Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03875 and HER17_RS03880 are separated by 236 nucleotides HER17_RS03880 and HER17_RS03885 are separated by 294 nucleotides
HER17_RS03875: HER17_RS03875 - RNA ligase RtcB family protein, at 875,635 to 876,756
_RS03875
HER17_RS03880: HER17_RS03880 - methyl-accepting chemotaxis protein, at 876,993 to 878,933
_RS03880
HER17_RS03885: HER17_RS03885 - esterase, at 879,228 to 879,980
_RS03885
Position (kb) 876
877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.025 kb on - strand, within HER17_RS03875 at 876.025 kb on - strand, within HER17_RS03875 at 876.088 kb on - strand, within HER17_RS03875 at 876.170 kb on + strand, within HER17_RS03875 at 876.170 kb on + strand, within HER17_RS03875 at 876.171 kb on - strand, within HER17_RS03875 at 876.171 kb on - strand, within HER17_RS03875 at 876.238 kb on + strand, within HER17_RS03875 at 876.239 kb on - strand, within HER17_RS03875 at 876.283 kb on + strand, within HER17_RS03875 at 876.284 kb on - strand, within HER17_RS03875 at 876.284 kb on - strand, within HER17_RS03875 at 876.330 kb on - strand, within HER17_RS03875 at 876.451 kb on - strand, within HER17_RS03875 at 876.453 kb on + strand, within HER17_RS03875 at 876.453 kb on + strand, within HER17_RS03875 at 876.454 kb on - strand, within HER17_RS03875 at 876.454 kb on - strand, within HER17_RS03875 at 876.660 kb on + strand at 876.660 kb on + strand at 876.684 kb on + strand at 876.699 kb on + strand at 876.756 kb on + strand at 876.756 kb on + strand at 876.756 kb on + strand at 876.756 kb on + strand at 876.757 kb on - strand at 876.779 kb on - strand at 876.872 kb on + strand at 876.872 kb on + strand at 876.872 kb on + strand at 876.873 kb on - strand at 876.935 kb on - strand at 876.937 kb on + strand at 876.937 kb on + strand at 877.113 kb on + strand at 877.198 kb on - strand, within HER17_RS03880 at 877.313 kb on + strand, within HER17_RS03880 at 877.314 kb on - strand, within HER17_RS03880 at 877.396 kb on - strand, within HER17_RS03880 at 877.436 kb on + strand, within HER17_RS03880 at 877.625 kb on + strand, within HER17_RS03880 at 877.625 kb on + strand, within HER17_RS03880 at 877.625 kb on + strand, within HER17_RS03880 at 877.626 kb on - strand, within HER17_RS03880 at 877.647 kb on - strand, within HER17_RS03880 at 877.647 kb on - strand, within HER17_RS03880 at 877.685 kb on + strand, within HER17_RS03880 at 877.685 kb on + strand, within HER17_RS03880 at 877.811 kb on - strand, within HER17_RS03880 at 877.841 kb on + strand, within HER17_RS03880 at 877.863 kb on + strand, within HER17_RS03880 at 877.971 kb on - strand, within HER17_RS03880 at 877.971 kb on - strand, within HER17_RS03880 at 877.996 kb on - strand, within HER17_RS03880 at 877.996 kb on - strand, within HER17_RS03880 at 878.053 kb on + strand, within HER17_RS03880 at 878.054 kb on - strand, within HER17_RS03880 at 878.054 kb on - strand, within HER17_RS03880 at 878.101 kb on + strand, within HER17_RS03880 at 878.111 kb on + strand, within HER17_RS03880 at 878.140 kb on - strand, within HER17_RS03880 at 878.194 kb on + strand, within HER17_RS03880 at 878.194 kb on + strand, within HER17_RS03880 at 878.194 kb on + strand, within HER17_RS03880 at 878.194 kb on + strand, within HER17_RS03880 at 878.194 kb on + strand, within HER17_RS03880 at 