Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20380

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,566,499	-				+0.3
4,566,512	+				-2.0
4,566,520	+				+0.1
4,566,521	-				+0.6
4,566,550	+				+0.7
4,566,565	+				-0.1
4,566,566	-				+0.7
4,566,566	-				+1.0
4,566,569	+				-0.1
4,566,570	-				+0.5
4,566,576	+				+0.7
4,566,576	+				+0.5
4,566,577	-				+0.3
4,566,625	+				-0.0
4,566,643	+				+0.2
4,566,651	+				+0.2
4,566,651	+				-0.2
4,566,652	-				+0.8
4,566,652	-				+0.2
4,566,665	+				+0.5
4,566,689	-		HER17_RS20375	0.15	-1.0
4,566,689	-		HER17_RS20375	0.15	+0.7
4,566,689	-		HER17_RS20375	0.15	-0.3
4,566,699	-		HER17_RS20375	0.17	-0.1
4,566,699	-		HER17_RS20375	0.17	+0.2
4,566,717	+		HER17_RS20375	0.21	-0.2
4,566,717	+		HER17_RS20375	0.21	-0.9
4,566,718	-		HER17_RS20375	0.21	+0.5
4,566,718	-		HER17_RS20375	0.21	+0.4
4,566,720	+		HER17_RS20375	0.21	-0.4
4,566,720	+		HER17_RS20375	0.21	+0.5
4,566,720	+		HER17_RS20375	0.21	+0.4
4,566,720	+		HER17_RS20375	0.21	+0.3
4,566,720	+		HER17_RS20375	0.21	+0.4
4,566,720	+		HER17_RS20375	0.21	+1.0
4,566,720	+		HER17_RS20375	0.21	+0.1
4,566,721	-		HER17_RS20375	0.22	-0.1
4,566,721	-		HER17_RS20375	0.22	+1.0
4,566,721	-		HER17_RS20375	0.22	-0.3
4,566,721	-		HER17_RS20375	0.22	+0.6
4,566,721	-		HER17_RS20375	0.22	+1.5
4,566,721	-		HER17_RS20375	0.22	+1.0
4,566,810	+		HER17_RS20375	0.41	+1.1
4,566,810	+		HER17_RS20375	0.41	-0.3
4,566,811	-		HER17_RS20375	0.41	-0.2
4,566,811	-		HER17_RS20375	0.41	+0.1
4,566,838	-		HER17_RS20375	0.47	-0.1
4,566,880	+		HER17_RS20375	0.56	+0.0
4,566,880	+		HER17_RS20375	0.56	-0.5
4,566,880	+		HER17_RS20375	0.56	-0.0
4,566,881	-		HER17_RS20375	0.56	+0.4
4,566,881	-		HER17_RS20375	0.56	+1.0
4,566,881	-		HER17_RS20375	0.56	-0.2
4,566,881	-		HER17_RS20375	0.56	+0.5
4,566,881	-		HER17_RS20375	0.56	+0.3
4,566,881	-		HER17_RS20375	0.56	+0.3
4,566,945	+		HER17_RS20375	0.70	+0.7
4,566,945	+		HER17_RS20375	0.70	+1.2
4,566,945	+		HER17_RS20375	0.70	+0.7
4,566,946	-		HER17_RS20375	0.70	+0.2
4,566,946	-		HER17_RS20375	0.70	+0.9
4,566,980	+		HER17_RS20375	0.78	+0.0
4,566,980	+		HER17_RS20375	0.78	+0.3
4,566,980	+		HER17_RS20375	0.78	-1.8
4,566,980	+		HER17_RS20375	0.78	+0.8
4,566,980	+		HER17_RS20375	0.78	-0.8
4,566,980	+		HER17_RS20375	0.78	+0.3
4,566,980	+		HER17_RS20375	0.78	+0.2
4,566,980	+		HER17_RS20375	0.78	-0.0
4,566,981	-		HER17_RS20375	0.78	+0.4
4,567,071	+				+0.5
4,567,097	+				-0.1
4,567,123	-				+0.5
4,567,166	+				-2.0
4,567,166	+				-2.2
4,567,166	+				-2.8
4,567,166	+				-2.5
4,567,166	+				-4.0
4,567,167	-				-2.6
4,567,167	-				-1.4
4,567,167	-				-2.3
4,567,167	-				-2.3
4,567,167	-				-2.0
4,567,167	-				-1.0
4,567,173	+				-2.2
4,567,173	+				-2.9
