Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21060

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,709,932	+		HER17_RS21055	0.58	-4.0
4,709,932	+		HER17_RS21055	0.58	-2.0
4,709,932	+		HER17_RS21055	0.58	-3.4
4,709,933	-		HER17_RS21055	0.58	-0.9
4,709,933	-		HER17_RS21055	0.58	-1.5
4,709,956	+		HER17_RS21055	0.59	-4.2
4,709,978	+		HER17_RS21055	0.61	-5.0
4,709,978	+		HER17_RS21055	0.61	-4.0
4,709,979	-		HER17_RS21055	0.61	-3.8
4,709,979	-		HER17_RS21055	0.61	-1.9
4,710,044	-		HER17_RS21055	0.66	-3.8
4,710,082	+		HER17_RS21055	0.69	-2.1
4,710,083	-		HER17_RS21055	0.69	-4.9
4,710,107	+		HER17_RS21055	0.71	-1.8
4,710,108	-		HER17_RS21055	0.71	-5.1
4,710,109	+		HER17_RS21055	0.71	-3.1
4,710,109	+		HER17_RS21055	0.71	-4.0
4,710,109	+		HER17_RS21055	0.71	-3.6
4,710,109	+		HER17_RS21055	0.71	-2.4
4,710,109	+		HER17_RS21055	0.71	-4.2
4,710,109	+		HER17_RS21055	0.71	-2.4
4,710,110	-		HER17_RS21055	0.71	-4.6
4,710,110	-		HER17_RS21055	0.71	-4.6
4,710,110	-		HER17_RS21055	0.71	-3.3
4,710,110	-		HER17_RS21055	0.71	-3.1
4,710,110	-		HER17_RS21055	0.71	-3.8
4,710,110	-		HER17_RS21055	0.71	-4.0
4,710,208	+		HER17_RS21055	0.78	-4.8
4,710,209	-		HER17_RS21055	0.78	-4.6
4,710,347	-		HER17_RS21055	0.88	-4.8
4,710,347	-		HER17_RS21055	0.88	-2.4
4,710,382	+				-3.9
4,710,382	+				-4.2
4,710,382	+				-1.8
4,710,382	+				-2.6
4,710,383	-				+0.4
4,710,383	-				-3.8
4,710,458	+				-3.4
4,710,464	+				-3.0
4,710,504	-				-2.4
4,710,504	-				-3.9
4,710,509	+				-4.9
4,710,509	+				-3.7
4,710,510	-				-3.8
4,710,535	+				-3.6
4,710,535	+				-3.6
4,710,536	-				-3.1
4,710,536	-				-2.3
4,710,537	+				-5.1
4,710,537	+				-4.7
4,710,537	+				-4.1
4,710,537	+				-2.9
4,710,537	+				-4.5
4,710,537	+				-4.0
4,710,538	-				-2.8
4,710,538	-				-1.9
4,710,538	-				-3.1
4,710,558	+				-3.9
4,710,559	+				-2.9
4,710,559	+				-2.4
4,710,560	-				-3.0
4,710,560	-				-2.3
4,710,560	-				-2.1
4,710,560	-				-1.3
4,710,560	-				-2.3
4,710,564	+				-3.3
4,710,565	-				-4.1
4,710,565	-				-1.6
4,710,721	+				+0.1
4,710,722	-				-0.5
4,710,722	-				-0.2
4,710,763	+				+0.2
4,710,770	+				+0.1
4,710,770	+				+0.5
4,710,770	+				+0.1
4,710,771	-				-1.4
4,710,771	-				-0.3
4,710,771	-				-0.4
4,710,779	-				+0.6
4,710,812	+				-0.1
4,710,900	+				+0.5
4,710,901	-				-0.3
4,710,901	-				+0.8
4,710,915	+				-0.4
4,710,915	+				-1.4
4,710,915	+				-0.2
4,710,915	+				-0.7
4,710,915	+				-0.3
4,710,915	+				+0.7
4,710,915	+				+0.1
4,710,915	+				+0.4
4,710,915	+				+0.1
4,710,915	+				+0.4
4,710,915	+				+0.7
4,710,915	+				+0.7
4,710,915	+				-0.1
4,710,915	+				+0.3
4,710,915	+				+1.3
4,710,915	+				-0.5
4,710,915	+				-0.8
4,710,915	+				+0.7
4,710,915	+				-0.8
4,710,915	+				-0.9
4,710,915	+				-0.4
4,710,916	-				+0.2
4,710,916	-				+0.1
4,710,916	-				+0.0
4,710,916	-				+0.2
4,710,916	-				+0.4
4,710,916	-				-0.5
4,710,916	-				+0.4
4,710,916	-				-0.3
4,710,916	-				-0.3
4,710,916	-				+1.2
4,710,916	-				-0.1
4,710,916	-				+0.2
4,710,916	-				+0.0
4,710,916	-				-1.2
4,710,916	-				-0.4
4,710,916	-				+0.1
4,710,916	-				-1.8
4,710,916	-				-1.8
4,710,972	+				+0.2
4,710,996	+		HER17_RS21060	0.14	+0.1
4,710,997	-		HER17_RS21060	0.14	-1.9
4,711,004	+		HER17_RS21060	0.15	+1.1
4,711,004	+		HER17_RS21060	0.15	-0.5
4,711,005	-		HER17_RS21060	0.15	+0.2
4,711,005	-		HER17_RS21060	0.15	+0.8
4,711,005	-		HER17_RS21060	0.15	+0.3
4,711,005	-		HER17_RS21060	0.15	-0.3
