Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20030

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,496,527	+		HER17_RS20025	0.39	-0.4
4,496,528	-		HER17_RS20025	0.39	-0.6
4,496,528	-		HER17_RS20025	0.39	-1.5
4,496,528	-		HER17_RS20025	0.39	-0.5
4,496,528	-		HER17_RS20025	0.39	-0.3
4,496,624	+		HER17_RS20025	0.51	+0.3
4,496,624	+		HER17_RS20025	0.51	+0.8
4,496,625	-		HER17_RS20025	0.51	+0.2
4,496,659	+		HER17_RS20025	0.55	-2.3
4,496,686	+		HER17_RS20025	0.58	+1.6
4,496,687	-		HER17_RS20025	0.58	-0.4
4,496,687	-		HER17_RS20025	0.58	-0.2
4,496,713	+		HER17_RS20025	0.62	-0.0
4,496,713	+		HER17_RS20025	0.62	-0.2
4,496,785	-		HER17_RS20025	0.70	-1.1
4,496,983	+				+0.6
4,496,984	-				-0.3
4,497,007	+				-0.3
4,497,007	+				+0.1
4,497,007	+				-0.1
4,497,008	-				-0.4
4,497,008	-				-0.6
4,497,008	-				-1.3
4,497,008	-				+0.4
4,497,026	+				+1.0
4,497,027	-				-1.4
4,497,027	-				-1.5
4,497,049	+				-0.5
4,497,049	+				+0.8
4,497,049	+				-1.2
4,497,050	-				+0.9
4,497,057	+				+0.6
4,497,058	-				-0.0
4,497,058	-				+0.2
4,497,058	-				+0.4
4,497,126	+				+0.3
4,497,169	+				+0.0
4,497,174	-				-0.1
4,497,216	-				+0.2
4,497,270	+				-0.1
4,497,271	-				-0.2
4,497,271	-				+0.3
4,497,292	+				-1.2
4,497,293	-				-0.2
4,497,294	+				+0.7
4,497,294	+				-1.2
4,497,295	-				-0.0
4,497,295	-				+0.5
4,497,295	-				+0.3
4,497,295	-				-0.0
4,497,295	-				+0.6
4,497,295	-				+0.2
4,497,295	-				+0.7
4,497,295	-				+0.4
4,497,299	+				-0.8
4,497,303	+				-2.0
4,497,350	+				-0.4
4,497,350	+				+0.2
4,497,350	+				+0.6
4,497,350	+				-1.1
4,497,351	-				-0.4
4,497,359	-				+0.6
4,497,359	-				+0.5
4,497,359	-				+0.6
4,497,359	-				+0.7
4,497,379	+				-2.2
4,497,382	-				-0.7
4,497,382	-				+0.1
4,497,406	+				-0.7
4,497,406	+				+1.0
4,497,407	-				+0.4
4,497,415	+				-1.0
4,497,415	+				-0.5
4,497,415	+				-0.2
4,497,415	+				+0.1
4,497,416	-				-0.0
4,497,416	-				+0.7
4,497,417	+				-0.4
4,497,417	+				+0.0
4,497,417	+				+0.3
4,497,417	+				+0.5
4,497,417	+				-2.0
4,497,417	+				-0.4
4,497,417	+				-0.6
4,497,417	+				+0.0
4,497,417	+				-0.5
4,497,417	+				-0.2
4,497,417	+				-0.8
4,497,418	-				+0.8
4,497,418	-				+0.2
4,497,418	-				+0.6
4,497,418	-				+0.9
4,497,418	-				+0.4
4,497,418	-				+0.7
4,497,418	-				+0.4
4,497,418	-				+1.0
4,497,418	-				-0.3
4,497,418	-				-0.1
4,497,418	-				+0.4
4,497,418	-				-0.0
4,497,419	+				+0.8
4,497,419	+				+0.2
4,497,419	+				+0.0
4,497,419	+				-1.0
4,497,420	-				+0.5
4,497,420	-				+0.1
4,497,420	-				+0.4
4,497,420	-				-0.0
4,497,420	-				-0.3
4,497,424	+				+1.5
4,497,424	+				-0.4
4,497,428	-				+0.2
