Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00325

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00320 and HER17_RS00325 are separated by 162 nucleotidesHER17_RS00325 and HER17_RS00330 are separated by 213 nucleotides HER17_RS00320: HER17_RS00320 - aldose 1-epimerase family protein, at 71,370 to 72,578 _RS00320 HER17_RS00325: HER17_RS00325 - O-acetylserine/cysteine exporter, at 72,741 to 73,652 _RS00325 HER17_RS00330: HER17_RS00330 - gamma-glutamyltransferase, at 73,866 to 75,644 _RS00330 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.970 kb on + strand, within HER17_RS00320at 71.971 kb on - strand, within HER17_RS00320at 72.027 kb on + strand, within HER17_RS00320at 72.039 kb on + strand, within HER17_RS00320at 72.048 kb on - strand, within HER17_RS00320at 72.051 kb on + strand, within HER17_RS00320at 72.051 kb on + strand, within HER17_RS00320at 72.052 kb on - strand, within HER17_RS00320at 72.129 kb on - strand, within HER17_RS00320at 72.168 kb on + strand, within HER17_RS00320at 72.169 kb on - strand, within HER17_RS00320at 72.212 kb on + strand, within HER17_RS00320at 72.237 kb on - strand, within HER17_RS00320at 72.354 kb on + strand, within HER17_RS00320at 72.354 kb on + strand, within HER17_RS00320at 72.354 kb on + strand, within HER17_RS00320at 72.355 kb on - strand, within HER17_RS00320at 72.355 kb on - strand, within HER17_RS00320at 72.355 kb on - strand, within HER17_RS00320at 72.380 kb on + strand, within HER17_RS00320at 72.381 kb on - strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.385 kb on - strand, within HER17_RS00320at 72.385 kb on - strand, within HER17_RS00320at 72.433 kb on + strand, within HER17_RS00320at 72.468 kb on + strandat 72.468 kb on + strandat 72.468 kb on + strandat 72.482 kb on + strandat 72.482 kb on + strandat 72.539 kb on + strandat 72.539 kb on + strandat 72.540 kb on - strandat 72.577 kb on - strandat 72.583 kb on + strandat 72.583 kb on + strandat 72.583 kb on + strandat 72.583 kb on + strandat 72.584 kb on - strandat 72.584 kb on - strandat 72.584 kb on - strandat 72.584 kb on - strandat 72.637 kb on + strandat 72.637 kb on + strandat 72.652 kb on - strandat 72.660 kb on - strandat 72.660 kb on - strandat 72.679 kb on + strandat 72.680 kb on - strandat 72.690 kb on + strandat 72.690 kb on + strandat 72.691 kb on - strandat 72.710 kb on + strandat 72.710 kb on + strandat 72.710 kb on + strandat 72.711 kb on - strandat 72.721 kb on + strandat 72.721 kb on + strandat 72.721 kb on + strandat 72.784 kb on + strandat 72.842 kb on - strand, within HER17_RS00325at 72.853 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.930 kb on + strand, within HER17_RS00325at 72.931 kb on - strand, within HER17_RS00325at 72.935 kb on + strand, within HER17_RS00325at 72.935 kb on + strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 73.015 