Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01150

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01145 and HER17_RS01150 are separated by 21 nucleotidesHER17_RS01150 and HER17_RS01155 are separated by 67 nucleotides HER17_RS01145: HER17_RS01145 - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 267,114 to 268,211 _RS01145 HER17_RS01150: HER17_RS01150 - ECA polysaccharide chain length modulation protein, at 268,233 to 269,279 _RS01150 HER17_RS01155: HER17_RS01155 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 269,347 to 270,465 _RS01155 Position (kb) 268 269 270Strain fitness (log2 ratio) -1 0 1 2at 267.269 kb on + strand, within HER17_RS01145at 267.269 kb on + strand, within HER17_RS01145at 267.270 kb on - strand, within HER17_RS01145at 267.270 kb on - strand, within HER17_RS01145at 267.270 kb on - strand, within HER17_RS01145at 267.279 kb on + strand, within HER17_RS01145at 267.296 kb on + strand, within HER17_RS01145at 267.297 kb on - strand, within HER17_RS01145at 267.297 kb on - strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.308 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.320 kb on + strand, within HER17_RS01145at 267.320 kb on + strand, within HER17_RS01145at 267.320 kb on + strand, within HER17_RS01145at 267.321 kb on - strand, within HER17_RS01145at 267.321 kb on - strand, within HER17_RS01145at 267.321 kb on - strand, within HER17_RS01145at 267.339 kb on + strand, within HER17_RS01145at 267.364 kb on + strand, within HER17_RS01145at 267.365 kb on - strand, within HER17_RS01145at 267.368 kb on + strand, within HER17_RS01145at 267.470 kb on - strand, within HER17_RS01145at 267.573 kb on - strand, within HER17_RS01145at 267.573 kb on - strand, within HER17_RS01145at 267.573 kb on - strand, within HER17_RS01145at 267.646 kb on - strand, within HER17_RS01145at 267.659 kb on + strand, within HER17_RS01145at 267.659 kb on + strand, within HER17_RS01145at 267.660 kb on - strand, within HER17_RS01145at 267.703 kb on + strand, within HER17_RS01145at 267.703 kb on + strand, within HER17_RS01145at 267.704 kb on - strand, within HER17_RS01145at 267.704 kb on - strand, within HER17_RS01145at 267.704 kb on - strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.709 kb on - strand, within HER17_RS01145at 267.720 kb on - strand, within HER17_RS01145at 267.744 kb on + strand, within HER17_RS01145at 267.744 kb on + strand, within HER17_RS01145at 267.840 kb on - strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.900 kb on + strand, within HER17_RS01145at 267.901 kb on - strand, within HER17_RS01145at 267.901 kb on - strand, within HER17_RS01145at 267.951 kb on - strand, within HER17_RS01145at 267.951 kb on - strand, within HER17_RS01145at 267.962 kb on - strand, within HER17_RS01145at 268.008 kb on - strand, within HER17_RS01145at 268.008 kb on - strand, within HER17_RS01145at 268.042 kb on + strand, within HER17_RS01145at 268.042 kb on + strand, within HER17_RS01145at 268.108 kb on + strandat 268.108 kb on + strandat 268.119 kb on + strandat 268.120 kb on - strandat 268.120 kb on - strandat 268.120 kb on - strandat 268.120 kb on - strandat 268.155 kb on - strandat 268.218 kb on - strandat 268.231 kb on + strandat 268.231 kb on + strandat 268.232 kb on - strandat 268.232 kb on - strandat 268.232 kb on - strandat 268.297 kb on + strandat 268.334 kb on - strandat 268.371 