Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17510

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,938,858	+				-0.5
3,938,859	-				+1.5
3,939,129	-		HER17_RS17495	0.46	-0.5
3,939,153	-		HER17_RS17495	0.58	-2.4
3,939,230	+				-0.4
3,939,230	+				+0.5
3,939,236	+				+1.0
3,939,270	+		HER17_RS17500	0.15	-1.7
3,939,270	+		HER17_RS17500	0.15	-0.2
3,939,271	-		HER17_RS17500	0.15	+0.4
3,939,380	+		HER17_RS17500	0.56	-0.3
3,939,381	-		HER17_RS17500	0.56	-0.6
3,939,381	-		HER17_RS17500	0.56	+0.3
3,939,381	-		HER17_RS17500	0.56	-0.2
3,939,383	+		HER17_RS17500	0.57	+0.6
3,939,383	+		HER17_RS17500	0.57	-0.1
3,939,383	+		HER17_RS17500	0.57	+1.0
3,939,383	+		HER17_RS17500	0.57	-0.4
3,939,384	-		HER17_RS17500	0.57	-0.0
3,939,384	-		HER17_RS17500	0.57	+1.2
3,939,384	-		HER17_RS17500	0.57	-0.4
3,939,401	+		HER17_RS17500	0.64	+0.1
3,939,401	+		HER17_RS17500	0.64	+0.2
3,939,402	-		HER17_RS17500	0.64	+1.1
3,939,402	-		HER17_RS17500	0.64	-0.5
3,939,402	-		HER17_RS17500	0.64	+0.6
3,939,436	+		HER17_RS17500	0.77	-0.0
3,939,437	-		HER17_RS17500	0.77	+0.4
3,939,446	+		HER17_RS17500	0.81	+0.4
3,939,506	-				-0.1
3,939,536	-		HER17_RS17505	0.12	-0.8
3,939,558	+		HER17_RS17505	0.19	+0.1
3,939,558	+		HER17_RS17505	0.19	+0.9
3,939,559	-		HER17_RS17505	0.19	-0.1
3,939,559	-		HER17_RS17505	0.19	+0.4
3,939,570	-		HER17_RS17505	0.22	-1.9
3,939,578	-		HER17_RS17505	0.25	-0.4
3,939,615	+		HER17_RS17505	0.35	+0.3
3,939,616	-		HER17_RS17505	0.36	+0.6
3,939,616	-		HER17_RS17505	0.36	+0.0
3,939,772	+		HER17_RS17505	0.81	+0.2
3,939,773	-		HER17_RS17505	0.82	+0.9
3,939,773	-		HER17_RS17505	0.82	+0.0
3,939,834	-				+0.8
3,940,287	-		HER17_RS17510	0.19	+0.1
3,940,320	+		HER17_RS17510	0.20	-0.2
3,940,320	+		HER17_RS17510	0.20	-0.9
3,940,320	+		HER17_RS17510	0.20	+1.7
3,940,336	+		HER17_RS17510	0.21	+0.4
3,940,337	-		HER17_RS17510	0.21	-0.5
3,940,337	-		HER17_RS17510	0.21	+0.1
3,940,337	-		HER17_RS17510	0.21	+0.8
3,940,352	+		HER17_RS17510	0.22	-0.2
3,940,492	-		HER17_RS17510	0.28	-0.1
3,940,705	+		HER17_RS17510	0.37	-0.2
3,940,728	+		HER17_RS17510	0.38	+0.5
3,940,994	-		HER17_RS17510	0.49	+0.1
3,940,994	-		HER17_RS17510	0.49	-1.4
3,940,994	-		HER17_RS17510	0.49	-0.1
3,941,032	+		HER17_RS17510	0.51	+0.2
3,941,032	+		HER17_RS17510	0.51	+0.1
3,941,032	+		HER17_RS17510	0.51	+0.0
