Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04665

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,057,209	+				+0.4
1,057,209	+				+0.2
1,057,209	+				-0.9
1,057,210	-				-0.3
1,057,210	-				-0.1
1,057,210	-				+0.2
1,057,210	-				-0.7
1,057,210	-				+2.2
1,057,217	+				-0.2
1,057,217	+				+0.2
1,057,217	+				-0.6
1,057,218	-				-0.0
1,057,218	-				-0.1
1,057,218	-				-2.0
1,057,218	-				+0.5
1,057,248	+				-0.7
1,057,263	+				+1.2
1,057,331	+		HER17_RS04660	0.18	+0.3
1,057,332	-		HER17_RS04660	0.18	+0.0
1,057,332	-		HER17_RS04660	0.18	-0.3
1,057,332	-		HER17_RS04660	0.18	+0.8
1,057,483	+		HER17_RS04660	0.38	-1.3
1,057,483	+		HER17_RS04660	0.38	+1.5
1,057,483	+		HER17_RS04660	0.38	+0.8
1,057,483	+		HER17_RS04660	0.38	+0.3
1,057,484	-		HER17_RS04660	0.38	+0.4
1,057,484	-		HER17_RS04660	0.38	-1.2
1,057,484	-		HER17_RS04660	0.38	+1.0
1,057,622	+		HER17_RS04660	0.56	-0.1
1,057,623	-		HER17_RS04660	0.56	-0.7
1,057,623	-		HER17_RS04660	0.56	+0.1
1,057,660	-		HER17_RS04660	0.61	-2.2
1,057,680	-		HER17_RS04660	0.63	-1.3
1,057,745	-		HER17_RS04660	0.72	-0.8
1,057,839	+		HER17_RS04660	0.84	+0.4
1,057,839	+		HER17_RS04660	0.84	-0.0
1,057,839	+		HER17_RS04660	0.84	+0.2
1,057,840	-		HER17_RS04660	0.84	-0.3
1,057,840	-		HER17_RS04660	0.84	+1.3
1,057,843	-		HER17_RS04660	0.85	-0.6
1,057,843	-		HER17_RS04660	0.85	+0.3
1,057,860	+		HER17_RS04660	0.87	-0.4
1,057,897	+				-0.1
1,057,898	-				-0.1
1,057,941	-				+1.2
1,057,941	-				+0.6
1,058,054	+				+0.2
1,058,054	+				+0.3
1,058,054	+				+0.4
1,058,054	+				-1.0
1,058,055	-				-0.2
1,058,055	-				+0.5
1,058,055	-				-0.0
1,058,056	+				-0.2
1,058,056	+				+0.7
1,058,056	+				+0.3
1,058,056	+				-0.1
1,058,056	+				+1.0
1,058,057	-				+0.5
1,058,076	+				+0.1
1,058,082	-				-0.5
1,058,082	-				+0.1
1,058,093	+				+0.4
1,058,102	-				+0.4
1,058,102	-				+0.2
1,058,102	-				-0.5
1,058,162	+				+0.4
1,058,163	-				-0.2
1,058,163	-				-1.0
1,058,163	-				-0.2
1,058,168	-				+0.5
1,058,192	+				-0.8
1,058,192	+				-0.2
1,058,192	+				+0.1
1,058,192	+				+0.8
1,058,193	-				+0.1
1,058,193	-				-0.6
1,058,193	-				-0.5
1,058,279	+		HER17_RS04665	0.11	-0.1
1,058,379	+		HER17_RS04665	0.23	+0.1
1,058,379	+		HER17_RS04665	0.23	+1.6
1,058,380	-		HER17_RS04665	0.23	+0.2
1,058,381	+		HER17_RS04665	0.23	+0.2
1,058,382	-		HER17_RS04665	0.24	-0.6
1,058,382	-		HER17_RS04665	0.24	+0.0
1,058,484	-		HER17_RS04665	0.36	-0.1
1,058,520	-		HER17_RS04665	0.41	-0.1
1,058,567	+		HER17_RS04665	0.47	+0.3
1,058,568	-		HER17_RS04665	0.47	-0.2
1,058,568	-		HER17_RS04665	0.47	+0.4
1,058,568	-		HER17_RS04665	0.47	+0.5
1,058,568	-		HER17_RS04665	0.47	+0.3
1,058,580	+		HER17_RS04665	0.48	+0.0
1,058,580	+		HER17_RS04665	0.48	+0.2
1,058,594	+		HER17_RS04665	0.50	-0.4
1,058,595	-		HER17_RS04665	0.50	-0.2
1,058,603	+		HER17_RS04665	0.51	+1.0
1,058,603	+		HER17_RS04665	0.51	-0.6
1,058,604	-		HER17_RS04665	0.51	+0.2
1,058,604	-		HER17_RS04665	0.51	+0.8
1,058,778	+		HER17_RS04665	0.73	-3.0
1,059,020	+				+0.1
1,059,020	+				+0.3
1,059,020	+				-0.2
1,059,020	+				+0.4
1,059,021	-				+0.2
1,059,021	-				-0.1
1,059,021	-				-0.0
1,059,021	-				-0.3
1,059,021	-				-1.7
1,059,021	-				+0.1
1,059,022	+				+0.4
