Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03415 and HER17_RS03420 are separated by 692 nucleotides HER17_RS03420 and HER17_RS03425 are separated by 45 nucleotides HER17_RS03425 and HER17_RS03430 are separated by 63 nucleotides
HER17_RS03415: HER17_RS03415 - choline trimethylamine-lyase, at 775,528 to 777,903
_RS03415
HER17_RS03420: HER17_RS03420 - SDR family oxidoreductase, at 778,596 to 779,285
_RS03420
HER17_RS03425: HER17_RS03425 - YhcH/YjgK/YiaL family protein, at 779,331 to 779,798
_RS03425
HER17_RS03430: HER17_RS03430 - exo-alpha-sialidase, at 779,862 to 781,049
_RS03430
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 777.615 kb on + strand, within HER17_RS03415 at 777.615 kb on + strand, within HER17_RS03415 at 777.703 kb on + strand at 777.780 kb on + strand at 777.834 kb on - strand at 777.834 kb on - strand at 777.843 kb on + strand at 777.843 kb on + strand at 777.843 kb on + strand at 777.843 kb on + strand at 777.844 kb on - strand at 777.844 kb on - strand at 777.844 kb on - strand at 777.844 kb on - strand at 777.847 kb on - strand at 777.863 kb on + strand at 777.885 kb on + strand at 777.886 kb on - strand at 777.886 kb on - strand at 777.886 kb on - strand at 777.895 kb on - strand at 777.913 kb on + strand at 777.914 kb on - strand at 777.919 kb on - strand at 777.967 kb on + strand at 778.085 kb on + strand at 778.085 kb on + strand at 778.085 kb on + strand at 778.086 kb on - strand at 778.086 kb on - strand at 778.086 kb on - strand at 778.088 kb on + strand at 778.089 kb on - strand at 778.089 kb on - strand at 778.089 kb on - strand at 778.089 kb on - strand at 778.106 kb on + strand at 778.259 kb on - strand at 778.261 kb on - strand at 778.285 kb on - strand at 778.332 kb on - strand at 778.338 kb on - strand at 778.347 kb on + strand at 778.347 kb on + strand at 778.348 kb on - strand at 778.501 kb on - strand at 778.536 kb on + strand at 778.537 kb on - strand at 778.552 kb on - strand at 778.552 kb on - strand at 778.552 kb on - strand at 778.552 kb on - strand at 778.794 kb on + strand, within HER17_RS03420 at 778.799 kb on + strand, within HER17_RS03420 at 778.800 kb on - strand, within HER17_RS03420 at 778.800 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.965 kb on + strand, within HER17_RS03420 at 778.965 kb on + strand, within HER17_RS03420 at 778.966 kb on - strand, within HER17_RS03420 at 778.966 kb on - strand, within HER17_RS03420 at 779.082 kb on + strand, within HER17_RS03420 at 779.114 kb on + strand, within HER17_RS03420 at 779.159 kb on - strand, within HER17_RS03420 at 779.159 kb on - strand, within HER17_RS03420 at 779.354 kb on + strand at 779.489 kb on + strand, within HER17_RS03425 at 779.491 kb on + strand, within HER17_RS03425 at 779.491 kb on + strand, within HER17_RS03425 at 779.491 kb on + strand, within HER17_RS03425 at 779.492 kb on - strand, within HER17_RS03425 at 779.492 kb on - strand, within HER17_RS03425 at 779.504 kb on + strand, within HER17_RS03425 at 779.504 kb on + strand, within HER17_RS03425 at 779.505 kb on - strand, within HER17_RS03425 at 779.757 kb on + strand at 779.798 kb on + strand at 779.799 kb on - strand at 779.799 kb on - strand at 779.864 kb on - strand at 779.920 kb on + strand at 779.921 kb on - strand at 780.005 kb on + strand, within HER17_RS03430 at 780.006 kb on - strand, within HER17_RS03430 at 780.039 kb on - strand, within HER17_RS03430 at 780.139 kb on - strand, within HER17_RS03430 at 780.193 kb on + strand, within HER17_RS03430 at 780.193 kb on + strand, within HER17_RS03430 at 780.193 kb on + strand, within HER17_RS03430 at 780.233 kb on + strand, within HER17_RS03430 at 780.233 kb on + strand, within HER17_RS03430 at 780.233 kb on + strand, within HER17_RS03430 at 780.234 kb on - strand, within HER17_RS03430
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 777,615 + HER17_RS03415 0.88 -0.4 777,615 + HER17_RS03415 0.88 +0.1 777,703 + +0.5 777,780 + +1.2 777,834 - -1.1 777,834 - +0.4 777,843 + -0.8 777,843 + +1.0 777,843 + +0.4 777,843 + -0.3 777,844 - +0.7 777,844 - -0.9 777,844 - +0.5 777,844 - -0.2 777,847 - +1.1 777,863 + +0.2 777,885 + -0.8 777,886 - -1.9 777,886 - +0.4 777,886 - -0.2 777,895 - +0.7 777,913 + -0.2 777,914 - -0.8 777,919 - +0.2 777,967 + +0.2 778,085 + -0.2 778,085 + +0.2 778,085 + -2.1 778,086 - -0.3 778,086 - -0.2 778,086 - -0.3 778,088 + -1.3 778,089 - +0.1 778,089 - +0.3 778,089 - +0.4 778,089 - -0.2 778,106 + -0.3 778,259 - -0.6 778,261 - -0.2 778,285 - -0.2 778,332 - +0.2 778,338 - -0.3 778,347 + -0.7 778,347 + +0.5 778,348 - +1.2 778,501 - +0.0 778,536 + +1.4 778,537 - +0.5 778,552 - -0.2 778,552 - -1.0 778,552 - -0.2 778,552 - -1.8 778,794 + HER17_RS03420 0.29 +0.5 778,799 + HER17_RS03420 0.29 -0.7 778,800 - HER17_RS03420 0.30 +0.0 778,800 - HER17_RS03420 0.30 -0.3 778,871 - HER17_RS03420 0.40 +0.3 778,871 - HER17_RS03420 0.40 +1.2 778,871 - HER17_RS03420 0.40 +0.5 778,871 - HER17_RS03420 0.40 -0.0 778,871 - HER17_RS03420 0.40 +1.0 778,871 - HER17_RS03420 0.40 +0.4 778,965 + HER17_RS03420 0.53 -0.0 778,965 + HER17_RS03420 0.53 +0.9 778,966 - HER17_RS03420 0.54 -1.1 778,966 - HER17_RS03420 0.54 -0.5 779,082 + HER17_RS03420 0.70 +1.0 779,114 + HER17_RS03420 0.75 +0.6 779,159 - HER17_RS03420 0.82 +0.2 779,159 - HER17_RS03420 0.82 +0.0 779,354 + +0.2 779,489 + HER17_RS03425 0.34 -0.4 779,491 + HER17_RS03425 0.34 -0.3 779,491 + HER17_RS03425 0.34 +0.1 779,491 + HER17_RS03425 0.34 -0.1 779,492 - HER17_RS03425 0.34 +0.1 779,492 - HER17_RS03425 0.34 -0.8 779,504 + HER17_RS03425 0.37 -0.2 779,504 + HER17_RS03425 0.37 +0.9 779,505 - HER17_RS03425 0.37 +1.1 779,757 + -0.1 779,798 + -0.6 779,799 - +1.2 779,799 - -0.2 779,864 - +0.4 779,920 + +0.3 779,921 - +0.7 780,005 + HER17_RS03430 0.12 +0.1 780,006 - HER17_RS03430 0.12 +0.1 780,039 - HER17_RS03430 0.15 +0.0 780,139 - HER17_RS03430 0.23 -0.8 780,193 + HER17_RS03430 0.28 +0.9 780,193 + HER17_RS03430 0.28 -0.7 780,193 + HER17_RS03430 0.28 -0.3 780,233 + HER17_RS03430 0.31 +0.1 780,233 + HER17_RS03430 0.31 -0.1 780,233 + HER17_RS03430 0.31 -0.1 780,234 - HER17_RS03430 0.31 -0.0
Or see this region's nucleotide sequence