4,711,027	+		HER17_RS21060	0.19	+0.4
4,711,027	+		HER17_RS21060	0.19	-0.6
4,711,027	+		HER17_RS21060	0.19	+0.3
4,711,027	+		HER17_RS21060	0.19	+0.1
4,711,028	-		HER17_RS21060	0.19	+0.3
4,711,028	-		HER17_RS21060	0.19	+0.1
4,711,028	-		HER17_RS21060	0.19	-0.1
4,711,028	-		HER17_RS21060	0.19	-0.3
4,711,051	+		HER17_RS21060	0.23	+0.6
4,711,051	+		HER17_RS21060	0.23	+0.5
4,711,051	+		HER17_RS21060	0.23	+0.4
4,711,051	+		HER17_RS21060	0.23	-0.2
4,711,051	+		HER17_RS21060	0.23	+0.0
4,711,056	+		HER17_RS21060	0.24	+0.1
4,711,056	+		HER17_RS21060	0.24	+0.7
4,711,056	+		HER17_RS21060	0.24	+0.5
4,711,059	+		HER17_RS21060	0.25	+0.2
4,711,059	+		HER17_RS21060	0.25	+0.4
4,711,059	+		HER17_RS21060	0.25	-0.1
4,711,059	+		HER17_RS21060	0.25	-0.4
4,711,091	+		HER17_RS21060	0.30	+0.0
4,711,255	-		HER17_RS21060	0.59	+0.2
4,711,280	-		HER17_RS21060	0.63	+0.5
4,711,280	-		HER17_RS21060	0.63	-0.1
4,711,299	-		HER17_RS21060	0.66	-0.2
4,711,324	+		HER17_RS21060	0.71	-0.2
4,711,324	+		HER17_RS21060	0.71	+0.4
4,711,324	+		HER17_RS21060	0.71	+1.3
4,711,324	+		HER17_RS21060	0.71	-2.8
4,711,324	+		HER17_RS21060	0.71	+0.3
4,711,324	+		HER17_RS21060	0.71	+1.2
4,711,324	+		HER17_RS21060	0.71	-0.5
4,711,325	-		HER17_RS21060	0.71	-1.1
4,711,325	-		HER17_RS21060	0.71	-0.2
4,711,325	-		HER17_RS21060	0.71	-0.5
4,711,402	-		HER17_RS21060	0.84	-0.5
4,711,402	-		HER17_RS21060	0.84	-0.4
4,711,465	+				+0.0
4,711,466	-				-0.9
4,711,506	-				-0.6
4,711,506	-				-0.4
4,711,554	-				+0.1
4,711,559	+				+0.3
4,711,562	+				+0.3
4,711,608	-				+1.8
4,711,608	-				+0.1
4,711,608	-				+0.7
4,711,618	-				+0.6
4,711,827	+		HER17_RS21065	0.23	+0.3
4,711,958	-		HER17_RS21065	0.34	-0.0
4,711,958	-		HER17_RS21065	0.34	-0.7
4,712,080	-		HER17_RS21065	0.44	+0.3
4,712,231	+		HER17_RS21065	0.57	-0.6
4,712,232	-		HER17_RS21065	0.57	-1.5
4,712,242	-		HER17_RS21065	0.58	-0.2
4,712,267	+		HER17_RS21065	0.60	-0.1
4,712,267	+		HER17_RS21065	0.60	+0.1
4,712,268	-		HER17_RS21065	0.60	-0.1
4,712,282	+		HER17_RS21065	0.61	-0.5
4,712,282	+		HER17_RS21065	0.61	-0.9
4,712,363	+		HER17_RS21065	0.68	+1.2
4,712,364	-		HER17_RS21065	0.68	+1.1
4,712,403	+		HER17_RS21065	0.72	+0.1
4,712,403	+		HER17_RS21065	0.72	+0.2
4,712,403	+		HER17_RS21065	0.72	+0.7
4,712,426	+		HER17_RS21065	0.74	+1.1
4,712,426	+		HER17_RS21065	0.74	+0.1
4,712,426	+		HER17_RS21065	0.74	-0.4
4,712,426	+		HER17_RS21065	0.74	+0.0
4,712,426	+		HER17_RS21065	0.74	+0.7
4,712,426	+		HER17_RS21065	0.74	+1.5
4,712,426	+		HER17_RS21065	0.74	+1.6
4,712,426	+		HER17_RS21065	0.74	+0.8
4,712,426	+		HER17_RS21065	0.74	+0.6
4,712,427	-		HER17_RS21065	0.74	+0.1
4,712,427	-		HER17_RS21065	0.74	+0.8
4,712,427	-		HER17_RS21065	0.74	-0.8
4,712,427	-		HER17_RS21065	0.74	-0.8
4,712,427	-		HER17_RS21065	0.74	-0.1
4,712,427	-		HER17_RS21065	0.74	+0.1
4,712,431	-		HER17_RS21065	0.74	+0.2
4,712,431	-		HER17_RS21065	0.74	-0.3
4,712,443	-		HER17_RS21065	0.75	-0.0
4,712,443	-		HER17_RS21065	0.75	-0.2
4,712,444	+		HER17_RS21065	0.75	-0.1
4,712,444	+		HER17_RS21065	0.75	+0.5
4,712,445	-		HER17_RS21065	0.75	+0.0
4,712,445	-		HER17_RS21065	0.75	-0.1
4,712,445	-		HER17_RS21065	0.75	-0.3
4,712,445	-		HER17_RS21065	0.75	-0.5
4,712,445	-		HER17_RS21065	0.75	+0.2
4,712,445	-		HER17_RS21065	0.75	-0.4
4,712,445	-		HER17_RS21065	0.75	+0.2
4,712,445	-		HER17_RS21065	0.75	+0.1
4,712,445	-		HER17_RS21065	0.75	-0.2
4,712,445	-		HER17_RS21065	0.75	-0.7
4,712,477	+		HER17_RS21065	0.78	-0.0