Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01770

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01760 and HER17_RS01765 overlap by 4 nucleotidesHER17_RS01765 and HER17_RS01770 are separated by 99 nucleotidesHER17_RS01770 and HER17_RS01775 are separated by 351 nucleotidesHER17_RS01775 and HER17_RS01780 are separated by 51 nucleotides HER17_RS01760: HER17_RS01760 - hypothetical protein, at 414,458 to 415,045 _RS01760 HER17_RS01765: HER17_RS01765 - DNA utilization family protein, at 415,042 to 415,419 _RS01765 HER17_RS01770: HER17_RS01770 - DNA uptake porin HofQ, at 415,519 to 416,793 _RS01770 HER17_RS01775: HER17_RS01775 - shikimate kinase AroK, at 417,145 to 417,666 _RS01775 HER17_RS01780: HER17_RS01780 - 3-dehydroquinate synthase, at 417,718 to 418,803 _RS01780 Position (kb) 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.573 kb on + strand, within HER17_RS01760at 414.574 kb on - strand, within HER17_RS01760at 414.574 kb on - strand, within HER17_RS01760at 414.622 kb on - strand, within HER17_RS01760at 414.680 kb on - strand, within HER17_RS01760at 414.714 kb on + strand, within HER17_RS01760at 414.715 kb on - strand, within HER17_RS01760at 414.715 kb on - strand, within HER17_RS01760at 414.769 kb on + strand, within HER17_RS01760at 414.770 kb on - strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.881 kb on + strand, within HER17_RS01760at 414.882 kb on - strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.954 kb on + strand, within HER17_RS01760at 414.993 kb on + strandat 414.994 kb on - strandat 415.014 kb on + strandat 415.015 kb on - strandat 415.051 kb on - strandat 415.051 kb on - strandat 415.146 kb on + strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.314 kb on + strand, within HER17_RS01765at 415.314 kb on + strand, within HER17_RS01765at 415.374 kb on + strand, within HER17_RS01765at 415.418 kb on - strandat 415.498 kb on + strandat 415.525 kb on - strandat 415.525 kb on - strandat 415.535 kb on + strandat 415.535 kb on + strandat 415.536 kb on - strandat 415.536 kb on - strandat 415.536 kb on - strandat 415.562 kb on + strandat 415.563 kb on - strandat 415.646 kb on + strandat 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.760 kb on + strand, within HER17_RS01770at 415.760 kb on + strand, within HER17_RS01770at 415.776 kb on + strand, within HER17_RS01770at 415.776 kb on + strand, within HER17_RS01770at 415.881 kb on - strand, within HER17_RS01770at 415.890 kb on + strand, within HER17_RS01770at 415.890 kb on + strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.913 kb on - strand, within HER17_RS01770at 415.965 kb on - strand, within HER17_RS01770at 415.965 kb on - strand, within HER17_RS01770at 416.008 kb on - strand, within HER17_RS01770at 416.008 kb on - strand, within HER17_RS01770at 416.016 kb on - strand, within HER17_RS01770at 416.090 kb on + strand, within HER17_RS01770at 416.091 kb on - strand, within HER17_RS01770at 416.091 kb on - strand, within HER17_RS01770at 416.107 kb on - strand, within HER17_RS01770at 416.115 kb on + strand, within HER17_RS01770at 416.116 kb on - strand, within HER17_RS01770at 416.291 kb on + strand, within HER17_RS01770at 416.371 kb on - strand, within HER17_RS01770at 416.453 kb on + strand, within HER17_RS01770at 416.467 kb on - strand, within HER17_RS01770at 416.497 kb on - strand, within HER17_RS01770at 416.622 kb on + strand, within HER17_RS01770at 416.630 kb on + strand, within HER17_RS01770at 416.675 kb on + strandat 416.675 kb on + strandat 416.675 kb on + strandat 416.676 kb on - strandat 416.700 kb on - strandat 416.736 kb on + strandat 416.736 kb on + strandat 416.796 kb on - strandat 416.820 kb on + strandat 416.820 kb on + strandat 416.820 kb on + strandat 416.820 kb on + strandat 416.821 kb on - strandat 416.821 kb on - strandat 416.850 kb on + strandat 416.872 kb on - strandat 416.897 kb on - strandat 416.897 kb on - strandat 416.901 kb on + strandat 416.901 kb on + strandat 416.901 kb on + strandat 416.901 kb on + strandat 416.902 kb on - strandat 416.960 kb on + strandat 416.960 kb on + strandat 416.960 kb on + strandat 416.960 kb on + strandat 416.961 kb on - strandat 416.961 kb on - strandat 416.963 kb on + strandat 416.963 kb on + strandat 416.963 kb on + strandat 416.963 kb on + strandat 416.963 kb on + strandat 416.963 kb on + strandat 416.963 kb on + strandat 416.964 kb on - strandat 416.964 kb on - strandat 417.011 kb on + strandat 417.011 kb on + strandat 417.074 kb on + strandat 417.128 kb on + strandat 417.664 kb on + strandat 417.664 kb on + strandat 417.664 kb on + strandat 417.665 kb on - strandat 417.665 kb on - strandat 417.672 kb on + strandat 417.672 kb on + strandat 417.672 kb on + strandat 417.673 kb on - strandat 417.729 kb on + strandat 417.750 kb on + strandat 417.751 kb on - strandat 417.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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414,573 + HER17_RS01760 0.20 +0.0
414,574 - HER17_RS01760 0.20 -0.0
414,574 - HER17_RS01760 0.20 -0.0
414,622 - HER17_RS01760 0.28 -0.0
414,680 - HER17_RS01760 0.38 +0.2
414,714 + HER17_RS01760 0.44 -1.5
414,715 - HER17_RS01760 0.44 -0.6
414,715 - HER17_RS01760 0.44 +0.5
414,769 + HER17_RS01760 0.53 +0.3
414,770 - HER17_RS01760 0.53 +0.1
414,807 + HER17_RS01760 0.59 +0.2
414,807 + HER17_RS01760 0.59 +0.1
414,807 + HER17_RS01760 0.59 +0.8
414,881 + HER17_RS01760 0.72 -0.2
414,882 - HER17_RS01760 0.72 +0.1
414,926 + HER17_RS01760 0.80 -0.4
414,926 + HER17_RS01760 0.80 +1.8
414,926 + HER17_RS01760 0.80 -0.0
414,926 + HER17_RS01760 0.80 -0.6
414,926 + HER17_RS01760 0.80 +0.2
414,926 + HER17_RS01760 0.80 -0.1
414,926 + HER17_RS01760 0.80 +0.5
414,926 + HER17_RS01760 0.80 -0.0
414,926 + HER17_RS01760 0.80 -0.8
414,927 - HER17_RS01760 0.80 +0.2
414,927 - HER17_RS01760 0.80 +1.4
414,927 - HER17_RS01760 0.80 -0.0
414,927 - HER17_RS01760 0.80 +0.5
414,927 - HER17_RS01760 0.80 +1.5
414,927 - HER17_RS01760 0.80 +0.1
414,927 - HER17_RS01760 0.80 -0.2
414,927 - HER17_RS01760 0.80 +0.3
414,927 - HER17_RS01760 0.80 -0.4
414,927 - HER17_RS01760 0.80 +0.3
414,927 - HER17_RS01760 0.80 +1.4
414,954 + HER17_RS01760 0.84 +0.3
414,993 + +0.4
414,994 - +0.6
415,014 + -0.3
415,015 - -0.1
415,051 - -0.5
