Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15345

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,437,952	-		HER17_RS15340	0.72	+0.4
3,438,005	+		HER17_RS15340	0.74	-0.1
3,438,005	+		HER17_RS15340	0.74	+0.2
3,438,006	-		HER17_RS15340	0.74	+0.2
3,438,021	-		HER17_RS15340	0.74	-0.2
3,438,021	-		HER17_RS15340	0.74	-0.1
3,438,092	+		HER17_RS15340	0.76	-0.4
3,438,120	-		HER17_RS15340	0.77	+0.4
3,438,120	-		HER17_RS15340	0.77	+0.6
3,438,127	+		HER17_RS15340	0.78	-0.2
3,438,170	+		HER17_RS15340	0.79	+0.2
3,438,170	+		HER17_RS15340	0.79	-0.2
3,438,171	-		HER17_RS15340	0.79	+0.2
3,438,171	-		HER17_RS15340	0.79	+0.4
3,438,171	-		HER17_RS15340	0.79	+0.2
3,438,179	+		HER17_RS15340	0.79	+0.8
3,438,181	+		HER17_RS15340	0.79	-0.4
3,438,182	-		HER17_RS15340	0.79	+0.6
3,438,201	-		HER17_RS15340	0.80	+0.5
3,438,201	-		HER17_RS15340	0.80	-0.1
3,438,201	-		HER17_RS15340	0.80	-1.6
3,438,221	+		HER17_RS15340	0.81	+0.2
3,438,221	+		HER17_RS15340	0.81	-0.3
3,438,349	+		HER17_RS15340	0.85	+0.4
3,438,350	-		HER17_RS15340	0.85	+1.2
3,438,356	-		HER17_RS15340	0.85	-0.2
3,438,389	+		HER17_RS15340	0.86	-0.5
3,438,390	-		HER17_RS15340	0.87	+0.4
3,438,390	-		HER17_RS15340	0.87	+1.4
3,438,390	-		HER17_RS15340	0.87	+1.0
3,438,468	+		HER17_RS15340	0.89	+0.4
3,438,469	-		HER17_RS15340	0.89	+0.1
3,438,628	+				+0.1
3,438,689	-				-1.0
3,438,785	+				+0.4
3,438,785	+				-0.0
3,438,785	+				-0.2
3,438,785	+				-0.6
3,438,786	-				+0.6
3,438,786	-				+0.6
3,438,788	+				+0.1
3,438,789	-				+0.9
3,438,789	-				-0.8
3,438,836	-				+0.4
3,438,836	-				+0.3
3,438,836	-				+0.4
3,438,838	+				+1.3
3,438,839	-				+0.2
3,438,839	-				+0.2
3,438,841	+				-2.6
3,438,841	+				-0.6
3,438,841	+				+1.0
3,438,841	+				-0.1
3,438,842	-				+0.0
3,438,842	-				+0.3
3,438,842	-				+0.5
3,438,855	+				+0.3
3,438,855	+				-0.5
3,438,856	-				-0.1
3,438,877	-				-0.4
3,438,895	+				-0.6
3,438,897	+				+0.3
3,438,898	-				+0.3
3,438,898	-				-0.5
3,438,913	+				+0.5
3,438,914	-				+0.3
3,438,915	+				+0.4
3,438,915	+				-0.5
3,438,915	+				-0.7
3,438,916	-				+0.8
3,438,916	-				-0.2
3,438,916	-				-0.1
3,438,916	-				+0.2
3,438,916	-				+0.4
3,438,916	-				+0.2
3,438,919	+				-0.2
3,438,919	+				-0.5
3,438,945	+				-0.4
3,438,945	+				+0.7
3,438,946	-				-0.6
3,438,946	-				+0.6
3,438,946	-				+0.3
3,438,946	-				+0.2
3,438,946	-				+0.1
3,438,946	-				-0.3
3,438,946	-				-0.2
3,438,946	-				+0.2
3,438,946	-				+0.4
3,438,960	+				+0.1
3,438,961	-				+0.4
3,438,972	-				+0.2
3,438,972	-				-0.3