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.378 kb on - strand, within HER17_RS01150at 268.385 kb on + strand, within HER17_RS01150at 268.385 kb on + strand, within HER17_RS01150at 268.433 kb on + strand, within HER17_RS01150at 268.434 kb on - strand, within HER17_RS01150at 268.434 kb on - strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.450 kb on - strand, within HER17_RS01150at 268.450 kb on - strand, within HER17_RS01150at 268.473 kb on - strand, within HER17_RS01150at 268.521 kb on - strand, within HER17_RS01150at 268.521 kb on - strand, within HER17_RS01150at 268.536 kb on + strand, within HER17_RS01150at 268.566 kb on + strand, within HER17_RS01150at 268.567 kb on - strand, within HER17_RS01150at 268.567 kb on - strand, within HER17_RS01150at 268.603 kb on - strand, within HER17_RS01150at 268.603 kb on - strand, within HER17_RS01150at 268.605 kb on + strand, within HER17_RS01150at 268.605 kb on + strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.671 kb on - strand, within HER17_RS01150at 268.767 kb on + strand, within HER17_RS01150at 268.768 kb on - strand, within HER17_RS01150at 268.949 kb on + strand, within HER17_RS01150at 268.949 kb on + strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.952 kb on + strand, within HER17_RS01150at 268.970 kb on + strand, within HER17_RS01150at 269.067 kb on + strand, within HER17_RS01150at 269.079 kb on + strand, within HER17_RS01150at 269.079 kb on + strand, within HER17_RS01150at 269.148 kb on + strand, within HER17_RS01150at 269.149 kb on - strand, within HER17_RS01150at 269.155 kb on - strand, within HER17_RS01150at 269.354 kb on + strandat 269.354 kb on + strandat 269.354 kb on + strandat 269.354 kb on + strandat 269.500 kb on - strand, within HER17_RS01155at 269.513 kb on - strand, within HER17_RS01155at 269.526 kb on + strand, within HER17_RS01155at 269.526 kb on + strand, within HER17_RS01155at 269.556 kb on - strand, within HER17_RS01155at 269.621 kb on + strand, within HER17_RS01155at 269.621 kb on + strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.669 kb on - strand, within HER17_RS01155at 269.676 kb on + strand, within HER17_RS01155at 269.694 kb on - strand, within HER17_RS01155at 269.709 kb on + strand, within HER17_RS01155at 269.722 kb on + strand, within HER17_RS01155at 269.723 kb on - strand, within HER17_RS01155at 269.746 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.841 kb on + strand, within HER17_RS01155at 269.856 kb on + strand, within HER17_RS01155at 269.859 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.938 kb on + strand, within HER17_RS01155at 270.062 kb on + strand, within HER17_RS01155at 270.063 kb on - strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.136 kb on - strand, within HER17_RS01155at 270.163 kb on + strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.196 kb on + strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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267,269 + HER17_RS01145 0.14 +0.1
267,269 + HER17_RS01145 0.14 +0.8
267,270 - HER17_RS01145 0.14 +2.2
267,270 - HER17_RS01145 0.14 -0.3
267,270 - HER17_RS01145 0.14 +0.6
267,279 + HER17_RS01145 0.15 -0.3
267,296 + HER17_RS01145 0.17 +2.1
267,297 - HER17_RS01145 0.17 +0.1
267,297 - HER17_RS01145 0.17 +0.1
267,300 + HER17_RS01145 0.17 -0.1
267,300 + HER17_RS01145 0.17 +0.4
267,300 + HER17_RS01145 0.17 +0.9