878.195 kb on - strand, within HER17_RS03880 at 878.195 kb on - strand, within HER17_RS03880 at 878.195 kb on - strand, within HER17_RS03880 at 878.195 kb on - strand, within HER17_RS03880 at 878.225 kb on + strand, within HER17_RS03880 at 878.225 kb on + strand, within HER17_RS03880 at 878.226 kb on - strand, within HER17_RS03880 at 878.270 kb on + strand, within HER17_RS03880 at 878.270 kb on + strand, within HER17_RS03880 at 878.271 kb on - strand, within HER17_RS03880 at 878.325 kb on - strand, within HER17_RS03880 at 878.363 kb on - strand, within HER17_RS03880 at 878.363 kb on - strand, within HER17_RS03880 at 878.374 kb on + strand, within HER17_RS03880 at 878.374 kb on + strand, within HER17_RS03880 at 878.374 kb on + strand, within HER17_RS03880 at 878.374 kb on + strand, within HER17_RS03880 at 878.374 kb on + strand, within HER17_RS03880 at 878.375 kb on - strand, within HER17_RS03880 at 878.375 kb on - strand, within HER17_RS03880 at 878.375 kb on - strand, within HER17_RS03880 at 878.398 kb on - strand, within HER17_RS03880 at 878.405 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.407 kb on + strand, within HER17_RS03880 at 878.408 kb on - strand, within HER17_RS03880 at 878.408 kb on - strand, within HER17_RS03880 at 878.408 kb on - strand, within HER17_RS03880 at 878.408 kb on - strand, within HER17_RS03880 at 878.467 kb on - strand, within HER17_RS03880 at 878.467 kb on - strand, within HER17_RS03880 at 878.467 kb on - strand, within HER17_RS03880 at 878.709 kb on - strand, within HER17_RS03880 at 878.709 kb on - strand, within HER17_RS03880 at 878.710 kb on + strand, within HER17_RS03880 at 878.710 kb on + strand, within HER17_RS03880 at 878.710 kb on + strand, within HER17_RS03880 at 878.710 kb on + strand, within HER17_RS03880 at 878.710 kb on + strand, within HER17_RS03880 at 878.711 kb on - strand, within HER17_RS03880 at 878.730 kb on + strand, within HER17_RS03880 at 878.730 kb on + strand, within HER17_RS03880 at 878.731 kb on - strand, within HER17_RS03880 at 878.731 kb on - strand, within HER17_RS03880 at 878.743 kb on + strand at 878.743 kb on + strand at 878.743 kb on + strand at 878.743 kb on + strand at 878.744 kb on - strand at 878.744 kb on - strand at 878.744 kb on - strand at 878.889 kb on + strand at 878.889 kb on + strand at 878.889 kb on + strand at 878.916 kb on - strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.933 kb on + strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.934 kb on - strand at 878.946 kb on + strand at 878.946 kb on + strand at 878.947 kb on - strand at 878.947 kb on - strand at 878.947 kb on - strand at 878.947 kb on - strand at 878.947 kb on - strand at 878.947 kb on - strand at 878.997 kb on + strand at 878.998 kb on - strand at 879.026 kb on - strand at 879.051 kb on - strand at 879.073 kb on + strand at 879.077 kb on + strand at 879.078 kb on - strand at 879.078 kb on - strand at 879.090 kb on + strand at 879.123 kb on + strand at 879.151 kb on + strand at 879.192 kb on + strand at 879.192 kb on + strand at 879.192 kb on + strand at 879.227 kb on + strand at 879.227 kb on + strand at 879.227 kb on + strand at 879.228 kb on - strand at 879.228 kb on - strand at 879.228 kb on - strand at 879.284 kb on - strand at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.358 