3,439,071	-				-1.9
3,439,076	+				+0.5
3,439,077	-				-0.4
3,439,079	+				-0.6
3,439,079	+				-0.4
3,439,080	-				+0.4
3,439,080	-				-0.1
3,439,080	-				+1.1
3,439,142	+				+1.0
3,439,142	+				-0.1
3,439,142	+				-1.0
3,439,142	+				+0.1
3,439,142	+				-0.5
3,439,142	+				+0.6
3,439,142	+				+0.5
3,439,142	+				+0.8
3,439,142	+				+0.0
3,439,142	+				+0.2
3,439,143	-				-0.6
3,439,143	-				-0.1
3,439,143	-				-2.3
3,439,143	-				+0.1
3,439,143	-				+0.7
3,439,143	-				-0.0
3,439,143	-				-0.1
3,439,169	+		HER17_RS15345	0.10	+0.4
3,439,169	+		HER17_RS15345	0.10	-0.2
3,439,256	-		HER17_RS15345	0.13	+0.2
3,439,366	+		HER17_RS15345	0.17	+1.0
3,439,366	+		HER17_RS15345	0.17	+0.2
3,439,366	+		HER17_RS15345	0.17	-0.1
3,439,367	-		HER17_RS15345	0.17	-0.3
3,439,367	-		HER17_RS15345	0.17	+0.5
3,439,367	-		HER17_RS15345	0.17	-0.4
3,439,367	-		HER17_RS15345	0.17	+1.0
3,439,531	-		HER17_RS15345	0.23	-0.1
3,439,531	-		HER17_RS15345	0.23	-0.3
3,439,536	+		HER17_RS15345	0.24	-0.8
3,439,536	+		HER17_RS15345	0.24	+0.5
3,439,536	+		HER17_RS15345	0.24	-0.3
3,439,536	+		HER17_RS15345	0.24	-0.4
3,439,536	+		HER17_RS15345	0.24	-0.7
3,439,536	+		HER17_RS15345	0.24	+0.7
3,439,537	-		HER17_RS15345	0.24	-0.1
3,439,652	+		HER17_RS15345	0.28	-0.3
3,439,705	+		HER17_RS15345	0.30	-0.6
3,439,796	-		HER17_RS15345	0.33	+0.3
3,439,941	+		HER17_RS15345	0.39	+0.1
3,440,009	+		HER17_RS15345	0.41	+0.1
3,440,081	+		HER17_RS15345	0.44	-1.3
3,440,117	+		HER17_RS15345	0.45	-0.0
3,440,118	-		HER17_RS15345	0.45	+0.2
3,440,139	+		HER17_RS15345	0.46	-0.3
3,440,139	+		HER17_RS15345	0.46	-0.2
3,440,140	-		HER17_RS15345	0.46	-0.4
3,440,160	-		HER17_RS15345	0.47	+1.0
3,440,205	+		HER17_RS15345	0.48	-2.0
3,440,205	+		HER17_RS15345	0.48	+0.1
3,440,205	+		HER17_RS15345	0.48	+0.3
3,440,206	-		HER17_RS15345	0.48	+0.3
3,440,250	+		HER17_RS15345	0.50	-0.6
3,440,327	+		HER17_RS15345	0.53	+0.5
3,440,327	+		HER17_RS15345	0.53	-0.3
3,440,328	-		HER17_RS15345	0.53	-1.8
3,440,329	+		HER17_RS15345	0.53	+1.4
3,440,329	+		HER17_RS15345	0.53	-0.1
3,440,330	-		HER17_RS15345	0.53	+0.5
3,440,330	-		HER17_RS15345	0.53	+2.2
3,440,430	+		HER17_RS15345	0.57	-0.3
3,440,431	-		HER17_RS15345	0.57	-0.3
3,440,455	-		HER17_RS15345	0.57	-0.1
3,440,502	+		HER17_RS15345	0.59	+1.1
3,440,503	-		HER17_RS15345	0.59	-0.6
3,440,503	-		HER17_RS15345	0.59	-0.6
3,440,568	+		HER17_RS15345	0.62	+0.0
3,440,568	+		HER17_RS15345	0.62	+0.3
3,440,569	-		HER17_RS15345	0.62	-0.4
3,440,569	-		HER17_RS15345	0.62	+0.5
3,440,569	-		HER17_RS15345	0.62	-0.5