kb on + strand, within HER17_RS00325at 73.016 kb on - strand, within HER17_RS00325at 73.019 kb on - strand, within HER17_RS00325at 73.173 kb on - strand, within HER17_RS00325at 73.235 kb on + strand, within HER17_RS00325at 73.344 kb on - strand, within HER17_RS00325at 73.344 kb on - strand, within HER17_RS00325at 73.361 kb on + strand, within HER17_RS00325at 73.361 kb on + strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.366 kb on + strand, within HER17_RS00325at 73.367 kb on - strand, within HER17_RS00325at 73.393 kb on + strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.404 kb on + strand, within HER17_RS00325at 73.404 kb on + strand, within HER17_RS00325at 73.583 kb on + strandat 73.584 kb on - strandat 73.627 kb on + strandat 73.628 kb on - strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.676 kb on + strandat 73.701 kb on + strandat 73.709 kb on + strandat 73.736 kb on + strandat 73.745 kb on + strandat 73.827 kb on - strandat 73.873 kb on + strandat 74.001 kb on + strandat 74.093 kb on - strand, within HER17_RS00330at 74.130 kb on - strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.212 kb on - strand, within HER17_RS00330at 74.212 kb on - strand, within HER17_RS00330at 74.212 kb on - strand, within HER17_RS00330at 74.259 kb on + strand, within HER17_RS00330at 74.357 kb on + strand, within HER17_RS00330at 74.358 kb on - strand, within HER17_RS00330at 74.562 kb on + strand, within HER17_RS00330at 74.563 kb on - strand, within HER17_RS00330at 74.644 kb on - strand, within HER17_RS00330

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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71,820 + HER17_RS00320 0.37 +0.4
71,820 + HER17_RS00320 0.37 -0.4
71,820 + HER17_RS00320 0.37 -0.1
71,820 + HER17_RS00320 0.37 -0.6
71,820 + HER17_RS00320 0.37 -0.3
71,820 + HER17_RS00320 0.37 -0.1
71,821 - HER17_RS00320 0.37 +0.4
71,821 - HER17_RS00320 0.37 -0.1
71,821 - HER17_RS00320 0.37 +0.7
71,821 - HER17_RS00320 0.37 +0.6
71,821 - HER17_RS00320 0.37 -0.1
71,821 - HER17_RS00320 0.37 -0.2
71,970 + HER17_RS00320 0.50 -0.6
71,971 - HER17_RS00320 0.50 -0.6
72,027 + HER17_RS00320 0.54 +0.6
72,039 + HER17_RS00320 0.55 +0.2
72,048 - HER17_RS00320 0.56 -0.2
72,051 + HER17_RS00320 0.56 +0.0
72,051 + HER17_RS00320 0.56 +0.1
72,052 - HER17_RS00320 0.56 -0.6
72,129 - HER17_RS00320 0.63 +0.3
72,168 + HER17_RS00320 0.66 +0.7
72,169 - HER17_RS00320 0.66 -0.4
72,212 + HER17_RS00320 0.70 +0.6
72,237 - HER17_RS00320 0.72 +0.7
72,354 + HER17_RS00320 0.81 -0.8
72,354 + HER17_RS00320 0.81 -1.2
72,354 + HER17_RS00320 0.81 -0.2
72,355 - HER17_RS00320 0.81 +0.7
72,355 - HER17_RS00320 0.81 +0.1
72,355 - HER17_RS00320 0.81 +1.1
72,380 + HER17_RS00320 0.84 +0.4
72,381 - HER17_RS00320 0.84 -0.3
72,384 + HER17_RS00320 0.84 -0.1
72,384 + HER17_RS00320 0.84 -0.1
72,384 + HER17_RS00320 0.84 -0.1
