Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00100 and HER17_RS00105 are separated by 1 nucleotides HER17_RS00105 and HER17_RS00110 overlap by 1 nucleotides HER17_RS00110 and HER17_RS00115 overlap by 4 nucleotides
HER17_RS00100: HER17_RS00100 - nucleoside hydrolase, at 21,351 to 22,304
_RS00100
HER17_RS00105: HER17_RS00105 - nucleoside hydrolase, at 22,306 to 23,295
_RS00105
HER17_RS00110: HER17_RS00110 - ABC transporter permease, at 23,295 to 24,272
_RS00110
HER17_RS00115: HER17_RS00115 - ABC transporter permease, at 24,269 to 25,177
_RS00115
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2 at 21.317 kb on + strand at 21.317 kb on + strand at 21.317 kb on + strand at 21.317 kb on + strand at 21.318 kb on - strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.361 kb on + strand at 21.361 kb on + strand at 21.362 kb on - strand at 21.362 kb on - strand at 21.365 kb on + strand at 21.365 kb on + strand at 21.365 kb on + strand at 21.365 kb on + strand at 21.366 kb on - strand at 21.366 kb on - strand at 21.368 kb on + strand at 21.368 kb on + strand at 21.368 kb on + strand at 21.369 kb on - strand at 21.371 kb on + strand at 21.372 kb on - strand at 21.392 kb on - strand at 21.392 kb on - strand at 21.392 kb on - strand at 21.412 kb on + strand at 21.412 kb on + strand at 21.412 kb on + strand at 21.412 kb on + strand at 21.412 kb on + strand at 21.412 kb on + strand at 21.413 kb on - strand at 21.413 kb on - strand at 21.413 kb on - strand at 21.579 kb on - strand, within HER17_RS00100 at 21.672 kb on - strand, within HER17_RS00100 at 21.686 kb on + strand, within HER17_RS00100 at 21.686 kb on + strand, within HER17_RS00100 at 21.726 kb on - strand, within HER17_RS00100 at 21.726 kb on - strand, within HER17_RS00100 at 21.726 kb on - strand, within HER17_RS00100 at 21.765 kb on - strand, within HER17_RS00100 at 21.860 kb on + strand, within HER17_RS00100 at 22.037 kb on + strand, within HER17_RS00100 at 22.037 kb on + strand, within HER17_RS00100 at 22.037 kb on + strand, within HER17_RS00100 at 22.037 kb on + strand, within HER17_RS00100 at 22.075 kb on + strand, within HER17_RS00100 at 22.165 kb on + strand, within HER17_RS00100 at 22.165 kb on + strand, within HER17_RS00100 at 22.165 kb on + strand, within HER17_RS00100 at 22.165 kb on + strand, within HER17_RS00100 at 22.166 kb on - strand, within HER17_RS00100 at 22.166 kb on - strand, within HER17_RS00100 at 22.166 kb on - strand, within HER17_RS00100 at 22.166 kb on - strand, within HER17_RS00100 at 22.166 kb on - strand, within HER17_RS00100 at 22.241 kb on - strand at 22.276 kb on + strand at 22.276 kb on + strand at 22.277 kb on - strand at 22.287 kb on + strand at 22.323 kb on + strand at 22.323 kb on + strand at 22.323 kb on + strand at 22.324 kb on - strand at 22.324 kb on - strand at 22.324 kb on - strand at 22.333 kb on - strand at 22.359 kb on - strand at 22.427 kb on + strand, within HER17_RS00105 at 22.428 kb on - strand, within HER17_RS00105 at 22.542 kb on + strand, within HER17_RS00105 at 22.546 kb on + strand, within HER17_RS00105 at 22.546 kb on + strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.555 kb on - strand, within HER17_RS00105 at 22.662 kb on + strand, within HER17_RS00105 at 22.743 kb on + strand, within HER17_RS00105 at 22.776 kb on + strand, within HER17_RS00105 at 22.812 kb on + strand, within HER17_RS00105 at 22.980 kb on + strand, within HER17_RS00105 at 23.103 kb on - strand, within HER17_RS00105 at 23.103 kb on - strand, within HER17_RS00105 at 23.146 kb on + strand, within HER17_RS00105 at 23.265 kb on + strand at 23.265 kb on + strand at 23.265 kb on + strand at 23.304 kb on + strand at 23.348 kb on + strand at 23.348 kb on + strand at 23.349 kb on - strand at 23.349 kb on - strand at 23.349 kb on - strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.369 kb on - strand at 23.369 kb on - strand at 23.377 kb on - strand at 23.388 kb on - strand at 23.399 kb on + strand, within HER17_RS00110 at 23.534 kb on + strand, within HER17_RS00110 at 23.541 kb on - strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.647 kb on - strand, within HER17_RS00110 at 23.712 kb on - strand, within HER17_RS00110 at 23.873 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.097 kb on - strand, within HER17_RS00110 at 24.097 kb on - strand, within HER17_RS00110 at 24.168 kb on + strand, within HER17_RS00110 at 24.168 kb on + strand, within HER17_RS00110 at 24.203 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.226 kb on - strand at 24.226 kb on - strand at 24.226 kb on - strand at 24.280 kb on + strand at 24.281 kb on - strand at 24.281 kb on - strand at 24.285 kb on + strand at 24.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 21,317 + +1.3 21,317 + -0.9 21,317 + +0.4 21,317 + +0.4 21,318 - +1.0 21,321 + +0.9 21,321 + +0.0 21,321 + +0.5 21,321 + +0.3 21,322 - +0.3 21,322 - +0.1 21,322 - +0.6 21,361 + +0.2 21,361 + +0.6 21,362 - +0.9 21,362 - +0.2 21,365 + +0.7 21,365 + +0.2 21,365 + +0.2 21,365 + +0.5 21,366 - -0.7 21,366 - +0.3 21,368 + -0.7 21,368 + -0.5 21,368 + +0.0 21,369 - +0.7 21,371 + +0.1 21,372 - +1.9 21,392 - +0.3 21,392 - -2.2 21,392 - +0.6 21,412 + +0.1 21,412 + -0.5 21,412 + +1.5 21,412 + -1.0 21,412 + +0.5 21,412 + +0.4 21,413 - +0.7 21,413 - +0.3 21,413 - -0.2 21,579 - HER17_RS00100 0.24 -1.1 21,672 - HER17_RS00100 0.34 +0.9 21,686 + HER17_RS00100 0.35 -0.5 21,686 + HER17_RS00100 0.35 -0.3 21,726 - HER17_RS00100 0.39 +1.2 21,726 - HER17_RS00100 0.39 +0.7 21,726 - HER17_RS00100 0.39 +0.8 21,765 - HER17_RS00100 0.43 -0.1 