 kb on - strand, within HER17_RS06210at 1377.612 kb on - strand, within HER17_RS06210at 1377.612 kb on - strand, within HER17_RS06210at 1377.621 kb on + strand, within HER17_RS06210at 1377.723 kb on - strand, within HER17_RS06210at 1377.723 kb on - strand, within HER17_RS06210at 1377.777 kb on + strand, within HER17_RS06210at 1377.778 kb on - strand, within HER17_RS06210at 1377.797 kb on + strand, within HER17_RS06210at 1377.797 kb on + strand, within HER17_RS06210at 1377.798 kb on - strand, within HER17_RS06210at 1377.798 kb on - strand, within HER17_RS06210at 1377.798 kb on - strand, within HER17_RS06210at 1377.799 kb on + strand, within HER17_RS06210at 1377.809 kb on + strand, within HER17_RS06210at 1377.917 kb on + strand, within HER17_RS06210at 1377.941 kb on - strand, within HER17_RS06210at 1377.941 kb on - strand, within HER17_RS06210at 1378.018 kb on + strandat 1378.019 kb on - strandat 1378.109 kb on + strandat 1378.109 kb on + strandat 1378.121 kb on + strandat 1378.121 kb on + strandat 1378.121 kb on + strandat 1378.121 kb on + strandat 1378.122 kb on - strandat 1378.218 kb on + strandat 1378.287 kb on + strandat 1378.294 kb on + strandat 1378.350 kb on + strandat 1378.366 kb on + strandat 1378.545 kb on - strand, within HER17_RS06220at 1378.545 kb on - strand, within HER17_RS06220at 1378.594 kb on + strand, within HER17_RS06220at 1378.643 kb on + strand, within HER17_RS06220at 1378.672 kb on + strand, within HER17_RS06220at 1378.693 kb on - strand, within HER17_RS06220at 1378.698 kb on - strand, within HER17_RS06220at 1378.714 kb on - strand, within HER17_RS06220at 1378.793 kb on - strand, within HER17_RS06220at 1378.885 kb on - strand, within HER17_RS06220at 1378.910 kb on + strand, within HER17_RS06220at 1378.924 kb on + strand, within HER17_RS06220at 1378.931 kb on + strand, within HER17_RS06220at 1378.931 kb on + strand, within HER17_RS06220at 1378.934 kb on + strand, within HER17_RS06220at 1378.934 kb on + strand, within HER17_RS06220at 1378.935 kb on - strand, within HER17_RS06220at 1378.935 kb on - strand, within HER17_RS06220at 1378.952 kb on + strand, within HER17_RS06220at 1378.964 kb on - strand, within HER17_RS06220at 1378.970 kb on + strand, within HER17_RS06220at 1378.970 kb on + strand, within HER17_RS06220at 1379.118 kb on - strand, within HER17_RS06220at 1379.128 kb on + strand, within HER17_RS06220at 1379.128 kb on + strand, within HER17_RS06220at 1379.128 kb on + strand, within HER17_RS06220at 1379.128 kb on + strand, within HER17_RS06220at 1379.129 kb on - strand, within HER17_RS06220at 1379.129 kb on - strand, within HER17_RS06220at 1379.129 kb on - strand, within HER17_RS06220at 1379.129 kb on - strand, within HER17_RS06220at 1379.129 kb on - strand, within HER17_RS06220at 1379.129 kb on - strand, within HER17_RS06220at 1379.151 kb on + strand, within HER17_RS06220at 1379.151 kb on + strand, within HER17_RS06220at 1379.152 kb on - strand, within HER17_RS06220at 1379.183 kb on + strand, within HER17_RS06220

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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1,375,194 - HER17_RS06200 0.23 +0.9