267,300 + HER17_RS01145 0.17 +0.6
267,308 + HER17_RS01145 0.18 +0.9
267,318 + HER17_RS01145 0.19 -0.6
267,318 + HER17_RS01145 0.19 +1.0
267,318 + HER17_RS01145 0.19 +0.3
267,318 + HER17_RS01145 0.19 +0.2
267,318 + HER17_RS01145 0.19 +0.9
267,318 + HER17_RS01145 0.19 +0.7
267,318 + HER17_RS01145 0.19 +0.0
267,318 + HER17_RS01145 0.19 +0.5
267,318 + HER17_RS01145 0.19 -0.0
267,318 + HER17_RS01145 0.19 +0.7
267,319 - HER17_RS01145 0.19 +0.0
267,319 - HER17_RS01145 0.19 +0.3
267,319 - HER17_RS01145 0.19 -0.2
267,319 - HER17_RS01145 0.19 +0.0
267,319 - HER17_RS01145 0.19 +0.7
267,319 - HER17_RS01145 0.19 -0.3
267,319 - HER17_RS01145 0.19 -1.5
267,319 - HER17_RS01145 0.19 +0.3
267,319 - HER17_RS01145 0.19 +1.2
267,319 - HER17_RS01145 0.19 +0.1
267,319 - HER17_RS01145 0.19 -0.6
267,319 - HER17_RS01145 0.19 -0.3
267,319 - HER17_RS01145 0.19 +0.1
267,319 - HER17_RS01145 0.19 -1.1
267,319 - HER17_RS01145 0.19 +0.3
267,320 + HER17_RS01145 0.19 +0.5
267,320 + HER17_RS01145 0.19 +0.0
267,320 + HER17_RS01145 0.19 +0.2
267,321 - HER17_RS01145 0.19 -0.0
267,321 - HER17_RS01145 0.19 +0.1
267,321 - HER17_RS01145 0.19 +0.7
267,339 + HER17_RS01145 0.20 -0.3
267,364 + HER17_RS01145 0.23 -0.5
267,365 - HER17_RS01145 0.23 -0.9
267,368 + HER17_RS01145 0.23 +0.8
267,470 - HER17_RS01145 0.32 -0.3
267,573 - HER17_RS01145 0.42 -0.0
267,573 - HER17_RS01145 0.42 +0.3
267,573 - HER17_RS01145 0.42 +0.9
267,646 - HER17_RS01145 0.48 +0.1
267,659 + HER17_RS01145 0.50 +0.7
267,659 + HER17_RS01145 0.50 -0.8
267,660 - HER17_RS01145 0.50 -0.1
267,703 + HER17_RS01145 0.54 +0.7
267,703 + HER17_RS01145 0.54 +0.8
267,704 - HER17_RS01145 0.54 -0.0
267,704 - HER17_RS01145 0.54 +0.6
267,704 - HER17_RS01145 0.54 +0.4
267,708 + HER17_RS01145 0.54 +1.0
267,708 + HER17_RS01145 0.54 +0.4
267,708 + HER17_RS01145 0.54 +1.3
267,708 + HER17_RS01145 0.54 +0.8
267,708 + HER17_RS01145 0.54 -0.5
267,708 + HER17_RS01145 0.54 +0.7
267,709 - HER17_RS01145 0.54 +0.4
267,720 - HER17_RS01145 0.55 -0.5
267,744 + HER17_RS01145 0.57 +0.1
267,744 + HER17_RS01145 0.57 +0.1
267,840 - HER17_RS01145 0.66 +0.2
267,896 + HER17_RS01145 0.71 -0.1
267,896 + HER17_RS01145 0.71 +0.8
267,896 + HER17_RS01145 0.71 +0.1
267,896 + HER17_RS01145 0.71 +0.7
267,896 + HER17_RS01145 0.71 +0.4
267,896 + HER17_RS01145 0.71 +1.6
267,896 + HER17_RS01145 0.71 +0.5
267,897 - HER17_RS01145 0.71 +0.2
267,897 - HER17_RS01145 0.71 +0.2
267,897 - HER17_RS01145 0.71 +1.3
267,897 - HER17_RS01145 0.71 -1.7
267,900 + HER17_RS01145 0.72 -0.6
267,901 - HER17_RS01145 0.72 -0.5
267,901 - HER17_RS01145 0.72 +1.5
267,951 - HER17_RS01145 0.76 +0.3
267,951 - HER17_RS01145 0.76 -0.8
267,962 - HER17_RS01145 0.77 +0.3
268,008 - HER17_RS01145 0.81 -0.0
268,008 - HER17_RS01145 0.81 -0.2
268,042 + HER17_RS01145 0.85 -0.1
268,042 + HER17_RS01145 0.85 -0.5
268,108 + +1.6
268,108 + +0.2
268,119 + +1.2
268,120 - -0.2
268,120 - +0.5
268,120 - +0.5
268,120 - -0.7
268,155 - +0.7
268,218 - -0.1
268,231 + -0.3
268,231 + -1.5
268,232 - +0.3
268,232 - +0.4
268,232 - +0.1
268,297 + -0.4
268,334 - +0.2
268,371 + HER17_RS01150 0.13 -0.4
268,377 + HER17_RS01150 0.14 -0.2
268,377 + HER17_RS01150 0.14 -0.2
268,377 + HER17_RS01150 0.14 -0.3
268,378 - HER17_RS01150 0.14 +1.0
268,385 + HER17_RS01150 0.15 -1.2
268,385 + HER17_RS01150 0.15 -0.4
268,433 + HER17_RS01150 0.19 -0.3
268,434 - HER17_RS01150 0.19 -0.2
268,434 - HER17_RS01150 0.19 -0.7
268,438 + HER17_RS01150 0.20 +0.0