4,567,174	-				-1.4
4,567,174	-				-2.5
4,567,182	+				-0.6
4,567,194	+				-3.6
4,567,207	+				-1.0
4,567,207	+				-1.7
4,567,208	-				-1.3
4,567,208	-				-1.8
4,567,261	-				-1.9
4,567,272	+				+0.4
4,567,273	-				-2.6
4,567,273	-				-2.0
4,567,297	-				-0.7
4,567,297	-				-0.4
4,567,329	+				-2.3
4,567,329	+				-2.4
4,567,330	-				-3.2
4,567,330	-				-1.0
4,567,330	-				-1.3
4,567,350	+				-1.6
4,567,350	+				-2.2
4,567,350	+				-2.0
4,567,350	+				-1.4
4,567,351	-				-1.8
4,567,351	-				+0.6
4,567,351	-				-1.5
4,567,380	-				-3.1
4,567,389	+				-2.6
4,567,389	+				-2.9
4,567,389	+				-0.7
4,567,389	+				-2.2
4,567,389	+				-1.0
4,567,390	-				-2.7
4,567,390	-				-2.0
4,567,414	+				-2.7
4,567,414	+				-3.2
4,567,414	+				-1.5
4,567,415	-				-1.8
4,567,415	-				-1.9
4,567,415	-				-1.6
4,567,415	-				-1.2
4,567,417	+				-3.1
4,567,417	+				-2.7
4,567,418	-				+0.4
4,567,418	-				-3.4
4,567,418	-				-1.8
4,567,418	-				-1.5
4,567,418	-				+1.4
4,567,452	+				-3.5
4,567,452	+				-2.9
4,567,452	+				-1.3
4,567,452	+				-1.7
4,567,453	-				-2.0
4,567,453	-				-3.2
4,567,453	-				-2.8
4,567,459	+				-2.4
4,567,460	-				-1.5
4,567,472	+				-3.0
4,567,472	+				-2.4
4,567,472	+				-1.2
4,567,472	+				-1.2
4,567,472	+				-2.3
4,567,473	-				-2.0
4,567,473	-				-1.2
4,567,473	-				-1.2
4,567,478	+				-2.9
4,567,478	+				-1.0
4,567,478	+				-2.2
4,567,479	-				-1.2
4,567,496	-				-2.2
4,567,522	+				-1.1
4,567,522	+				-2.4
4,567,523	-				-1.1
4,567,523	-				-3.5
4,567,523	-				-3.6
4,567,526	+				-3.4
4,567,527	-				-1.5
4,567,527	-				-1.9
4,567,527	-				-1.6
4,567,527	-				-2.9
4,567,577	+				-1.4
4,567,588	+				-2.9
4,567,589	-				-1.0
4,567,589	-				-2.3
4,567,624	-				-1.0
4,567,628	+				-1.2
4,567,629	-				-1.2
4,567,629	-				-0.1
4,567,676	+		HER17_RS20380	0.10	-0.5
4,567,687	+		HER17_RS20380	0.11	-2.1
4,567,688	-		HER17_RS20380	0.11	-1.3
4,567,700	+		HER17_RS20380	0.11	-2.4
4,567,743	+		HER17_RS20380	0.14	-2.8
4,567,748	+		HER17_RS20380	0.14	-2.7
4,567,748	+		HER17_RS20380	0.14	-2.1
4,567,749	-		HER17_RS20380	0.14	-3.0
4,567,749	-		HER17_RS20380	0.14	-1.4
4,567,749	-		HER17_RS20380	0.14	-2.6
4,567,875	-		HER17_RS20380	0.20	-2.8
4,567,997	+		HER17_RS20380	0.26	-1.5
4,568,034	-		HER17_RS20380	0.28	-2.4
4,568,063	-		HER17_RS20380	0.30	-2.7
4,568,063	-		HER17_RS20380	0.30	-1.6
4,568,163	-		HER17_RS20380	0.35	-2.3
4,568,346	+		HER17_RS20380	0.44	-2.0
4,568,348	+		HER17_RS20380	0.44	-1.7
4,568,348	+		HER17_RS20380	0.44	-2.1
4,568,349	-		HER17_RS20380	0.44	-1.7
4,568,413	-		HER17_RS20380	0.47	-1.2
4,568,542	-		HER17_RS20380	0.54	-0.7
4,568,545	+		HER17_RS20380	0.54	-1.0
4,568,545	+		HER17_RS20380	0.54	-2.2
4,568,679	+		HER17_RS20380	0.61	-2.3