21,860 + HER17_RS00100 0.53 +0.2 22,037 + HER17_RS00100 0.72 -0.9 22,037 + HER17_RS00100 0.72 +0.4 22,037 + HER17_RS00100 0.72 +0.2 22,037 + HER17_RS00100 0.72 +0.3 22,075 + HER17_RS00100 0.76 -0.1 22,165 + HER17_RS00100 0.85 +0.8 22,165 + HER17_RS00100 0.85 -1.0 22,165 + HER17_RS00100 0.85 +0.0 22,165 + HER17_RS00100 0.85 +0.2 22,166 - HER17_RS00100 0.85 -1.4 22,166 - HER17_RS00100 0.85 -0.0 22,166 - HER17_RS00100 0.85 -0.1 22,166 - HER17_RS00100 0.85 +0.3 22,166 - HER17_RS00100 0.85 +0.3 22,241 - -0.2 22,276 + +0.9 22,276 + +0.1 22,277 - +0.5 22,287 + +0.2 22,323 + +0.7 22,323 + +0.1 22,323 + -0.1 22,324 - +1.2 22,324 - +0.9 22,324 - +0.0 22,333 - +0.1 22,359 - +0.9 22,427 + HER17_RS00105 0.12 -0.8 22,428 - HER17_RS00105 0.12 +0.3 22,542 + HER17_RS00105 0.24 -2.0 22,546 + HER17_RS00105 0.24 -0.1 22,546 + HER17_RS00105 0.24 +0.7 22,547 - HER17_RS00105 0.24 +0.8 22,547 - HER17_RS00105 0.24 +0.3 22,547 - HER17_RS00105 0.24 +0.3 22,547 - HER17_RS00105 0.24 -0.8 22,547 - HER17_RS00105 0.24 +1.2 22,547 - HER17_RS00105 0.24 +0.1 22,547 - HER17_RS00105 0.24 +0.3 22,547 - HER17_RS00105 0.24 +0.4 22,555 - HER17_RS00105 0.25 +1.0 22,662 + HER17_RS00105 0.36 -0.6 22,743 + HER17_RS00105 0.44 -0.6 22,776 + HER17_RS00105 0.47 +0.0 22,812 + HER17_RS00105 0.51 +0.5 22,980 + HER17_RS00105 0.68 +0.6 23,103 - HER17_RS00105 0.81 +0.0 23,103 - HER17_RS00105 0.81 +0.8 23,146 + HER17_RS00105 0.85 +0.0 23,265 + +0.1 23,265 + -0.5 23,265 + -0.3 23,304 + -0.2 23,348 + +0.0 23,348 + +0.1 23,349 - -0.8 23,349 - +2.1 23,349 - -0.2 23,368 + -0.1 23,368 + +0.1 23,368 + -0.0 23,368 + -0.3 23,368 + +0.3 23,369 - +0.1 23,369 - -1.5 23,377 - +0.9 23,388 - +0.2 23,399 + HER17_RS00110 0.11 -0.2 23,534 + HER17_RS00110 0.24 -0.2 23,541 - HER17_RS00110 0.25 +1.9 23,646 + HER17_RS00110 0.36 +0.4 23,646 + HER17_RS00110 0.36 -1.2 23,646 + HER17_RS00110 0.36 +0.2 23,647 - HER17_RS00110 0.36 -0.4 23,712 - HER17_RS00110 0.43 +0.5 23,873 + HER17_RS00110 0.59 +0.4 23,949 + HER17_RS00110 0.67 -0.5 23,949 + HER17_RS00110 0.67 +0.1 23,949 + HER17_RS00110 0.67 -1.7 23,949 + HER17_RS00110 0.67 -0.9 23,949 + HER17_RS00110 0.67 +0.2 23,949 + HER17_RS00110 0.67 -1.2 23,950 - HER17_RS00110 0.67 +0.4 23,950 - HER17_RS00110 0.67 -0.9 23,950 - HER17_RS00110 0.67 -2.2 23,950 - HER17_RS00110 0.67 -0.1 24,096 + HER17_RS00110 0.82 -0.3 24,096 + HER17_RS00110 0.82 -1.9 24,096 + HER17_RS00110 0.82 -0.7 24,096 + HER17_RS00110 0.82 +0.3 24,097 - HER17_RS00110 0.82 +0.3 24,097 - HER17_RS00110 0.82 -0.3 24,168 + HER17_RS00110 0.89 +0.4 24,168 + HER17_RS00110 0.89 -0.1 24,203 + +0.5 24,225 + -0.2 24,225 + +0.2 24,225 + +0.5 24,225 + -1.0 24,225 + +0.7 24,226 - -0.6 24,226 - +0.1 24,226 - +1.3 24,280 + -1.1 24,281 - -0.0 24,281 - +0.6 24,285 + -1.2 24,286 - -0.1
Or see this region's nucleotide sequence