Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01465

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01460 and HER17_RS01465 are separated by 215 nucleotidesHER17_RS01465 and HER17_RS01470 are separated by 299 nucleotides HER17_RS01460: HER17_RS01460 - GntP family permease, at 334,392 to 335,768 _RS01460 HER17_RS01465: HER17_RS01465 - YhgN family NAAT transporter, at 335,984 to 336,577 _RS01465 HER17_RS01470: HER17_RS01470 - aspartate-semialdehyde dehydrogenase, at 336,877 to 337,980 _RS01470 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.995 kb on + strand, within HER17_RS01460at 334.996 kb on - strand, within HER17_RS01460at 335.062 kb on + strand, within HER17_RS01460at 335.062 kb on + strand, within HER17_RS01460at 335.081 kb on + strand, within HER17_RS01460at 335.082 kb on - strand, within HER17_RS01460at 335.082 kb on - strand, within HER17_RS01460at 335.082 kb on - strand, within HER17_RS01460at 335.159 kb on + strand, within HER17_RS01460at 335.159 kb on + strand, within HER17_RS01460at 335.159 kb on + strand, within HER17_RS01460at 335.160 kb on - strand, within HER17_RS01460at 335.160 kb on - strand, within HER17_RS01460at 335.216 kb on + strand, within HER17_RS01460at 335.217 kb on - strand, within HER17_RS01460at 335.217 kb on - strand, within HER17_RS01460at 335.217 kb on - strand, within HER17_RS01460at 335.270 kb on + strand, within HER17_RS01460at 335.270 kb on + strand, within HER17_RS01460at 335.270 kb on + strand, within HER17_RS01460at 335.270 kb on + strand, within HER17_RS01460at 335.270 kb on + strand, within HER17_RS01460at 335.270 kb on + strand, within HER17_RS01460at 335.271 kb on - strand, within HER17_RS01460at 335.271 kb on - strand, within HER17_RS01460at 335.271 kb on - strand, within HER17_RS01460at 335.271 kb on - strand, within HER17_RS01460at 335.271 kb on - strand, within HER17_RS01460at 335.271 kb on - strand, within HER17_RS01460at 335.295 kb on - strand, within HER17_RS01460at 335.438 kb on + strand, within HER17_RS01460at 335.585 kb on + strand, within HER17_RS01460at 335.757 kb on - strandat 335.813 kb on - strandat 335.827 kb on - strandat 335.842 kb on - strandat 335.842 kb on - strandat 335.852 kb on - strandat 335.934 kb on + strandat 335.935 kb on - strandat 335.947 kb on - strandat 335.985 kb on + strandat 335.985 kb on + strandat 335.995 kb on + strandat 335.996 kb on - strandat 335.997 kb on + strandat 335.997 kb on + strandat 335.998 kb on - strandat 336.047 kb on + strand, within HER17_RS01465at 336.047 kb on + strand, within HER17_RS01465at 336.047 kb on + strand, within HER17_RS01465at 336.048 kb on - strand, within HER17_RS01465at 336.292 kb on + strand, within HER17_RS01465at 336.293 kb on - strand, within HER17_RS01465at 336.497 kb on + strand, within HER17_RS01465at 336.536 kb on - strandat 336.667 kb on - strandat 336.667 kb on - strandat 336.667 kb on - strandat 336.667 kb on - strandat 336.669 kb on + strandat 336.669 kb on + strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.693 kb on + strandat 336.721 kb on + strandat 336.721 kb on + strandat 336.721 kb on + strandat 336.721 kb on + strandat 336.721 kb on + strandat 336.722 kb on - strandat 336.722 kb on - strandat 336.722 kb on - strandat 336.722 kb on - strandat 336.722 kb on - strandat 336.722 kb on - strandat 336.725 kb on + strandat 336.725 kb on + strandat 336.726 kb on - strandat 336.734 kb on + strandat 336.757 kb on + strandat 336.818 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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334,995 + HER17_RS01460 0.44 -0.2
334,996 - HER17_RS01460 0.44 -1.6
335,062 + HER17_RS01460 0.49 +0.5
335,062 + HER17_RS01460 0.49 +1.0
335,081 + HER17_RS01460 0.50 +0.8
335,082 - HER17_RS01460 0.50 -0.0
335,082 - HER17_RS01460 0.50 -0.5
335,082 - HER17_RS01460 0.50 -0.2
335,159 + HER17_RS01460 0.56 -0.4
335,159 + HER17_RS01460 0.56 -0.1
335,159 + HER17_RS01460 0.56 +0.1
335,160 - HER17_RS01460 0.56 +1.0
335,160 - HER17_RS01460 0.56 +0.3
335,216 + HER17_RS01460 0.60 -0.1
335,217 - HER17_RS01460 0.60 -0.2
335,217 - HER17_RS01460 0.60 +0.8
335,217 - HER17_RS01460 0.60 +0.7
335,270 + HER17_RS01460 0.64 -0.4
335,270 + HER17_RS01460 0.64 +0.8
335,270 + HER17_RS01460 0.64 +1.3
335,270 + HER17_RS01460 0.64 -0.7
335,270 + HER17_RS01460 0.64 +0.4
335,270 + HER17_RS01460 0.64 +0.6
335,271 - HER17_RS01460 0.64 +0.3
335,271 - HER17_RS01460 0.64 +0.8
335,271 - HER17_RS01460 0.64 +0.3
335,271 - HER17_RS01460 0.64 -0.8
335,271 - HER17_RS01460 0.64 -0.0
335,271 - HER17_RS01460 0.64 -0.3
335,295 - HER17_RS01460 0.66 +0.3
335,438 + HER17_RS01460 0.76 +0.3
335,585 + HER17_RS01460 0.87 +0.0
335,757 - +0.1
335,813 - -1.6
335,827 - -0.1
335,842 - +1.2
335,842 - +0.5
335,852 - -0.2
335,934 + +0.1
335,935 - -0.7
335,947 - +0.3
335,985 + +0.7
335,985 + -0.8
335,995 + -0.2
335,996 - +0.4
335,997 + +0.7
335,997 + +0.2
335,998 - +2.0
336,047 + HER17_RS01465 0.11 -0.0
336,047 + HER17_RS01465 0.11 +0.4
336,047 + HER17_RS01465 0.11 +0.2
336,048 - HER17_RS01465 0.11 +0.5
336,292 + HER17_RS01465 0.52 -0.1
336,293 - HER17_RS01465 0.52 +0.0
336,497 + HER17_RS01465 0.86 -0.2
336,536 - +0.6
336,667 - +0.9
336,667 - +1.0
336,667 - +0.1
336,667 - -0.1
336,669 + -0.1
336,669 + -1.2
336,670 - -0.2
336,670 - +0.5
336,670 - -0.2
336,670 - +0.0
336,670 - +1.0
336,670 - +0.3
336,670 - -0.8
336,693 + +0.8
336,721 + -0.1
336,721 + +0.3
336,721 + +0.1
336,721 + -0.7
336,721 + +0.5
336,722 - -1.1
336,722 - -3.3
336,722 - -1.5
336,722 - -1.8
336,722 - -3.1
336,722 - -3.2
336,725 + -0.7
336,725 + -1.3
336,726 - -3.3
336,734 + -0.8
336,757 + +0.9
336,818 + -0.7

Or see this region's nucleotide sequence