268,438 + HER17_RS01150 0.20 +0.9
268,438 + HER17_RS01150 0.20 -0.1
268,438 + HER17_RS01150 0.20 +1.2
268,439 - HER17_RS01150 0.20 +1.4
268,439 - HER17_RS01150 0.20 +0.3
268,439 - HER17_RS01150 0.20 +0.7
268,450 - HER17_RS01150 0.21 +0.1
268,450 - HER17_RS01150 0.21 -0.9
268,473 - HER17_RS01150 0.23 +0.4
268,521 - HER17_RS01150 0.28 -0.3
268,521 - HER17_RS01150 0.28 -0.9
268,536 + HER17_RS01150 0.29 -0.8
268,566 + HER17_RS01150 0.32 -0.2
268,567 - HER17_RS01150 0.32 -1.1
268,567 - HER17_RS01150 0.32 +0.4
268,603 - HER17_RS01150 0.35 +0.2
268,603 - HER17_RS01150 0.35 -1.3
268,605 + HER17_RS01150 0.36 -1.1
268,605 + HER17_RS01150 0.36 +0.2
268,606 - HER17_RS01150 0.36 +0.2
268,606 - HER17_RS01150 0.36 +0.5
268,606 - HER17_RS01150 0.36 +0.5
268,606 - HER17_RS01150 0.36 +1.2
268,607 + HER17_RS01150 0.36 -0.4
268,607 + HER17_RS01150 0.36 +0.1
268,607 + HER17_RS01150 0.36 -0.0
268,607 + HER17_RS01150 0.36 +0.2
268,608 - HER17_RS01150 0.36 +0.5
268,608 - HER17_RS01150 0.36 -0.4
268,608 - HER17_RS01150 0.36 +0.5
268,608 - HER17_RS01150 0.36 -0.7
268,670 + HER17_RS01150 0.42 +0.3
268,670 + HER17_RS01150 0.42 -1.1
268,670 + HER17_RS01150 0.42 -0.3
268,671 - HER17_RS01150 0.42 +0.1
268,767 + HER17_RS01150 0.51 +0.7
268,768 - HER17_RS01150 0.51 +0.4
268,949 + HER17_RS01150 0.68 -1.1
268,949 + HER17_RS01150 0.68 +0.3
268,950 - HER17_RS01150 0.68 -0.8
268,950 - HER17_RS01150 0.68 +0.4
268,950 - HER17_RS01150 0.68 +0.2
268,950 - HER17_RS01150 0.68 +0.3
268,952 + HER17_RS01150 0.69 -0.5
268,970 + HER17_RS01150 0.70 +0.5
269,067 + HER17_RS01150 0.80 -0.8
269,079 + HER17_RS01150 0.81 -0.6
269,079 + HER17_RS01150 0.81 +0.4
269,148 + HER17_RS01150 0.87 +0.6
269,149 - HER17_RS01150 0.87 +0.4
269,155 - HER17_RS01150 0.88 +0.2
269,354 + -0.1
269,354 + +0.2
269,354 + -0.1
269,354 + +0.1
269,500 - HER17_RS01155 0.14 +0.0
269,513 - HER17_RS01155 0.15 -1.0
269,526 + HER17_RS01155 0.16 +0.3
269,526 + HER17_RS01155 0.16 -0.3
269,556 - HER17_RS01155 0.19 +0.6
269,621 + HER17_RS01155 0.24 +0.4
269,621 + HER17_RS01155 0.24 -0.2
269,622 - HER17_RS01155 0.25 +0.3
269,622 - HER17_RS01155 0.25 -0.1
269,669 - HER17_RS01155 0.29 +0.4
269,676 + HER17_RS01155 0.29 +1.1
269,694 - HER17_RS01155 0.31 +0.5
269,709 + HER17_RS01155 0.32 +0.4
269,722 + HER17_RS01155 0.34 +1.8
269,723 - HER17_RS01155 0.34 +0.8
269,746 - HER17_RS01155 0.36 -0.1
269,777 - HER17_RS01155 0.38 +0.2
269,777 - HER17_RS01155 0.38 +0.3
269,777 - HER17_RS01155 0.38 +0.6
269,777 - HER17_RS01155 0.38 +0.1
269,841 + HER17_RS01155 0.44 +0.7
269,856 + HER17_RS01155 0.45 -0.4
269,859 + HER17_RS01155 0.46 +0.7
269,927 + HER17_RS01155 0.52 +0.6
269,927 + HER17_RS01155 0.52 -0.8
269,938 + HER17_RS01155 0.53 +0.3
270,062 + HER17_RS01155 0.64 +0.2
270,063 - HER17_RS01155 0.64 +1.5
270,093 + HER17_RS01155 0.67 +0.1
270,093 + HER17_RS01155 0.67 +0.2
270,136 - HER17_RS01155 0.71 +0.2
270,163 + HER17_RS01155 0.73 +0.4
270,164 - HER17_RS01155 0.73 +0.1
270,164 - HER17_RS01155 0.73 +0.9
270,178 + HER17_RS01155 0.74 +0.3
270,178 + HER17_RS01155 0.74 +0.4
270,178 + HER17_RS01155 0.74 +0.2
270,179 - HER17_RS01155 0.74 +0.7
270,179 - HER17_RS01155 0.74 +0.1
270,196 + HER17_RS01155 0.76 +0.9
270,197 - HER17_RS01155 0.76 +1.2
270,197 - HER17_RS01155 0.76 +0.6
270,197 - HER17_RS01155 0.76 +0.7
270,197 - HER17_RS01155 0.76 +0.2
270,197 - HER17_RS01155 0.76 +0.5

Or see this region's nucleotide sequence