Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02300 and HER17_RS02305 are separated by 272 nucleotides HER17_RS02305 and HER17_RS02310 are separated by 316 nucleotides
HER17_RS02300: HER17_RS02300 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 510,096 to 511,871
_RS02300
HER17_RS02305: HER17_RS02305 - glyoxylate bypass operon transcriptional repressor IclR, at 512,144 to 512,974
_RS02305
HER17_RS02310: HER17_RS02310 - methionine synthase, at 513,291 to 516,974
_RS02310
Position (kb) 512
513 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 511.164 kb on + strand, within HER17_RS02300 at 511.165 kb on - strand, within HER17_RS02300 at 511.165 kb on - strand, within HER17_RS02300 at 511.165 kb on - strand, within HER17_RS02300 at 511.219 kb on - strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.336 kb on - strand, within HER17_RS02300 at 511.336 kb on - strand, within HER17_RS02300 at 511.336 kb on - strand, within HER17_RS02300 at 511.337 kb on + strand, within HER17_RS02300 at 511.368 kb on + strand, within HER17_RS02300 at 511.369 kb on - strand, within HER17_RS02300 at 511.369 kb on - strand, within HER17_RS02300 at 511.471 kb on + strand, within HER17_RS02300 at 511.472 kb on - strand, within HER17_RS02300 at 511.515 kb on + strand, within HER17_RS02300 at 511.515 kb on + strand, within HER17_RS02300 at 511.516 kb on - strand, within HER17_RS02300 at 511.516 kb on - strand, within HER17_RS02300 at 511.521 kb on + strand, within HER17_RS02300 at 511.521 kb on + strand, within HER17_RS02300 at 511.521 kb on + strand, within HER17_RS02300 at 511.522 kb on - strand, within HER17_RS02300 at 511.522 kb on - strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.537 kb on - strand, within HER17_RS02300 at 511.537 kb on - strand, within HER17_RS02300 at 511.537 kb on - strand, within HER17_RS02300 at 511.550 kb on + strand, within HER17_RS02300 at 511.595 kb on - strand, within HER17_RS02300 at 511.611 kb on + strand, within HER17_RS02300 at 511.612 kb on - strand, within HER17_RS02300 at 511.726 kb on - strand at 511.738 kb on + strand at 511.749 kb on - strand at 511.776 kb on + strand at 511.777 kb on - strand at 511.777 kb on - strand at 511.777 kb on - strand at 511.824 kb on + strand at 511.824 kb on + strand at 511.824 kb on + strand at 511.824 kb on + strand at 511.825 kb on - strand at 511.825 kb on - strand at 511.825 kb on - strand at 511.825 kb on - strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.832 kb on + strand at 511.832 kb on + strand at 511.833 kb on - strand at 511.833 kb on - strand at 512.001 kb on + strand at 512.024 kb on - strand at 512.068 kb on - strand at 512.084 kb on + strand at 512.085 kb on - strand at 512.090 kb on + strand at 512.091 kb on - strand at 512.091 kb on - strand at 512.094 kb on - strand at 512.094 kb on - strand at 512.094 kb on - strand at 512.094 kb on - strand at 512.124 kb on + strand at 512.125 kb on - strand at 512.287 kb on + strand, within HER17_RS02305 at 512.287 kb on + strand, within HER17_RS02305 at 512.407 kb on + strand, within HER17_RS02305 at 512.408 kb on - strand, within HER17_RS02305 at 512.408 kb on - strand, within HER17_RS02305 at 512.408 kb on - strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.578 kb