72,384 + HER17_RS00320 0.84 -0.7
72,384 + HER17_RS00320 0.84 -1.7
72,384 + HER17_RS00320 0.84 -1.3
72,385 - HER17_RS00320 0.84 +0.5
72,385 - HER17_RS00320 0.84 -1.2
72,433 + HER17_RS00320 0.88 -0.1
72,468 + -0.3
72,468 + +0.1
72,468 + +0.1
72,482 + +0.2
72,482 + -0.1
72,539 + -0.1
72,539 + -1.2
72,540 - +0.2
72,577 - -0.8
72,583 + +0.3
72,583 + +0.1
72,583 + +0.4
72,583 + +0.3
72,584 - +1.8
72,584 - +0.3
72,584 - +0.2
72,584 - +0.5
72,637 + +0.1
72,637 + +0.3
72,652 - +0.8
72,660 - -0.1
72,660 - +0.1
72,679 + -1.7
72,680 - -0.1
72,690 + -0.7
72,690 + -0.3
72,691 - -0.1
72,710 + -0.4
72,710 + -0.7
72,710 + +0.6
72,711 - +0.3
72,721 + -0.3
72,721 + -3.1
72,721 + +1.5
72,784 + -0.8
72,842 - HER17_RS00325 0.11 -0.5
72,853 + HER17_RS00325 0.12 -0.3
72,905 + HER17_RS00325 0.18 -0.2
72,905 + HER17_RS00325 0.18 +0.8
72,905 + HER17_RS00325 0.18 +0.2
72,906 - HER17_RS00325 0.18 +0.1
72,906 - HER17_RS00325 0.18 +0.1
72,906 - HER17_RS00325 0.18 +0.3
72,906 - HER17_RS00325 0.18 +0.0
72,930 + HER17_RS00325 0.21 +0.2
72,931 - HER17_RS00325 0.21 -0.2
72,935 + HER17_RS00325 0.21 -0.6
72,935 + HER17_RS00325 0.21 -1.1
72,936 - HER17_RS00325 0.21 -0.7
72,936 - HER17_RS00325 0.21 +0.4
72,936 - HER17_RS00325 0.21 +0.6
73,015 + HER17_RS00325 0.30 +0.7
73,016 - HER17_RS00325 0.30 +0.5
73,019 - HER17_RS00325 0.30 -0.8
73,173 - HER17_RS00325 0.47 -0.1
73,235 + HER17_RS00325 0.54 -0.8
73,344 - HER17_RS00325 0.66 +2.1
73,344 - HER17_RS00325 0.66 +0.7
73,361 + HER17_RS00325 0.68 -0.5
73,361 + HER17_RS00325 0.68 +0.1
73,362 - HER17_RS00325 0.68 +0.5
73,362 - HER17_RS00325 0.68 -0.5
73,362 - HER17_RS00325 0.68 -0.1
73,366 + HER17_RS00325 0.69 +0.1
73,367 - HER17_RS00325 0.69 +0.0
73,393 + HER17_RS00325 0.71 -1.0
73,394 - HER17_RS00325 0.72 -1.0
73,394 - HER17_RS00325 0.72 -0.1
73,394 - HER17_RS00325 0.72 +0.3
73,394 - HER17_RS00325 0.72 +0.1
73,394 - HER17_RS00325 0.72 -0.5
73,404 + HER17_RS00325 0.73 +0.1
73,404 + HER17_RS00325 0.73 +0.6
73,583 + -0.0
73,584 - -1.5
73,627 + +1.1
73,628 - +0.0
73,657 + -0.5
73,657 + +0.3
73,657 + -0.3
73,657 + +0.0
73,657 + +0.1
73,657 + -0.8
73,658 - -0.3
73,658 - -0.1
73,658 - -0.1
73,658 - +0.3
73,658 - -0.1
73,658 - -0.2
73,658 - -1.3
73,676 + +0.1
73,701 + -0.4
73,709 + -0.7
73,736 + +1.0
73,745 + -1.5
73,827 - -1.1
73,873 + +0.1
74,001 + -0.5
74,093 - HER17_RS00330 0.13 +0.2
74,130 - HER17_RS00330 0.15 -0.5
74,211 + HER17_RS00330 0.19 -0.6
74,211 + HER17_RS00330 0.19 -0.6
74,211 + HER17_RS00330 0.19 -1.8
74,211 + HER17_RS00330 0.19 +1.5
74,211 + HER17_RS00330 0.19 -0.3
74,212 - HER17_RS00330 0.19 +0.2
74,212 - HER17_RS00330 0.19 +0.3
74,212 - HER17_RS00330 0.19 -0.1
74,259 + HER17_RS00330 0.22 +0.1
74,357 + HER17_RS00330 0.28 +0.9
74,358 - HER17_RS00330 0.28 +0.1
74,562 + HER17_RS00330 0.39 -0.1
74,563 - HER17_RS00330 0.39 -1.1
74,644 - HER17_RS00330 0.44 +0.8

Or see this region's nucleotide sequence