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.437 kb on + strand, within HER17_RS03885 at 879.477 kb on - strand, within HER17_RS03885 at 879.510 kb on + strand, within HER17_RS03885 at 879.511 kb on - strand, within HER17_RS03885 at 879.523 kb on - strand, within HER17_RS03885 at 879.603 kb on - strand, within HER17_RS03885 at 879.623 kb on + strand, within HER17_RS03885 at 879.623 kb on + strand, within HER17_RS03885 at 879.624 kb on - strand, within HER17_RS03885 at 879.641 kb on + strand, within HER17_RS03885 at 879.641 kb on + strand, within HER17_RS03885 at 879.642 kb on - strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.754 kb on - strand, within HER17_RS03885 at 879.866 kb on - strand, within HER17_RS03885 at 879.888 kb on - strand, within HER17_RS03885 at 879.898 kb on - strand, within HER17_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 876,025 - HER17_RS03875 0.35 -0.2 876,025 - HER17_RS03875 0.35 -0.4 876,088 - HER17_RS03875 0.40 -0.0 876,170 + HER17_RS03875 0.48 +0.3 876,170 + HER17_RS03875 0.48 +0.1 876,171 - HER17_RS03875 0.48 +1.5 876,171 - HER17_RS03875 0.48 +0.9 876,238 + HER17_RS03875 0.54 -0.3 876,239 - HER17_RS03875 0.54 +0.9 876,283 + HER17_RS03875 0.58 +0.3 876,284 - HER17_RS03875 0.58 +0.1 876,284 - HER17_RS03875 0.58 -0.7 876,330 - HER17_RS03875 0.62 -1.4 876,451 - HER17_RS03875 0.73 +0.3 876,453 + HER17_RS03875 0.73 -1.4 876,453 + HER17_RS03875 0.73 -0.3 876,454 - HER17_RS03875 0.73 +1.5 876,454 - HER17_RS03875 0.73 -1.0 876,660 + +1.3 876,660 + +0.1 876,684 + +0.7 876,699 + +0.3 876,756 + +1.1 876,756 + -0.8 876,756 + +0.7 876,756 + -0.7 876,757 - +0.6 876,779 - -1.3 876,872 + +0.2 876,872 + +0.9 876,872 + -0.3 876,873 - +0.0 876,935 - -1.2 876,937 + -0.0 876,937 + +0.1 877,113 + -0.0 877,198 - HER17_RS03880 0.11 -0.2 877,313 + HER17_RS03880 0.16 -0.3 877,314 - HER17_RS03880 0.17 +1.3 877,396 - HER17_RS03880 0.21 +0.7 877,436 + HER17_RS03880 0.23 -2.0 877,625 + HER17_RS03880 0.33 -0.7 877,625 + HER17_RS03880 0.33 -0.3 877,625 + HER17_RS03880 0.33 +0.2 877,626 - HER17_RS03880 0.33 +0.1 877,647 - HER17_RS03880 0.34 -1.3 877,647 - HER17_RS03880 0.34 -0.3 877,685 + HER17_RS03880 0.36 +0.2 877,685 + HER17_RS03880 0.36 +0.1 877,811 - HER17_RS03880 0.42 +0.6 877,841 + HER17_RS03880 0.44 +0.3 877,863 + HER17_RS03880 0.45 -2.6 877,971 - HER17_RS03880 0.50 -1.5 877,971 - HER17_RS03880 0.50 +0.1 877,996 - HER17_RS03880 0.52 +0.4 877,996 - HER17_RS03880 0.52 -0.4 878,053 + HER17_RS03880 0.55 -2.3 878,054 - HER17_RS03880 0.55 +1.1 878,054 - HER17_RS03880 0.55 +0.1 878,101 + HER17_RS03880 0.57 +0.2 878,111 + HER17_RS03880 0.58 -0.6 878,140 - HER17_RS03880 0.59 -0.7 878,194 + HER17_RS03880 0.62 -0.5 878,194 + HER17_RS03880 0.62 +0.6 878,194 + HER17_RS03880 0.62 +0.9 878,194 + HER17_RS03880 0.62 +0.8 878,194 + HER17_RS03880 0.62 -0.8 878,195 - HER17_RS03880 0.62 -0.0 878,195 - HER17_RS03880 0.62 +1.3 878,195 - HER17_RS03880 0.62 +0.1 878,195 - HER17_RS03880 0.62 +0.6 878,225 + HER17_RS03880 0.63 -0.9 878,225 + HER17_RS03880 0.63 -0.6 878,226 - HER17_RS03880 0.64 -1.9 878,270 + HER17_RS03880 0.66 +0.7 878,270 + HER17_RS03880 0.66 +1.4 878,271 - HER17_RS03880 0.66 +0.3 878,325 - HER17_RS03880 0.69 +0.3 878,363 - HER17_RS03880 0.71 -0.2 878,363 - HER17_RS03880 0.71 +0.4 878,374 + HER17_RS03880 0.71 -0.7 878,374 + HER17_RS03880 0.71 -0.1 878,374 + HER17_RS03880 