on + strand, within HER17_RS02305 at 512.579 kb on - strand, within HER17_RS02305 at 512.579 kb on - strand, within HER17_RS02305 at 512.631 kb on - strand, within HER17_RS02305 at 512.639 kb on + strand, within HER17_RS02305 at 512.639 kb on + strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.857 kb on + strand, within HER17_RS02305 at 512.858 kb on - strand, within HER17_RS02305 at 512.859 kb on + strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.992 kb on - strand at 513.021 kb on - strand at 513.087 kb on + strand at 513.113 kb on + strand at 513.113 kb on + strand at 513.113 kb on + strand at 513.113 kb on + strand at 513.113 kb on + strand at 513.114 kb on - strand at 513.114 kb on - strand at 513.114 kb on - strand at 513.114 kb on - strand at 513.118 kb on + strand at 513.118 kb on + strand at 513.118 kb on + strand at 513.118 kb on + strand at 513.118 kb on + strand at 513.119 kb on - strand at 513.119 kb on - strand at 513.119 kb on - strand at 513.119 kb on - strand at 513.119 kb on - strand at 513.126 kb on - strand at 513.126 kb on - strand at 513.126 kb on - strand at 513.145 kb on - strand at 513.145 kb on - strand at 513.145 kb on - strand at 513.145 kb on - strand at 513.145 kb on - strand at 513.145 kb on - strand at 513.145 kb on - strand at 513.182 kb on + strand at 513.182 kb on + strand at 513.182 kb on + strand at 513.182 kb on + strand at 513.182 kb on + strand at 513.182 kb on + strand at 513.248 kb on + strand at 513.249 kb on - strand at 513.255 kb on + strand at 513.255 kb on + strand at 513.256 kb on - strand at 513.259 kb on + strand at 513.259 kb on + strand at 513.259 kb on + strand at 513.259 kb on + strand at 513.260 kb on - strand at 513.260 kb on - strand at 513.260 kb on - strand at 513.264 kb on + strand at 513.265 kb on - strand at 513.265 kb on - strand at 513.265 kb on - strand at 513.269 kb on - strand at 513.338 kb on + strand at 513.338 kb on + strand at 513.339 kb on - strand at 513.356 kb on + strand at 513.447 kb on - strand at 513.447 kb on - strand at 513.457 kb on + strand at 513.570 kb on + strand at 513.575 kb on + strand at 513.576 kb on - strand at 513.662 kb on + strand, within HER17_RS02310 at 513.672 kb on + strand, within HER17_RS02310 at 513.858 kb on - strand, within HER17_RS02310 at 513.954 kb on - strand, within HER17_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 511,164 + HER17_RS02300 0.60 +0.1 511,165 - HER17_RS02300 0.60 +0.3 511,165 - HER17_RS02300 0.60 +0.5 511,165 - HER17_RS02300 0.60 -0.4 511,219 - HER17_RS02300 0.63 +0.0 511,335 + HER17_RS02300 0.70 +0.7 511,335 + HER17_RS02300 0.70 +0.7 511,335 + HER17_RS02300 0.70 -0.8 511,335 + HER17_RS02300 0.70 +0.9 511,336 - HER17_RS02300 0.70 +0.2 511,336 - HER17_RS02300 0.70 -0.9 511,336 - HER17_RS02300 0.70 +0.4 511,337 + HER17_RS02300 0.70 +0.4 511,368 + HER17_RS02300 0.72 +0.8 511,369 - HER17_RS02300 0.72 +0.9 511,369 - HER17_RS02300 0.72 -1.3 511,471 + HER17_RS02300 0.77 -0.2 511,472 - HER17_RS02300 0.77 +0.5 511,515 + HER17_RS02300 0.80 +0.6 511,515 + HER17_RS02300 0.80 -0.3 511,516 - HER17_RS02300 0.80 -0.3 511,516 - HER17_RS02300 0.80 +0.5 511,521 + HER17_RS02300 0.80 +0.3 511,521 + HER17_RS02300 0.80 +0.1 511,521 + HER17_RS02300 0.80 -0.2 511,522 - HER17_RS02300 0.80 +0.5 