4,568,680	-		HER17_RS20380	0.61	-1.4
4,568,680	-		HER17_RS20380	0.61	-2.3
4,568,711	-		HER17_RS20380	0.63	-3.0
4,568,765	+		HER17_RS20380	0.65	-1.2
4,568,765	+		HER17_RS20380	0.65	-2.0
4,568,765	+		HER17_RS20380	0.65	-3.2
4,568,765	+		HER17_RS20380	0.65	-3.0
4,568,765	+		HER17_RS20380	0.65	-2.3
4,568,765	+		HER17_RS20380	0.65	-2.9
4,568,765	+		HER17_RS20380	0.65	-2.4
4,568,766	-		HER17_RS20380	0.65	-1.7
4,568,766	-		HER17_RS20380	0.65	-4.0
4,568,766	-		HER17_RS20380	0.65	-1.4
4,568,766	-		HER17_RS20380	0.65	-1.6
4,568,766	-		HER17_RS20380	0.65	-3.2
4,568,766	-		HER17_RS20380	0.65	-0.9
4,568,771	-		HER17_RS20380	0.66	-1.7
4,568,771	-		HER17_RS20380	0.66	-0.2
4,568,771	-		HER17_RS20380	0.66	-1.9
4,568,799	+		HER17_RS20380	0.67	-2.5
4,568,806	+		HER17_RS20380	0.67	-1.7
4,568,807	-		HER17_RS20380	0.67	-2.4
4,568,807	-		HER17_RS20380	0.67	-1.2
4,568,807	-		HER17_RS20380	0.67	-1.6
4,568,807	-		HER17_RS20380	0.67	-1.7
4,568,807	-		HER17_RS20380	0.67	-2.3
4,568,901	+		HER17_RS20380	0.72	-2.7
4,568,901	+		HER17_RS20380	0.72	-1.1
4,568,901	+		HER17_RS20380	0.72	-2.4
4,568,901	+		HER17_RS20380	0.72	-1.0
4,568,902	-		HER17_RS20380	0.72	-2.2
4,568,902	-		HER17_RS20380	0.72	-1.8
4,568,902	-		HER17_RS20380	0.72	-2.5
4,568,902	-		HER17_RS20380	0.72	-2.9
4,568,902	-		HER17_RS20380	0.72	-1.8
4,568,902	-		HER17_RS20380	0.72	-1.7
4,568,940	+		HER17_RS20380	0.74	-3.4
4,569,006	+		HER17_RS20380	0.77	-1.5
4,569,006	+		HER17_RS20380	0.77	-1.6
4,569,007	-		HER17_RS20380	0.77	-1.9
4,569,007	-		HER17_RS20380	0.77	-2.6
4,569,068	+		HER17_RS20380	0.81	-2.1
4,569,217	-		HER17_RS20380	0.88	-1.8
4,569,313	+				-1.7
4,569,313	+				-2.5
4,569,313	+				-2.1
4,569,412	-				-1.4
4,569,497	+				-2.1
4,569,511	+				-2.4
4,569,673	-		HER17_RS20385	0.35	-3.8
4,569,678	+		HER17_RS20385	0.36	-3.0
4,569,699	+		HER17_RS20385	0.39	-0.8
4,569,699	+		HER17_RS20385	0.39	-1.2
4,569,700	-		HER17_RS20385	0.39	+0.5
4,569,700	-		HER17_RS20385	0.39	-0.9
4,569,700	-		HER17_RS20385	0.39	-1.6
4,569,700	-		HER17_RS20385	0.39	-2.6
4,569,700	-		HER17_RS20385	0.39	-1.7
4,569,765	+		HER17_RS20385	0.49	-2.3
4,569,824	+		HER17_RS20385	0.58	-1.4
4,569,824	+		HER17_RS20385	0.58	-2.2
4,569,825	-		HER17_RS20385	0.59	-2.4
4,569,825	-		HER17_RS20385	0.59	-0.8
4,569,841	+		HER17_RS20385	0.61	-2.9
4,569,842	-		HER17_RS20385	0.61	-1.5
4,569,865	+		HER17_RS20385	0.65	-2.8
4,569,866	-		HER17_RS20385	0.65	-3.0
4,569,969	+		HER17_RS20385	0.81	-2.4
4,569,969	+		HER17_RS20385	0.81	-1.4
4,569,969	+		HER17_RS20385	0.81	-1.0
4,569,970	-		HER17_RS20385	0.81	-1.7
4,570,091	+				-2.7
4,570,096	+				-3.5
4,570,162	+				-2.2
4,570,162	+				-2.7
4,570,162	+				-2.4
4,570,162	+				-4.0
4,570,163	-				-1.7
4,570,406	-		HER17_RS20390	0.39	-0.8