Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20010

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,493,452	-				+0.1
4,493,509	-				+0.5
4,493,509	-				+0.1
4,493,512	-				+0.5
4,493,512	-				+0.6
4,493,512	-				-0.4
4,493,512	-				+0.6
4,493,516	-				-0.4
4,493,559	-		HER17_RS20000	0.18	-0.5
4,493,559	-		HER17_RS20000	0.18	-0.4
4,493,559	-		HER17_RS20000	0.18	-0.3
4,493,559	-		HER17_RS20000	0.18	-1.5
4,493,561	-		HER17_RS20000	0.18	-0.7
4,493,561	-		HER17_RS20000	0.18	-0.8
4,493,561	-		HER17_RS20000	0.18	-1.2
4,493,586	-		HER17_RS20000	0.28	-0.8
4,493,603	-		HER17_RS20000	0.35	+0.6
4,493,783	-				-0.4
4,493,783	-				+0.0
4,493,783	-				+0.4
4,493,783	-				+1.0
4,493,783	-				-0.5
4,493,813	-				+0.5
4,493,813	-				-1.7
4,493,813	-				-1.2
4,493,818	-				+0.0
4,493,818	-				-1.3
4,493,818	-				+0.3
4,493,818	-				+0.8
4,493,825	+				-0.6
4,493,826	-				+1.0
4,493,826	-				-0.3
4,493,826	-				-0.3
4,493,839	-				-0.3
4,493,849	+				-0.6
4,493,849	+				-0.6
4,493,849	+				-0.8
4,493,849	+				+0.6
4,493,870	+				+1.0
4,493,981	+		HER17_RS20005	0.27	+0.6
4,493,982	-		HER17_RS20005	0.27	-0.1
4,494,010	-		HER17_RS20005	0.37	-0.5
4,494,054	-		HER17_RS20005	0.52	-0.1
4,494,073	+		HER17_RS20005	0.58	-0.0
4,494,073	+		HER17_RS20005	0.58	+0.9
4,494,074	-		HER17_RS20005	0.59	-0.5
4,494,326	+		HER17_RS20010	0.19	+0.7
4,494,326	+		HER17_RS20010	0.19	-0.2
4,494,327	-		HER17_RS20010	0.19	-0.5
4,494,383	+		HER17_RS20010	0.28	-0.2
4,494,383	+		HER17_RS20010	0.28	+0.4
4,494,384	-		HER17_RS20010	0.28	-0.4
4,494,384	-		HER17_RS20010	0.28	-0.6
4,494,461	+		HER17_RS20010	0.40	+0.8
4,494,493	+		HER17_RS20010	0.45	+0.1
4,494,494	-		HER17_RS20010	0.46	-0.0
4,494,494	-		HER17_RS20010	0.46	-0.4
4,494,506	+		HER17_RS20010	0.47	+0.3
4,494,508	+		HER17_RS20010	0.48	-0.1
4,494,508	+		HER17_RS20010	0.48	+0.7
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,508	+		HER17_RS20010	0.48	-0.0
4,494,508	+		HER17_RS20010	0.48	+0.4
4,494,508	+		HER17_RS20010	0.48	-0.2
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,509	-		HER17_RS20010	0.48	-0.7
4,494,509	-		HER17_RS20010	0.48	+0.8
4,494,544	+		HER17_RS20010	0.53	-0.2
4,494,545	-		HER17_RS20010	0.54	+0.2
4,494,565	+		HER17_RS20010	0.57	-0.0
4,494,566	-		HER17_RS20010	0.57	+0.3
4,494,598	+		HER17_RS20010	0.62	-0.6
4,494,598	+		HER17_RS20010	0.62	+0.5
4,494,599	-		HER17_RS20010	0.62	-0.2
4,494,599	-		HER17_RS20010	0.62	+0.1
4,494,599	-		HER17_RS20010	0.62	+1.2
4,494,602	-		HER17_RS20010	0.63	+0.6
4,494,629	-		HER17_RS20010	0.67	-0.0
4,494,643	+		HER17_RS20010	0.69	+0.1
4,494,643	+		HER17_RS20010	0.69	+0.3
4,494,644	-		HER17_RS20010	0.69	+0.3
4,494,644	-		HER17_RS20010	0.69	+0.1
4,494,644	-		HER17_RS20010	0.69	+0.2
4,494,663	+		HER17_RS20010	0.72	-0.6
4,494,663	+		HER17_RS20010	0.72	-0.0
4,494,663	+		HER17_RS20010	0.72	+0.3
4,494,664	-		HER17_RS20010	0.73	-0.7
4,494,664	-		HER17_RS20010	0.73	+0.1