1,375,202 + HER17_RS06200 0.24 +0.5
1,375,203 - HER17_RS06200 0.24 +1.7
1,375,235 + HER17_RS06200 0.29 -0.3
1,375,235 + HER17_RS06200 0.29 +0.3
1,375,235 + HER17_RS06200 0.29 +0.9
1,375,343 - HER17_RS06200 0.47 -0.4
1,375,410 + HER17_RS06200 0.57 +0.5
1,375,414 + HER17_RS06200 0.58 +1.3
1,375,414 + HER17_RS06200 0.58 +0.5
1,375,440 - HER17_RS06200 0.62 +0.0
1,375,486 + HER17_RS06200 0.70 -0.1
1,375,486 + HER17_RS06200 0.70 +0.6
1,375,488 + HER17_RS06200 0.70 +0.4
1,375,488 + HER17_RS06200 0.70 +0.4
1,375,491 + HER17_RS06200 0.70 -0.3
1,375,491 + HER17_RS06200 0.70 -0.0
1,375,491 + HER17_RS06200 0.70 +0.2
1,375,505 + HER17_RS06200 0.73 +0.4
1,375,505 + HER17_RS06200 0.73 +0.1
1,375,567 - HER17_RS06200 0.83 +0.7
1,375,668 - -0.1
1,375,680 - -0.5
1,375,682 - +0.3
1,375,741 - +1.5
1,375,804 - HER17_RS06205 0.29 -0.1
1,375,860 + HER17_RS06205 0.47 -0.5
1,375,861 - HER17_RS06205 0.48 +0.3
1,375,949 + HER17_RS06205 0.76 +0.3
1,376,020 + +0.2
1,376,032 - +0.9
1,376,037 + +0.8
1,376,038 - +1.9
1,376,043 - +1.0
1,376,081 - -0.7
1,376,148 + +0.1
1,376,191 + +0.0
1,376,225 + +1.1
1,376,226 - +0.2
1,376,226 - +0.9
1,376,247 + +0.9
1,376,295 + +1.9
1,376,295 + -0.7
1,376,296 - +0.9
1,376,346 + +1.4
1,376,346 + -0.6
1,376,347 - +0.9
1,376,381 + HER17_RS06210 0.11 +0.4
1,376,382 - HER17_RS06210 0.11 -0.6
1,376,421 + HER17_RS06210 0.12 +1.5
1,376,460 + HER17_RS06210 0.14 -0.7
1,376,501 + HER17_RS06210 0.16 +0.7
1,376,502 - HER17_RS06210 0.16 -0.5
1,376,502 - HER17_RS06210 0.16 -0.4
1,376,579 + HER17_RS06210 0.20 +0.9
1,376,579 + HER17_RS06210 0.20 +0.1
1,376,650 - HER17_RS06210 0.24 +0.4
1,376,650 - HER17_RS06210 0.24 +0.3
1,376,672 + HER17_RS06210 0.25 +2.0
1,376,672 + HER17_RS06210 0.25 -1.3
1,376,672 + HER17_RS06210 0.25 -0.3
1,376,674 + HER17_RS06210 0.25 -1.0
1,376,675 - HER17_RS06210 0.25 -0.6
1,376,675 - HER17_RS06210 0.25 -0.7
1,376,796 + HER17_RS06210 0.31 +0.1
1,376,818 - HER17_RS06210 0.32 -1.1
1,376,840 - HER17_RS06210 0.33 -0.5
1,376,842 + HER17_RS06210 0.33 +0.2
1,376,842 + HER17_RS06210 0.33 -0.1
1,376,847 - HER17_RS06210 0.33 +0.7
1,376,909 + HER17_RS06210 0.36 +0.2
1,376,909 + HER17_RS06210 0.36 +1.0
1,376,910 - HER17_RS06210 0.36 -0.2
1,376,958 - HER17_RS06210 0.39 +1.6
1,376,959 + HER17_RS06210 0.39 +0.2
1,376,960 - HER17_RS06210 0.39 -0.1
1,376,981 + HER17_RS06210 0.40 +0.9
1,376,981 + HER17_RS06210 0.40 -0.7
1,376,982 - HER17_RS06210 0.40 -2.1
1,376,982 - HER17_RS06210 0.40 -1.0
1,376,984 - HER17_RS06210 0.40 -0.3
1,377,097 - HER17_RS06210 0.46 +0.1
1,377,097 - HER17_RS06210 0.46 +0.1
1,377,097 - HER17_RS06210 0.46 -1.1
1,377,210 - HER17_RS06210 0.51 -1.4
1,377,262 + HER17_RS06210 0.54 +0.5
1,377,262 + HER17_RS06210 0.54 -0.3
1,377,263 - HER17_RS06210 0.54 +0.9
1,377,263 - HER17_RS06210 0.54 -1.2
1,377,314 - HER17_RS06210 0.56 -0.5
1,377,314 - HER17_RS06210 0.56 +0.4
1,377,314 - HER17_RS06210 0.56 +0.4
1,377,353 + HER17_RS06210 0.58 +0.3
1,377,354 - HER17_RS06210 0.58 -1.2
1,377,362 + HER17_RS06210 0.58 -0.3
1,377,363 - HER17_RS06210 0.59 +0.5
1,377,363 - HER17_RS06210 0.59 +0.4
1,377,435 + HER17_RS06210 0.62 +2.0
1,377,436 - HER17_RS06210 0.62 +1.2