3,941,032	+		HER17_RS17510	0.51	+0.5
3,941,032	+		HER17_RS17510	0.51	-0.3
3,941,033	-		HER17_RS17510	0.51	+0.0
3,941,033	-		HER17_RS17510	0.51	+1.0
3,941,033	-		HER17_RS17510	0.51	+0.2
3,941,033	-		HER17_RS17510	0.51	+0.2
3,941,037	-		HER17_RS17510	0.51	+0.1
3,941,155	+		HER17_RS17510	0.56	+0.9
3,941,155	+		HER17_RS17510	0.56	-0.0
3,941,155	+		HER17_RS17510	0.56	-0.5
3,941,155	+		HER17_RS17510	0.56	+0.5
3,941,178	+		HER17_RS17510	0.57	+0.2
3,941,179	-		HER17_RS17510	0.57	+0.2
3,941,280	-		HER17_RS17510	0.62	+0.0
3,941,316	+		HER17_RS17510	0.63	+1.2
3,941,316	+		HER17_RS17510	0.63	+0.1
3,941,435	+		HER17_RS17510	0.68	+1.2
3,941,435	+		HER17_RS17510	0.68	-0.7
3,941,436	-		HER17_RS17510	0.68	+0.3
3,941,436	-		HER17_RS17510	0.68	+1.1
3,941,436	-		HER17_RS17510	0.68	-0.2
3,941,485	+		HER17_RS17510	0.70	+0.2
3,941,486	-		HER17_RS17510	0.70	+1.1
3,941,486	-		HER17_RS17510	0.70	-1.5
3,941,571	+		HER17_RS17510	0.74	-0.6
3,941,605	+		HER17_RS17510	0.76	-0.2
3,941,622	-		HER17_RS17510	0.76	-0.2
3,941,758	+		HER17_RS17510	0.82	+0.1
3,941,920	-		HER17_RS17510	0.89	+0.4
3,941,920	-		HER17_RS17510	0.89	+0.7
3,941,920	-		HER17_RS17510	0.89	+0.7
3,941,920	-		HER17_RS17510	0.89	+0.7
3,941,920	-		HER17_RS17510	0.89	+0.8
3,941,920	-		HER17_RS17510	0.89	-0.9
3,941,920	-		HER17_RS17510	0.89	+0.5
3,941,921	+		HER17_RS17510	0.89	+0.3
3,941,922	-		HER17_RS17510	0.89	-0.1
3,941,957	+				+0.1
3,941,957	+				-0.2
3,941,958	-				-0.4
3,941,961	+				+0.1
3,941,961	+				-0.4
3,941,962	-				-1.7
3,941,968	-				+0.3
3,941,977	-				+0.6
3,942,035	+				+0.4
3,942,076	-				-1.2
3,942,103	+				-0.1
3,942,103	+				+0.8
3,942,103	+				+0.0
3,942,104	-				+0.3
3,942,104	-				+0.5
3,942,104	-				+0.3
3,942,163	+				-0.3
3,942,183	-				-0.5
3,942,229	+				+0.2
3,942,230	-				+0.1
3,942,232	+				-0.4
3,942,232	+				+1.3
3,942,232	+				+0.3
3,942,232	+				-0.4
3,942,232	+				-1.7
3,942,232	+				+0.7
3,942,232	+				-1.0
3,942,233	-				+0.3
3,942,233	-				-0.7
3,942,248	+				+0.3
3,942,249	-				+0.7
3,942,268	-				-0.3
3,942,279	+		HER17_RS17515	0.12	-2.2
3,942,347	+		HER17_RS17515	0.32	-1.0
3,942,390	+		HER17_RS17515	0.45	+0.1
3,942,390	+		HER17_RS17515	0.45	-0.3
3,942,403	+		HER17_RS17515	0.49	-0.4
3,942,447	-		HER17_RS17515	0.62	+0.5
3,942,457	+		HER17_RS17515	0.65	-0.3