0.71 -0.5 878,374 + HER17_RS03880 0.71 +0.0 878,374 + HER17_RS03880 0.71 -1.2 878,375 - HER17_RS03880 0.71 -0.4 878,375 - HER17_RS03880 0.71 +0.1 878,375 - HER17_RS03880 0.71 +0.2 878,398 - HER17_RS03880 0.72 +0.2 878,405 + HER17_RS03880 0.73 -0.0 878,407 + HER17_RS03880 0.73 +1.1 878,407 + HER17_RS03880 0.73 -0.4 878,407 + HER17_RS03880 0.73 +0.0 878,407 + HER17_RS03880 0.73 -0.7 878,407 + HER17_RS03880 0.73 +0.4 878,407 + HER17_RS03880 0.73 +0.1 878,407 + HER17_RS03880 0.73 +0.7 878,408 - HER17_RS03880 0.73 +0.7 878,408 - HER17_RS03880 0.73 +0.3 878,408 - HER17_RS03880 0.73 +0.0 878,408 - HER17_RS03880 0.73 +0.3 878,467 - HER17_RS03880 0.76 +0.2 878,467 - HER17_RS03880 0.76 +0.0 878,467 - HER17_RS03880 0.76 +1.1 878,709 - HER17_RS03880 0.88 +0.4 878,709 - HER17_RS03880 0.88 -0.2 878,710 + HER17_RS03880 0.88 -0.1 878,710 + HER17_RS03880 0.88 +0.7 878,710 + HER17_RS03880 0.88 +0.2 878,710 + HER17_RS03880 0.88 -0.5 878,710 + HER17_RS03880 0.88 -1.7 878,711 - HER17_RS03880 0.89 +0.4 878,730 + HER17_RS03880 0.89 +0.8 878,730 + HER17_RS03880 0.89 -0.5 878,731 - HER17_RS03880 0.90 -0.2 878,731 - HER17_RS03880 0.90 -0.7 878,743 + -0.1 878,743 + -0.5 878,743 + -0.5 878,743 + -0.4 878,744 - +1.1 878,744 - -0.5 878,744 - +0.6 878,889 + -0.5 878,889 + -0.2 878,889 + -0.4 878,916 - -0.2 878,933 + +0.6 878,933 + -0.7 878,933 + -1.0 878,933 + +0.2 878,933 + -0.2 878,933 + -0.3 878,933 + +0.5 878,933 + -0.5 878,933 + +0.9 878,933 + -0.4 878,933 + -0.5 878,933 + -0.1 878,933 + +0.0 878,933 + +0.4 878,933 + -0.3 878,933 + +0.6 878,933 + +0.5 878,933 + +2.0 878,933 + -0.7 878,933 + +0.5 878,933 + +0.4 878,934 - +0.1 878,934 - -0.3 878,934 - +0.6 878,934 - -0.2 878,934 - -0.4 878,934 - -0.7 878,934 - +0.5 878,934 - -0.4 878,934 - -0.2 878,934 - -0.3 878,934 - -0.1 878,934 - +0.6 878,934 - -0.8 878,934 - +1.1 878,934 - +1.0 878,934 - +0.6 878,934 - -0.0 878,946 + +2.1 878,946 + -1.1 878,947 - +0.5 878,947 - -0.4 878,947 - -0.0 878,947 - +0.1 878,947 - +0.5 878,947 - -0.2 878,997 + -1.8 878,998 - -0.0 879,026 - -0.8 879,051 - +0.3 879,073 + -0.4 879,077 + +0.3 879,078 - +0.2 879,078 - -0.0 879,090 + +0.6 879,123 + +0.9 879,151 + -0.2 879,192 + +1.7 879,192 + +0.3 879,192 + +0.3 879,227 + -1.1 879,227 + +0.6 879,227 + -0.4 879,228 - +0.1 879,228 - -0.4 879,228 - +0.5 879,284 - -0.6 879,357 + HER17_RS03885 0.17 -0.5 879,357 + HER17_RS03885 0.17 -1.0 879,357 + HER17_RS03885 0.17 -0.4 879,357 + HER17_RS03885 0.17 -1.1 879,357 + HER17_RS03885 0.17 -0.6 879,358 - HER17_RS03885 0.17 -1.7 879,436 - HER17_RS03885 0.28 -0.2 879,436 - HER17_RS03885 0.28 -1.3 879,436 - HER17_RS03885 0.28 -0.8 879,436 - HER17_RS03885 0.28 -1.1 879,437 + HER17_RS03885 0.28 -0.3 879,477 - HER17_RS03885 0.33 +0.1 879,510 + HER17_RS03885 0.37 -0.3 879,511 - HER17_RS03885 0.38 -0.5 879,523 - HER17_RS03885 0.39 -0.4 879,603 - HER17_RS03885 0.50 -0.4 879,623 + HER17_RS03885 0.52 -0.4 879,623 + HER17_RS03885 0.52 -0.4 879,624 - HER17_RS03885 0.53 -0.0 879,641 + HER17_RS03885 0.55 -0.2 879,641 + HER17_RS03885 0.55 -1.4 879,642 - HER17_RS03885 0.55 -0.1 879,753 + HER17_RS03885 0.70 +1.2 879,753 + HER17_RS03885 0.70 +0.4 879,753 + HER17_RS03885 0.70 -0.1 879,754 - HER17_RS03885 0.70 +0.0 879,866 - HER17_RS03885 0.85 -0.8 879,888 - HER17_RS03885 0.88 -0.1 879,898 - HER17_RS03885 0.89 +0.1
Or see this region's nucleotide sequence