1,059,022	+				+0.3
1,059,023	-				-0.3
1,059,023	-				-0.8
1,059,023	-				+0.6
1,059,069	-				+0.2
1,059,105	+				-0.1
1,059,106	-				-0.8
1,059,192	-		HER17_RS04670	0.12	+0.2
1,059,205	-		HER17_RS04670	0.13	-0.2
1,059,303	+		HER17_RS04670	0.22	+0.1
1,059,303	+		HER17_RS04670	0.22	+1.1
1,059,303	+		HER17_RS04670	0.22	-0.4
1,059,303	+		HER17_RS04670	0.22	+1.1
1,059,303	+		HER17_RS04670	0.22	-0.1
1,059,303	+		HER17_RS04670	0.22	-0.7
1,059,303	+		HER17_RS04670	0.22	-0.6
1,059,303	+		HER17_RS04670	0.22	+0.3
1,059,304	-		HER17_RS04670	0.22	-0.2
1,059,304	-		HER17_RS04670	0.22	-0.0
1,059,304	-		HER17_RS04670	0.22	-0.0
1,059,304	-		HER17_RS04670	0.22	-0.0
1,059,304	-		HER17_RS04670	0.22	+0.4
1,059,304	-		HER17_RS04670	0.22	+1.0
1,059,304	-		HER17_RS04670	0.22	+0.7
1,059,304	-		HER17_RS04670	0.22	+0.8
1,059,304	-		HER17_RS04670	0.22	-0.4
1,059,305	+		HER17_RS04670	0.22	+0.4
1,059,305	+		HER17_RS04670	0.22	+0.0
1,059,305	+		HER17_RS04670	0.22	-0.6
1,059,305	+		HER17_RS04670	0.22	-2.0
1,059,305	+		HER17_RS04670	0.22	-1.0
1,059,306	-		HER17_RS04670	0.22	-0.6
1,059,306	-		HER17_RS04670	0.22	+0.6
1,059,306	-		HER17_RS04670	0.22	-0.6
1,059,306	-		HER17_RS04670	0.22	+0.3
1,059,306	-		HER17_RS04670	0.22	+0.7
1,059,347	+		HER17_RS04670	0.26	+0.7
1,059,347	+		HER17_RS04670	0.26	+0.0
1,059,347	+		HER17_RS04670	0.26	+0.2
1,059,347	+		HER17_RS04670	0.26	-0.7
1,059,347	+		HER17_RS04670	0.26	-0.4
1,059,348	-		HER17_RS04670	0.26	-0.1
1,059,348	-		HER17_RS04670	0.26	-0.5
1,059,385	-		HER17_RS04670	0.30	+0.6
1,059,532	+		HER17_RS04670	0.44	-0.1
1,059,533	-		HER17_RS04670	0.44	+0.3
1,059,533	-		HER17_RS04670	0.44	-1.1
1,059,536	+		HER17_RS04670	0.44	+0.5
1,059,536	+		HER17_RS04670	0.44	+0.8
1,059,537	-		HER17_RS04670	0.44	+2.0
1,059,537	-		HER17_RS04670	0.44	+0.6
1,059,537	-		HER17_RS04670	0.44	+0.2
1,059,552	+		HER17_RS04670	0.46	-0.3
1,059,552	+		HER17_RS04670	0.46	-0.0
1,059,552	+		HER17_RS04670	0.46	+0.5
1,059,553	-		HER17_RS04670	0.46	+0.2
1,059,553	-		HER17_RS04670	0.46	+1.1
1,059,553	-		HER17_RS04670	0.46	-0.1
1,059,553	-		HER17_RS04670	0.46	-1.1
1,059,553	-		HER17_RS04670	0.46	+0.4
1,059,553	-		HER17_RS04670	0.46	+0.3
1,059,553	-		HER17_RS04670	0.46	-0.5
1,059,553	-		HER17_RS04670	0.46	+0.6
1,059,553	-		HER17_RS04670	0.46	-0.3
1,059,553	-		HER17_RS04670	0.46	+0.3
1,059,560	+		HER17_RS04670	0.46	+0.3
1,059,561	-		HER17_RS04670	0.46	-1.3
1,059,561	-		HER17_RS04670	0.46	+0.2
1,059,561	-		HER17_RS04670	0.46	-0.0
1,059,662	+		HER17_RS04670	0.56	+1.0
1,059,684	+		HER17_RS04670	0.58	+1.1
1,059,684	+		HER17_RS04670	0.58	+2.1
1,059,684	+		HER17_RS04670	0.58	-1.2
1,059,684	+		HER17_RS04670	0.58	-0.3
1,059,685	-		HER17_RS04670	0.58	-0.3
1,059,685	-		HER17_RS04670	0.58	+0.1
1,059,705	-		HER17_RS04670	0.60	-0.0
1,059,802	+		HER17_RS04670	0.69	+0.4
1,059,802	+		HER17_RS04670	0.69	+0.3
1,059,803	-		HER17_RS04670	0.69	-0.3
1,059,803	-		HER17_RS04670	0.69	+0.2
1,059,803	-		HER17_RS04670	0.69	+0.7
1,059,856	+		HER17_RS04670	0.74	+0.1
1,059,857	-		HER17_RS04670	0.74	+0.8
1,059,867	+		HER17_RS04670	0.75	-0.3
1,059,867	+		HER17_RS04670	0.75	-0.2
1,059,867	+		HER17_RS04670	0.75	+0.8
1,059,868	-		HER17_RS04670	0.75	+1.0
1,059,915	-		HER17_RS04670	0.80	+1.2