4,497,428	-				-0.0
4,497,456	+				+1.3
4,497,456	+				+0.3
4,497,456	+				+0.6
4,497,457	-				-1.3
4,497,457	-				-0.7
4,497,457	-				-0.4
4,497,457	-				-0.1
4,497,480	+				-0.0
4,497,488	+				-2.3
4,497,509	+				-0.4
4,497,510	-				-0.1
4,497,543	+		HER17_RS20030	0.11	-0.4
4,497,670	+		HER17_RS20030	0.24	+0.2
4,497,680	-		HER17_RS20030	0.25	-0.2
4,497,727	-		HER17_RS20030	0.30	-1.2
4,497,777	+		HER17_RS20030	0.35	-0.6
4,497,777	+		HER17_RS20030	0.35	-0.1
4,497,777	+		HER17_RS20030	0.35	+0.1
4,497,777	+		HER17_RS20030	0.35	-1.1
4,497,778	-		HER17_RS20030	0.35	-0.1
4,497,778	-		HER17_RS20030	0.35	+0.0
4,497,778	-		HER17_RS20030	0.35	-1.0
4,497,793	-		HER17_RS20030	0.37	+0.3
4,497,802	+		HER17_RS20030	0.37	+0.2
4,497,802	+		HER17_RS20030	0.37	-0.3
4,497,802	+		HER17_RS20030	0.37	-0.1
4,497,802	+		HER17_RS20030	0.37	+1.6
4,497,802	+		HER17_RS20030	0.37	-0.0
4,497,802	+		HER17_RS20030	0.37	-1.2
4,497,803	-		HER17_RS20030	0.38	+2.0
4,497,803	-		HER17_RS20030	0.38	+0.9
4,497,803	-		HER17_RS20030	0.38	-0.6
4,497,803	-		HER17_RS20030	0.38	+0.1
4,497,803	-		HER17_RS20030	0.38	+0.3
4,497,803	-		HER17_RS20030	0.38	+0.1
4,497,806	+		HER17_RS20030	0.38	+0.1
4,497,806	+		HER17_RS20030	0.38	+0.1
4,497,806	+		HER17_RS20030	0.38	+0.3
4,497,807	-		HER17_RS20030	0.38	+0.3
4,497,807	-		HER17_RS20030	0.38	-0.6
4,497,807	-		HER17_RS20030	0.38	+0.2
4,497,807	-		HER17_RS20030	0.38	+0.8
4,497,807	-		HER17_RS20030	0.38	+1.0
4,497,828	+		HER17_RS20030	0.40	+0.2
4,497,828	+		HER17_RS20030	0.40	+0.2
4,497,828	+		HER17_RS20030	0.40	+0.0
4,497,828	+		HER17_RS20030	0.40	+1.2
4,497,829	-		HER17_RS20030	0.40	+0.2
4,497,829	-		HER17_RS20030	0.40	+0.1
4,497,867	+		HER17_RS20030	0.44	-0.3
4,497,867	+		HER17_RS20030	0.44	-0.4
4,497,868	-		HER17_RS20030	0.44	+1.0
4,497,868	-		HER17_RS20030	0.44	+0.7
4,497,868	-		HER17_RS20030	0.44	+0.5
4,497,868	-		HER17_RS20030	0.44	+0.1
4,497,928	-		HER17_RS20030	0.51	-0.4
4,497,952	+		HER17_RS20030	0.53	-1.0
4,497,994	+		HER17_RS20030	0.57	+0.8
4,497,995	-		HER17_RS20030	0.57	-0.1
4,498,015	+		HER17_RS20030	0.60	-0.7
4,498,016	-		HER17_RS20030	0.60	+1.0
4,498,050	-		HER17_RS20030	0.63	+0.3
4,498,086	+		HER17_RS20030	0.67	-0.0
4,498,087	-		HER17_RS20030	0.67	+0.2
4,498,156	+		HER17_RS20030	0.74	+0.1
4,498,156	+		HER17_RS20030	0.74	-0.1
4,498,156	+		HER17_RS20030	0.74	-0.3
4,498,157	-		HER17_RS20030	0.74	+0.7
4,498,216	-		HER17_RS20030	0.80	-0.0
4,498,330	+				+0.1
4,498,330	+				+0.2
4,498,333	-				+0.1
4,498,353	+				+0.1
4,498,354	-				+0.1
4,498,354	-				+0.3
4,498,354	-				+0.7
4,498,354	-				+0.4
4,498,356	+				-0.0
4,498,357	-				+0.7
4,498,376	+				+0.9
4,498,444	+				-2.8