511,522 - HER17_RS02300 0.80 -0.1 511,536 + HER17_RS02300 0.81 +0.4 511,536 + HER17_RS02300 0.81 +1.3 511,536 + HER17_RS02300 0.81 -0.3 511,536 + HER17_RS02300 0.81 +0.1 511,537 - HER17_RS02300 0.81 +0.1 511,537 - HER17_RS02300 0.81 -1.2 511,537 - HER17_RS02300 0.81 -0.1 511,550 + HER17_RS02300 0.82 +0.2 511,595 - HER17_RS02300 0.84 +0.4 511,611 + HER17_RS02300 0.85 -0.3 511,612 - HER17_RS02300 0.85 -0.0 511,726 - -0.7 511,738 + +0.3 511,749 - +0.2 511,776 + -0.6 511,777 - +0.4 511,777 - +1.1 511,777 - +0.3 511,824 + -0.2 511,824 + -0.1 511,824 + +0.7 511,824 + +0.7 511,825 - +0.3 511,825 - +0.2 511,825 - +0.6 511,825 - -0.4 511,829 + +0.4 511,829 + -0.1 511,829 + +0.6 511,829 + -0.7 511,829 + -1.5 511,829 + +0.4 511,832 + +0.0 511,832 + +1.1 511,833 - +0.1 511,833 - +0.2 512,001 + +0.5 512,024 - +1.6 512,068 - +0.2 512,084 + +0.0 512,085 - -0.5 512,090 + -0.3 512,091 - +0.5 512,091 - -0.1 512,094 - -0.1 512,094 - -0.4 512,094 - -0.2 512,094 - -0.3 512,124 + +0.7 512,125 - -0.6 512,287 + HER17_RS02305 0.17 +0.3 512,287 + HER17_RS02305 0.17 -0.3 512,407 + HER17_RS02305 0.32 -1.2 512,408 - HER17_RS02305 0.32 +0.6 512,408 - HER17_RS02305 0.32 -0.6 512,408 - HER17_RS02305 0.32 -0.0 512,459 + HER17_RS02305 0.38 +0.6 512,459 + HER17_RS02305 0.38 -0.7 512,459 + HER17_RS02305 0.38 -0.6 512,459 + HER17_RS02305 0.38 -0.7 512,545 + HER17_RS02305 0.48 +0.2 512,545 + HER17_RS02305 0.48 -0.9 512,545 + HER17_RS02305 0.48 -1.4 512,545 + HER17_RS02305 0.48 +0.9 512,578 + HER17_RS02305 0.52 +0.4 512,579 - HER17_RS02305 0.52 -0.2 512,579 - HER17_RS02305 0.52 -0.1 512,631 - HER17_RS02305 0.59 -0.5 512,639 + HER17_RS02305 0.60 -0.3 512,639 + HER17_RS02305 0.60 +1.6 512,640 - HER17_RS02305 0.60 +1.0 512,640 - HER17_RS02305 0.60 -0.6 512,640 - HER17_RS02305 0.60 +0.4 512,640 - HER17_RS02305 0.60 +1.0 512,857 + HER17_RS02305 0.86 +0.8 512,858 - HER17_RS02305 0.86 -2.3 512,859 + HER17_RS02305 0.86 -0.3 512,860 - HER17_RS02305 0.86 +0.5 512,860 - HER17_RS02305 0.86 +2.8 512,860 - HER17_RS02305 0.86 +0.4 512,860 - HER17_RS02305 0.86 -0.2 512,860 - HER17_RS02305 0.86 -0.0 512,860 - HER17_RS02305 0.86 +0.8 512,992 - -0.6 513,021 - +0.8 513,087 + -0.4 513,113 + +0.8 513,113 + -0.7 513,113 + +0.1 513,113 + +0.3 513,113 + +1.5 513,114 - +0.4 513,114 - -0.2 513,114 - +0.1 513,114 - -0.7 513,118 + +0.6 513,118 + -0.8 513,118 + -0.7 513,118 + +0.1 513,118 + +0.0 513,119 - -1.2 513,119 - +0.3 513,119 - +0.2 513,119 - +0.3 513,119 - +0.6 513,126 - +0.5 513,126 - +0.7 513,126 - -1.3 513,145 - +0.2 513,145 - +0.3 513,145 - +0.6 513,145 - -0.6 513,145 - -1.8 513,145 - +2.0 513,145 - +0.3 513,182 + -0.3 513,182 + +0.2 513,182 + +0.3 513,182 + +0.1 513,182 + +0.0 513,182 + -0.9 513,248 + -0.4 513,249 - -0.6 513,255 + -0.5 513,255 + +0.5 513,256 - +0.6 513,259 + +0.2 513,259 + +0.2 513,259 + +0.1 513,259 + -0.1 513,260 - +0.9 513,260 - -0.5 513,260 - +0.3 513,264 + -0.9 513,265 - -1.4 513,265 - -0.3 513,265 - +0.6 513,269 - -0.0 513,338 + +0.5 513,338 + -0.4 513,339 - -0.1 513,356 + +0.3 513,447 - +1.1 513,447 - -0.3 513,457 + -0.2 513,570 + -0.1 513,575 + +0.2 513,576 - +0.5 513,662 + HER17_RS02310 0.10 +0.4 513,672 + HER17_RS02310 0.10 -0.3 513,858 - HER17_RS02310 0.15 +2.0 513,954 - HER17_RS02310 0.18 +0.6
Or see this region's nucleotide sequence