Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21375 and HER17_RS21380 are separated by 53 nucleotides HER17_RS21380 and HER17_RS21385 are separated by 18 nucleotides HER17_RS21385 and HER17_RS21390 are separated by 5 nucleotides HER17_RS21390 and HER17_RS21395 overlap by 1 nucleotides
HER17_RS21375: HER17_RS21375 - guanylate kinase, at 4,790,458 to 4,791,081
_RS21375
HER17_RS21380: HER17_RS21380 - DNA-directed RNA polymerase subunit omega, at 4,791,135 to 4,791,410
_RS21380
HER17_RS21385: HER17_RS21385 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 4,791,429 to 4,793,528
_RS21385
HER17_RS21390: HER17_RS21390 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 4,793,534 to 4,794,226
_RS21390
HER17_RS21395: HER17_RS21395 - ATP-dependent DNA helicase RecG, at 4,794,226 to 4,796,307
_RS21395
Position (kb) 4791
4792
4793
4794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4790.446 kb on + strand at 4791.068 kb on + strand at 4791.068 kb on + strand at 4791.068 kb on + strand at 4791.094 kb on + strand at 4791.126 kb on + strand at 4791.126 kb on + strand at 4791.134 kb on + strand at 4791.145 kb on + strand at 4791.145 kb on + strand at 4791.145 kb on + strand at 4791.145 kb on + strand at 4791.270 kb on + strand, within HER17_RS21380 at 4791.270 kb on + strand, within HER17_RS21380 at 4791.270 kb on + strand, within HER17_RS21380 at 4791.270 kb on + strand, within HER17_RS21380 at 4791.270 kb on + strand, within HER17_RS21380 at 4791.270 kb on + strand, within HER17_RS21380 at 4793.263 kb on + strand, within HER17_RS21385 at 4793.263 kb on + strand, within HER17_RS21385 at 4793.263 kb on + strand, within HER17_RS21385 at 4793.264 kb on - strand, within HER17_RS21385 at 4793.315 kb on + strand, within HER17_RS21385 at 4793.316 kb on - strand, within HER17_RS21385 at 4793.378 kb on + strand at 4793.416 kb on + strand at 4793.419 kb on - strand at 4793.419 kb on - strand at 4793.419 kb on - strand at 4793.468 kb on + strand at 4793.468 kb on + strand at 4793.469 kb on - strand at 4793.472 kb on - strand at 4793.472 kb on - strand at 4793.517 kb on - strand at 4793.527 kb on - strand at 4793.549 kb on + strand at 4793.550 kb on - strand at 4793.557 kb on + strand at 4793.558 kb on - strand at 4793.558 kb on - strand at 4793.558 kb on - strand at 4793.559 kb on + strand at 4793.618 kb on - strand, within HER17_RS21390 at 4793.731 kb on + strand, within HER17_RS21390 at 4793.732 kb on - strand, within HER17_RS21390 at 4793.737 kb on + strand, within HER17_RS21390 at 4793.737 kb on + strand, within HER17_RS21390 at 4793.737 kb on + strand, within HER17_RS21390 at 4793.737 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.769 kb on + strand, within HER17_RS21390 at 4793.770 kb on - strand, within HER17_RS21390 at 4793.770 kb on - strand, within HER17_RS21390 at 4793.770 kb on - strand, within HER17_RS21390 at 4793.770 kb on - strand, within HER17_RS21390 at 4793.770 kb on - strand, within HER17_RS21390 at 4793.861 kb on + strand, within HER17_RS21390 at 4793.862 kb on - strand, within HER17_RS21390 at 4793.878 kb on + strand, within HER17_RS21390 at 4793.878 kb on + strand, within HER17_RS21390 at 4793.879 kb on - strand, within HER17_RS21390 at 4793.879 kb on - strand, within HER17_RS21390 at 4793.879 kb on - strand, within HER17_RS21390 at 4793.908 kb on + strand, within HER17_RS21390 at 4793.908 kb on + strand, within HER17_RS21390 at 4793.909 kb on - strand, within HER17_RS21390 at 4794.008 kb on + strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.009 kb on - strand, within HER17_RS21390 at 4794.044 kb on + strand, within HER17_RS21390 at 4794.044 kb on + strand, within HER17_RS21390 at 4794.044 kb on + strand, within HER17_RS21390 at 4794.045 kb on - strand, within HER17_RS21390 at 4794.181 kb on - strand at 4794.181 kb on - strand at 4794.261 kb on + strand at 4794.261 kb on + strand at 4794.261 kb on + strand at 4794.262 kb on - strand at 4794.267 kb on + strand at 4794.268 kb on - strand at 4794.344 kb on + strand at 4794.344 kb on + strand at 4794.344 kb on + strand at 4794.344 kb on + strand at 4794.345 kb on - strand at 4794.345 kb on - strand at 4794.345 kb on - strand at 4794.345 kb on - strand at 4794.345 kb on - strand at 4794.366 kb on + strand at 4794.381 kb on + strand at 4794.382 kb on - strand at 4794.402 kb on + strand at 4794.402 kb on + strand at 4794.403 kb on - strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.406 kb on + strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.407 kb on - strand at 4794.442 kb on - strand, within HER17_RS21395