1,377,500 + HER17_RS06210 0.65 -0.1
1,377,501 - HER17_RS06210 0.65 -0.1
1,377,502 + HER17_RS06210 0.65 +0.1
1,377,502 + HER17_RS06210 0.65 +0.2
1,377,502 + HER17_RS06210 0.65 +0.8
1,377,503 - HER17_RS06210 0.65 +0.9
1,377,503 - HER17_RS06210 0.65 -0.5
1,377,503 - HER17_RS06210 0.65 +0.2
1,377,503 - HER17_RS06210 0.65 -1.4
1,377,506 + HER17_RS06210 0.65 +0.4
1,377,506 + HER17_RS06210 0.65 +0.7
1,377,507 - HER17_RS06210 0.66 +0.1
1,377,507 - HER17_RS06210 0.66 -0.5
1,377,507 - HER17_RS06210 0.66 +0.9
1,377,507 - HER17_RS06210 0.66 +0.1
1,377,589 + HER17_RS06210 0.70 +0.1
1,377,589 + HER17_RS06210 0.70 -1.3
1,377,595 + HER17_RS06210 0.70 +0.1
1,377,611 + HER17_RS06210 0.71 -1.0
1,377,611 + HER17_RS06210 0.71 +0.7
1,377,611 + HER17_RS06210 0.71 -1.0
1,377,611 + HER17_RS06210 0.71 +0.4
1,377,612 - HER17_RS06210 0.71 +0.3
1,377,612 - HER17_RS06210 0.71 +0.4
1,377,612 - HER17_RS06210 0.71 -0.5
1,377,612 - HER17_RS06210 0.71 +0.2
1,377,612 - HER17_RS06210 0.71 +0.1
1,377,621 + HER17_RS06210 0.71 +0.4
1,377,723 - HER17_RS06210 0.76 -0.3
1,377,723 - HER17_RS06210 0.76 +0.7
1,377,777 + HER17_RS06210 0.79 -0.9
1,377,778 - HER17_RS06210 0.79 +0.0
1,377,797 + HER17_RS06210 0.80 -0.9
1,377,797 + HER17_RS06210 0.80 +0.3
1,377,798 - HER17_RS06210 0.80 -1.1
1,377,798 - HER17_RS06210 0.80 +1.0
1,377,798 - HER17_RS06210 0.80 +0.4
1,377,799 + HER17_RS06210 0.80 +0.1
1,377,809 + HER17_RS06210 0.80 +0.5
1,377,917 + HER17_RS06210 0.86 -0.1
1,377,941 - HER17_RS06210 0.87 +0.4
1,377,941 - HER17_RS06210 0.87 -0.5
1,378,018 + +0.0
1,378,019 - -0.4
1,378,109 + -0.7
1,378,109 + -0.7
1,378,121 + -0.3
1,378,121 + +0.6
1,378,121 + -1.1
1,378,121 + +0.5
1,378,122 - -0.7
1,378,218 + -0.5
1,378,287 + -0.4
1,378,294 + -0.1
1,378,350 + +0.5
1,378,366 + -0.4
1,378,545 - HER17_RS06220 0.12 -0.0
1,378,545 - HER17_RS06220 0.12 +0.7
1,378,594 + HER17_RS06220 0.16 +0.7
1,378,643 + HER17_RS06220 0.20 -0.1
1,378,672 + HER17_RS06220 0.23 -0.2
1,378,693 - HER17_RS06220 0.24 -0.8
1,378,698 - HER17_RS06220 0.25 -0.5
1,378,714 - HER17_RS06220 0.26 +0.4
1,378,793 - HER17_RS06220 0.33 -0.8
1,378,885 - HER17_RS06220 0.41 +0.1
1,378,910 + HER17_RS06220 0.43 +1.2
1,378,924 + HER17_RS06220 0.45 +0.0
1,378,931 + HER17_RS06220 0.45 +0.6
1,378,931 + HER17_RS06220 0.45 -0.1
1,378,934 + HER17_RS06220 0.46 -0.3
1,378,934 + HER17_RS06220 0.46 +0.5
1,378,935 - HER17_RS06220 0.46 -0.1
1,378,935 - HER17_RS06220 0.46 -0.1
1,378,952 + HER17_RS06220 0.47 +0.4
1,378,964 - HER17_RS06220 0.48 +1.0
1,378,970 + HER17_RS06220 0.49 +0.1
1,378,970 + HER17_RS06220 0.49 +1.0
1,379,118 - HER17_RS06220 0.62 +0.8
1,379,128 + HER17_RS06220 0.63 -0.3
1,379,128 + HER17_RS06220 0.63 +0.1
1,379,128 + HER17_RS06220 0.63 +0.1
1,379,128 + HER17_RS06220 0.63 +0.5
1,379,129 - HER17_RS06220 0.63 +0.6
1,379,129 - HER17_RS06220 0.63 +0.4
1,379,129 - HER17_RS06220 0.63 +2.1
1,379,129 - HER17_RS06220 0.63 -0.3
1,379,129 - HER17_RS06220 0.63 +0.1
1,379,129 - HER17_RS06220 0.63 +0.7
1,379,151 + HER17_RS06220 0.65 +0.1
1,379,151 + HER17_RS06220 0.65 +0.6
1,379,152 - HER17_RS06220 0.65 +0.0
1,379,183 + HER17_RS06220 0.67 -0.3

Or see this region's nucleotide sequence