4,494,664	-		HER17_RS20010	0.73	-0.2
4,494,664	-		HER17_RS20010	0.73	-0.4
4,494,664	-		HER17_RS20010	0.73	-1.0
4,494,664	-		HER17_RS20010	0.73	+0.7
4,494,668	+		HER17_RS20010	0.73	+0.8
4,494,668	+		HER17_RS20010	0.73	+1.6
4,494,669	-		HER17_RS20010	0.73	+0.0
4,494,669	-		HER17_RS20010	0.73	+0.4
4,494,671	+		HER17_RS20010	0.74	+0.1
4,494,672	-		HER17_RS20010	0.74	+0.2
4,494,672	-		HER17_RS20010	0.74	+1.0
4,494,679	+		HER17_RS20010	0.75	+0.5
4,494,680	-		HER17_RS20010	0.75	-1.2
4,494,831	-				-0.1
4,494,831	-				+0.2
4,494,843	-				+0.7
4,494,850	+				+0.5
4,494,850	+				+0.4
4,494,850	+				+0.5
4,494,850	+				+0.1
4,494,850	+				-0.4
4,494,850	+				-0.6
4,494,850	+				-0.3
4,494,850	+				-0.0
4,494,850	+				-0.6
4,494,850	+				+0.5
4,494,850	+				-0.0
4,494,851	-				-0.0
4,494,851	-				+0.4
4,494,851	-				+0.6
4,494,851	-				-0.4
4,494,853	+				-0.5
4,494,853	+				+1.1
4,494,938	+		HER17_RS20015	0.15	+0.6
4,494,938	+		HER17_RS20015	0.15	-1.0
4,494,939	-		HER17_RS20015	0.15	-0.2
4,494,962	+		HER17_RS20015	0.19	-0.2
4,494,962	+		HER17_RS20015	0.19	+0.1
4,494,962	+		HER17_RS20015	0.19	-0.2
4,494,962	+		HER17_RS20015	0.19	+0.5
4,494,962	+		HER17_RS20015	0.19	-0.4
4,494,962	+		HER17_RS20015	0.19	-0.3
4,494,962	+		HER17_RS20015	0.19	+0.1
4,494,962	+		HER17_RS20015	0.19	+0.2
4,494,962	+		HER17_RS20015	0.19	+0.1
4,494,962	+		HER17_RS20015	0.19	+0.4
4,494,962	+		HER17_RS20015	0.19	+0.9
4,494,963	-		HER17_RS20015	0.20	+0.6
4,494,963	-		HER17_RS20015	0.20	-0.4
4,494,963	-		HER17_RS20015	0.20	+1.3
4,494,963	-		HER17_RS20015	0.20	-0.4
4,494,963	-		HER17_RS20015	0.20	-1.0
4,494,963	-		HER17_RS20015	0.20	-0.6
4,494,963	-		HER17_RS20015	0.20	+0.3
4,494,963	-		HER17_RS20015	0.20	-0.3
4,494,963	-		HER17_RS20015	0.20	-2.2
4,494,963	-		HER17_RS20015	0.20	+1.1
4,494,964	+		HER17_RS20015	0.20	+1.1
4,494,964	+		HER17_RS20015	0.20	-0.2
4,494,964	+		HER17_RS20015	0.20	-0.3
4,494,965	-		HER17_RS20015	0.20	-0.2
4,494,966	+		HER17_RS20015	0.20	+0.1
4,494,966	+		HER17_RS20015	0.20	+0.3
4,494,967	-		HER17_RS20015	0.20	+0.2
4,494,967	-		HER17_RS20015	0.20	+0.5
4,495,074	-		HER17_RS20015	0.39	-0.1
4,495,112	+		HER17_RS20015	0.46	+0.2
4,495,134	-		HER17_RS20015	0.50	+0.5
4,495,134	-		HER17_RS20015	0.50	+0.9
4,495,142	+		HER17_RS20015	0.51	+0.1
4,495,142	+		HER17_RS20015	0.51	+0.5
4,495,143	-		HER17_RS20015	0.51	+0.9
4,495,143	-		HER17_RS20015	0.51	+0.2
4,495,150	+		HER17_RS20015	0.53	-0.4
4,495,150	+		HER17_RS20015	0.53	+0.3
4,495,163	+		HER17_RS20015	0.55	-0.5
4,495,186	+		HER17_RS20015	0.59	-0.9
4,495,187	-		HER17_RS20015	0.59	+1.2
4,495,300	+		HER17_RS20015	0.79	-0.3
4,495,300	+		HER17_RS20015	0.79	-0.5
4,495,379	+				-0.1
4,495,379	+				+0.8
4,495,380	-				+1.8
4,495,380	-				-0.1
4,495,582	+		HER17_RS20020	0.20	-0.0
4,495,582	+		HER17_RS20020	0.20	+0.3
4,495,582	+		HER17_RS20020	0.20	-0.8
4,495,587	+		HER17_RS20020	0.21	-0.3