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 4,790,446 + -0.5 4,791,068 + +0.5 4,791,068 + +0.7 4,791,068 + +0.2 4,791,094 + +0.5 4,791,126 + +0.5 4,791,126 + +1.1 4,791,134 + +0.4 4,791,145 + -1.1 4,791,145 + -0.3 4,791,145 + +1.2 4,791,145 + +0.9 4,791,270 + HER17_RS21380 0.49 +0.2 4,791,270 + HER17_RS21380 0.49 -0.5 4,791,270 + HER17_RS21380 0.49 +0.7 4,791,270 + HER17_RS21380 0.49 +0.8 4,791,270 + HER17_RS21380 0.49 +1.9 4,791,270 + HER17_RS21380 0.49 +0.1 4,793,263 + HER17_RS21385 0.87 +0.2 4,793,263 + HER17_RS21385 0.87 +0.3 4,793,263 + HER17_RS21385 0.87 -0.3 4,793,264 - HER17_RS21385 0.87 -4.3 4,793,315 + HER17_RS21385 0.90 -0.5 4,793,316 - HER17_RS21385 0.90 -1.5 4,793,378 + -0.7 4,793,416 + -0.9 4,793,419 - -0.3 4,793,419 - -1.7 4,793,419 - -0.4 4,793,468 + -1.5 4,793,468 + -2.6 4,793,469 - -2.3 4,793,472 - -1.3 4,793,472 - -0.5 4,793,517 - +0.1 4,793,527 - -1.4 4,793,549 + +0.7 4,793,550 - +0.1 4,793,557 + -0.8 4,793,558 - -0.3 4,793,558 - -2.9 4,793,558 - -0.8 4,793,559 + -0.7 4,793,618 - HER17_RS21390 0.12 -2.3 4,793,731 + HER17_RS21390 0.28 +0.5 4,793,732 - HER17_RS21390 0.29 -1.7 4,793,737 + HER17_RS21390 0.29 -0.4 4,793,737 + HER17_RS21390 0.29 +0.4 4,793,737 + HER17_RS21390 0.29 -1.3 4,793,737 + HER17_RS21390 0.29 +1.1 4,793,769 + HER17_RS21390 0.34 +0.1 4,793,769 + HER17_RS21390 0.34 -0.4 4,793,769 + HER17_RS21390 0.34 -0.2 4,793,769 + HER17_RS21390 0.34 +0.6 4,793,769 + HER17_RS21390 0.34 -0.1 4,793,769 + HER17_RS21390 0.34 +0.2 4,793,769 + HER17_RS21390 0.34 +1.0 4,793,769 + HER17_RS21390 0.34 +0.7 4,793,770 - HER17_RS21390 0.34 -0.9 4,793,770 - HER17_RS21390 0.34 -2.0 4,793,770 - HER17_RS21390 0.34 +1.2 4,793,770 - HER17_RS21390 0.34 -0.6 4,793,770 - HER17_RS21390 0.34 -1.1 4,793,861 + HER17_RS21390 0.47 +0.4 4,793,862 - HER17_RS21390 0.47 +0.6 4,793,878 + HER17_RS21390 0.50 -0.1 4,793,878 + HER17_RS21390 0.50 +0.1 4,793,879 - HER17_RS21390 0.50 +1.5 4,793,879 - HER17_RS21390 0.50 +0.1 4,793,879 - HER17_RS21390 0.50 -1.9 4,793,908 + HER17_RS21390 0.54 +0.2 4,793,908 + HER17_RS21390 0.54 +0.2 4,793,909 - HER17_RS21390 0.54 -0.4 4,794,008 + HER17_RS21390 0.68 +1.4 4,794,009 - HER17_RS21390 0.69 -0.4 4,794,009 - HER17_RS21390 0.69 -1.1 4,794,009 - HER17_RS21390 0.69 -1.6 4,794,009 - HER17_RS21390 0.69 -1.8 4,794,009 - HER17_RS21390 0.69 +0.2 4,794,009 - HER17_RS21390 0.69 -0.7 4,794,009 - HER17_RS21390 0.69 -0.9 4,794,044 + HER17_RS21390 0.74 +1.1 4,794,044 + HER17_RS21390 0.74 -0.7 4,794,044 + HER17_RS21390 0.74 +0.7 4,794,045 - HER17_RS21390 0.74 +0.1 4,794,181 - +0.9 4,794,181 - +0.6 4,794,261 + -1.6 4,794,261 + -0.3 4,794,261 + -1.4 4,794,262 - -0.4 4,794,267 + -0.0 4,794,268 - -0.7 4,794,344 + -1.0 4,794,344 + -1.1 4,794,344 + -0.5 4,794,344 + -1.3 4,794,345 - -0.5 4,794,345 - -1.1 4,794,345 - -0.8 4,794,345 - -0.4 4,794,345 - -0.8 4,794,366 + -1.2 4,794,381 + -0.8 4,794,382 - -1.0 4,794,402 + -1.4 4,794,402 + -0.0 4,794,403 - -0.9 4,794,406 + -0.6 4,794,406 + -0.5 4,794,406 + -0.7 4,794,406 + -1.0 4,794,406 + -1.6 4,794,406 + -0.5 4,794,406 + -0.1 4,794,406 + +0.7 4,794,407 - -1.5 4,794,407 - +0.4 4,794,407 - -1.9 4,794,407 - -0.7 4,794,407 - -0.6 4,794,407 - -0.3 4,794,407 - -1.4 4,794,407 - -1.2 4,794,407 - -2.9 4,794,407 - -0.2 4,794,407 - -1.3 4,794,407 - -1.8 4,794,407 - -0.5 4,794,407 - -2.5 4,794,407 - -0.3 4,794,407 - -1.6 4,794,442 - HER17_RS21395 0.10 -0.2
Or see this region's nucleotide sequence