3,440,571	-		HER17_RS15345	0.62	-0.5
3,440,571	-		HER17_RS15345	0.62	-0.1
3,440,657	-		HER17_RS15345	0.65	-1.9
3,440,657	-		HER17_RS15345	0.65	-0.5
3,440,699	-		HER17_RS15345	0.66	-0.1
3,440,719	-		HER17_RS15345	0.67	+0.5
3,440,730	-		HER17_RS15345	0.68	+1.0
3,440,912	+		HER17_RS15345	0.74	-0.3
3,440,998	+		HER17_RS15345	0.77	-0.5
3,440,999	-		HER17_RS15345	0.78	+0.0
3,441,001	+		HER17_RS15345	0.78	+0.6
3,441,001	+		HER17_RS15345	0.78	+0.4
3,441,002	-		HER17_RS15345	0.78	+0.0
3,441,002	-		HER17_RS15345	0.78	+0.5
3,441,002	-		HER17_RS15345	0.78	-0.2
3,441,002	-		HER17_RS15345	0.78	+0.2
3,441,002	-		HER17_RS15345	0.78	-0.0
3,441,005	+		HER17_RS15345	0.78	+0.7
3,441,053	+		HER17_RS15345	0.80	+1.0
3,441,053	+		HER17_RS15345	0.80	-0.4
3,441,080	-		HER17_RS15345	0.81	+0.2
3,441,168	+		HER17_RS15345	0.84	+0.4
3,441,215	-		HER17_RS15345	0.85	-0.5
3,441,242	+		HER17_RS15345	0.86	+0.2
3,441,253	+		HER17_RS15345	0.87	+0.2
3,441,286	+		HER17_RS15345	0.88	-0.4
3,441,286	+		HER17_RS15345	0.88	-0.5
3,441,287	-		HER17_RS15345	0.88	+0.2
3,441,287	-		HER17_RS15345	0.88	-0.9
3,441,308	+		HER17_RS15345	0.89	+0.6
3,441,309	-		HER17_RS15345	0.89	+0.8
3,441,310	+		HER17_RS15345	0.89	-0.6
3,441,310	+		HER17_RS15345	0.89	+0.3
3,441,310	+		HER17_RS15345	0.89	+0.2
3,441,311	-		HER17_RS15345	0.89	+1.1
3,441,311	-		HER17_RS15345	0.89	+0.5
3,441,311	-		HER17_RS15345	0.89	-0.5
3,441,311	-		HER17_RS15345	0.89	+0.0
3,441,402	+				+0.5
3,441,402	+				-0.2
3,441,403	-				+0.2
3,441,454	+				-1.2
3,441,454	+				-0.5
3,441,454	+				-0.0
3,441,510	-				-0.6
3,441,536	+				+0.0
3,441,537	-				-0.2
3,441,545	+				+0.3
3,441,593	+				-0.5
3,441,593	+				+1.0
3,441,594	-				-0.9
3,441,612	+				-0.1
3,441,612	+				-0.6
3,441,612	+				+0.3
3,441,612	+				-0.1
3,441,613	-				+0.0
3,441,613	-				+0.4
3,441,613	-				+0.1
3,441,761	+				-0.0
3,441,761	+				-1.2
3,441,762	-				+1.7
3,441,801	-				-0.4
3,441,838	+		HER17_RS15350	0.11	+0.0
3,441,838	+		HER17_RS15350	0.11	+0.3
3,442,024	-		HER17_RS15350	0.21	-0.8
3,442,176	+		HER17_RS15350	0.30	-0.4
3,442,177	-		HER17_RS15350	0.30	+1.1
3,442,269	+		HER17_RS15350	0.35	+0.1
3,442,269	+		HER17_RS15350	0.35	-0.9
3,442,309	-		HER17_RS15350	0.37	-0.0
3,442,356	-		HER17_RS15350	0.40	-0.6
3,442,379	+		HER17_RS15350	0.41	-0.2
3,442,380	-		HER17_RS15350	0.41	+1.0
3,442,405	-		HER17_RS15350	0.43	+0.4
3,442,444	+		HER17_RS15350	0.45	-2.4
3,442,460	-		HER17_RS15350	0.46	+0.3
3,442,583	+		HER17_RS15350	0.53	-0.2
3,442,584	-		HER17_RS15350	0.53	-0.3