415,051 - +0.3
415,146 + HER17_RS01765 0.28 +0.6
415,191 - HER17_RS01765 0.39 +0.9
415,191 - HER17_RS01765 0.39 -0.0
415,191 - HER17_RS01765 0.39 +1.2
415,191 - HER17_RS01765 0.39 +0.4
415,314 + HER17_RS01765 0.72 +1.1
415,314 + HER17_RS01765 0.72 -0.7
415,374 + HER17_RS01765 0.88 +1.3
415,418 - -0.2
415,498 + -0.1
415,525 - -0.0
415,525 - +0.1
415,535 + +0.6
415,535 + -1.7
415,536 - -0.8
415,536 - +0.7
415,536 - -0.0
415,562 + -0.5
415,563 - -0.2
415,646 + +0.0
415,729 - HER17_RS01770 0.16 -0.6
415,729 - HER17_RS01770 0.16 +0.7
415,729 - HER17_RS01770 0.16 +0.2
415,729 - HER17_RS01770 0.16 -0.4
415,760 + HER17_RS01770 0.19 +0.3
415,760 + HER17_RS01770 0.19 +0.2
415,776 + HER17_RS01770 0.20 +0.0
415,776 + HER17_RS01770 0.20 -1.4
415,881 - HER17_RS01770 0.28 -0.3
415,890 + HER17_RS01770 0.29 -0.0
415,890 + HER17_RS01770 0.29 +0.7
415,891 - HER17_RS01770 0.29 +1.6
415,891 - HER17_RS01770 0.29 -0.2
415,891 - HER17_RS01770 0.29 +0.7
415,891 - HER17_RS01770 0.29 +0.3
415,891 - HER17_RS01770 0.29 -0.1
415,891 - HER17_RS01770 0.29 -0.4
415,893 + HER17_RS01770 0.29 -0.6
415,893 + HER17_RS01770 0.29 -0.2
415,893 + HER17_RS01770 0.29 -1.5
415,894 - HER17_RS01770 0.29 -0.1
415,894 - HER17_RS01770 0.29 +0.8
415,894 - HER17_RS01770 0.29 +0.3
415,894 - HER17_RS01770 0.29 +0.7
415,894 - HER17_RS01770 0.29 -0.1
415,894 - HER17_RS01770 0.29 +0.3
415,894 - HER17_RS01770 0.29 +0.4
415,894 - HER17_RS01770 0.29 -0.3
415,894 - HER17_RS01770 0.29 +0.7
415,894 - HER17_RS01770 0.29 +0.1
415,912 + HER17_RS01770 0.31 -1.7
415,912 + HER17_RS01770 0.31 -0.1
415,912 + HER17_RS01770 0.31 +0.2
415,913 - HER17_RS01770 0.31 +0.8
415,965 - HER17_RS01770 0.35 +2.4
415,965 - HER17_RS01770 0.35 -0.2
416,008 - HER17_RS01770 0.38 -0.9
416,008 - HER17_RS01770 0.38 -0.5
416,016 - HER17_RS01770 0.39 +0.8
416,090 + HER17_RS01770 0.45 +0.7
416,091 - HER17_RS01770 0.45 -1.5
416,091 - HER17_RS01770 0.45 -1.7
416,107 - HER17_RS01770 0.46 -0.1
416,115 + HER17_RS01770 0.47 +1.2
416,116 - HER17_RS01770 0.47 +0.3
416,291 + HER17_RS01770 0.61 -0.8
416,371 - HER17_RS01770 0.67 +0.6
416,453 + HER17_RS01770 0.73 +0.6
416,467 - HER17_RS01770 0.74 +0.2
416,497 - HER17_RS01770 0.77 -0.1
416,622 + HER17_RS01770 0.87 -0.2
416,630 + HER17_RS01770 0.87 +1.5
416,675 + +1.7
416,675 + -0.7
416,675 + +0.3
416,676 - +0.6
416,700 - +1.1
416,736 + +1.7
416,736 + +0.1
416,796 - +0.4
416,820 + -0.4
416,820 + +0.1
416,820 + -0.2
416,820 + +0.9
416,821 - -0.0
416,821 - -0.2
416,850 + +0.4
416,872 - -0.2
416,897 - -1.5
416,897 - -0.7
416,901 + +0.3
416,901 + +1.4
416,901 + -0.9
416,901 + -1.2
416,902 - -0.1
416,960 + -0.1
416,960 + -0.2
416,960 + -1.3
416,960 + +0.5
416,961 - -0.3
416,961 - -0.9
416,963 + +0.4
416,963 + +0.0
416,963 + -2.3
416,963 + +0.3
416,963 + -0.2
416,963 + -0.3
416,963 + -1.2
416,964 - -0.5
416,964 - -0.0
417,011 + +1.1
417,011 + -1.7
417,074 + +0.3
417,128 + -0.9
417,664 + -3.1
417,664 + -2.7
417,664 + -2.6
417,665 - -0.2
417,665 - -2.0
417,672 + -1.8
417,672 + -1.2
417,672 + -2.0
417,673 - -0.9
417,729 + -1.8
417,750 + -0.2
417,751 - -1.8
417,780 - -1.6

Or see this region's nucleotide sequence