3,942,483	+		HER17_RS17515	0.73	+0.7
3,942,484	-		HER17_RS17515	0.74	-0.4
3,942,495	+		HER17_RS17515	0.77	-0.3
3,942,495	+		HER17_RS17515	0.77	+0.7
3,942,530	-		HER17_RS17515	0.88	+0.9
3,942,530	-		HER17_RS17515	0.88	+0.0
3,942,578	-				-0.1
3,942,578	-				-1.5
3,942,617	+		HER17_RS17520	0.10	+0.3
3,942,617	+		HER17_RS17520	0.10	+2.0
3,942,619	+		HER17_RS17520	0.10	+0.3
3,942,619	+		HER17_RS17520	0.10	+0.9
3,942,656	+		HER17_RS17520	0.18	-0.8
3,942,656	+		HER17_RS17520	0.18	-0.6
3,942,656	+		HER17_RS17520	0.18	-0.6
3,942,656	+		HER17_RS17520	0.18	-0.4
3,942,656	+		HER17_RS17520	0.18	+0.2
3,942,657	-		HER17_RS17520	0.18	+0.7
3,942,657	-		HER17_RS17520	0.18	-0.0
3,942,657	-		HER17_RS17520	0.18	+0.1
3,942,660	+		HER17_RS17520	0.19	+0.2
3,942,660	+		HER17_RS17520	0.19	-0.2
3,942,661	-		HER17_RS17520	0.19	-0.1
3,942,661	-		HER17_RS17520	0.19	-0.9
3,942,663	+		HER17_RS17520	0.20	-0.0
3,942,664	-		HER17_RS17520	0.20	+0.8
3,942,674	-		HER17_RS17520	0.22	-0.0
3,942,674	-		HER17_RS17520	0.22	+0.9
3,942,678	+		HER17_RS17520	0.23	+0.2
3,942,679	-		HER17_RS17520	0.23	+0.9
3,942,691	+		HER17_RS17520	0.26	+0.2
3,942,691	+		HER17_RS17520	0.26	+0.5
3,942,692	-		HER17_RS17520	0.26	+1.4
3,942,723	-		HER17_RS17520	0.32	+0.0
3,942,723	-		HER17_RS17520	0.32	-0.2
3,942,792	+		HER17_RS17520	0.47	-0.2
3,942,793	-		HER17_RS17520	0.47	+0.2
3,942,793	-		HER17_RS17520	0.47	+1.4
3,942,879	+		HER17_RS17520	0.66	+0.0
3,942,879	+		HER17_RS17520	0.66	+0.4
3,942,879	+		HER17_RS17520	0.66	+0.2
3,942,880	-		HER17_RS17520	0.66	+0.2
3,942,883	+		HER17_RS17520	0.66	+0.2
3,942,883	+		HER17_RS17520	0.66	-0.0
3,942,884	-		HER17_RS17520	0.67	+0.1
3,942,917	+		HER17_RS17520	0.74	-0.1
3,942,917	+		HER17_RS17520	0.74	-0.2
3,942,918	-		HER17_RS17520	0.74	+0.0
3,942,966	-		HER17_RS17520	0.84	+0.9
3,942,966	-		HER17_RS17520	0.84	-2.3
3,942,970	-		HER17_RS17520	0.85	+0.3
3,943,006	+				-1.2
3,943,007	-				-0.2
3,943,009	+				+0.4
3,943,009	+				+0.9
3,943,010	-				+0.8
3,943,010	-				+0.0
3,943,010	-				-0.0
3,943,010	-				-0.5
3,943,017	-				-0.7
3,943,031	+				-0.6
3,943,035	-				-0.9
3,943,074	+				+1.1
3,943,095	+				-1.8
3,943,095	+				-0.1
3,943,102	+				-0.1
3,943,146	+				-1.0
3,943,147	-				-0.3
3,943,155	+				+0.7
3,943,169	+				+0.7
3,943,169	+				+0.7