Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08095

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,788,530	+				-3.0
1,788,531	-				+1.0
1,788,531	-				+0.0
1,788,531	-				+1.6
1,788,629	+				+0.8
1,788,632	-				+0.3
1,788,651	+				-0.9
1,788,652	-				+0.1
1,788,653	+				+0.1
1,788,654	-				+0.3
1,788,654	-				+0.2
1,788,661	+				+0.0
1,788,661	+				+0.5
1,788,661	+				-0.3
1,788,662	-				+0.3
1,788,662	-				+1.1
1,788,663	+				+0.1
1,788,668	+				+0.5
1,788,683	+				-0.1
1,788,727	+				+0.6
1,788,787	-		HER17_RS08090	0.16	-0.6
1,788,816	-		HER17_RS08090	0.19	+0.9
1,788,816	-		HER17_RS08090	0.19	-0.3
1,788,824	+		HER17_RS08090	0.20	+0.9
1,788,851	-		HER17_RS08090	0.23	+0.5
1,788,851	-		HER17_RS08090	0.23	+1.1
1,788,856	-		HER17_RS08090	0.24	-0.1
1,788,865	+		HER17_RS08090	0.25	+0.1
1,788,865	+		HER17_RS08090	0.25	-0.7
1,788,865	+		HER17_RS08090	0.25	-0.3
1,788,866	-		HER17_RS08090	0.25	-0.5
1,788,866	-		HER17_RS08090	0.25	-0.4
1,788,866	-		HER17_RS08090	0.25	-0.6
1,788,866	-		HER17_RS08090	0.25	+0.7
1,788,866	-		HER17_RS08090	0.25	-0.4
1,788,868	-		HER17_RS08090	0.25	+1.2
1,788,884	+		HER17_RS08090	0.27	-0.2
1,788,884	+		HER17_RS08090	0.27	+0.1
1,788,884	+		HER17_RS08090	0.27	-0.4
1,788,884	+		HER17_RS08090	0.27	+0.1
1,788,885	-		HER17_RS08090	0.27	+0.2
1,788,980	-		HER17_RS08090	0.38	-0.9
1,789,018	-		HER17_RS08090	0.42	-0.5
1,789,210	+		HER17_RS08090	0.64	+1.1
1,789,210	+		HER17_RS08090	0.64	-0.4
1,789,211	-		HER17_RS08090	0.64	+0.2
1,789,283	+		HER17_RS08090	0.72	+2.0
1,789,649	-		HER17_RS08095	0.12	+0.7
1,789,649	-		HER17_RS08095	0.12	-0.3
1,789,670	+		HER17_RS08095	0.14	+0.7
1,789,684	+		HER17_RS08095	0.15	+0.2
1,789,685	-		HER17_RS08095	0.15	+0.6
1,789,701	+		HER17_RS08095	0.16	-0.5
1,789,701	+		HER17_RS08095	0.16	+0.1
1,789,710	-		HER17_RS08095	0.17	+0.3
1,789,729	+		HER17_RS08095	0.19	+0.2
1,789,742	+		HER17_RS08095	0.20	-0.0
1,789,743	-		HER17_RS08095	0.20	-0.3
1,789,832	+		HER17_RS08095	0.29	+0.2
1,789,832	+		HER17_RS08095	0.29	+0.2
1,789,832	+		HER17_RS08095	0.29	-0.3
1,789,833	-		HER17_RS08095	0.29	+0.4
1,789,833	-		HER17_RS08095	0.29	+0.1
1,789,833	-		HER17_RS08095	0.29	+0.3
1,789,833	-		HER17_RS08095	0.29	+0.1
1,789,838	-		HER17_RS08095	0.29	+1.0
1,789,868	+		HER17_RS08095	0.32	-1.0
1,789,869	-		HER17_RS08095	0.32	+0.8
1,789,869	-		HER17_RS08095	0.32	-0.1
1,789,940	-		HER17_RS08095	0.39	+0.7
1,790,031	+		HER17_RS08095	0.48	-0.2
1,790,031	+		HER17_RS08095	0.48	+0.1
1,790,032	-		HER17_RS08095	0.48	+0.3
1,790,032	-		HER17_RS08095	0.48	-1.1
1,790,032	-		HER17_RS08095	0.48	+0.6
1,790,033	+		HER17_RS08095	0.48	+0.5
1,790,033	+		HER17_RS08095	0.48	-0.6
1,790,034	-		HER17_RS08095	0.48	-0.2
1,790,034	-		HER17_RS08095	0.48	+0.1
1,790,034	-		HER17_RS08095	0.48	-0.4
1,790,042	+		HER17_RS08095	0.49	+0.2
1,790,084	+		HER17_RS08095	0.53	+0.3
1,790,084	+		HER17_RS08095	0.53	+1.7
1,790,085	-		HER17_RS08095	0.53	-0.1
1,790,121	+		HER17_RS08095	0.56	+0.0
1,790,124	-		HER17_RS08095	0.57	+0.2
1,790,142	+		HER17_RS08095	0.58	+0.0
1,790,144	+		HER17_RS08095	0.58	+0.4
1,790,144	+		HER17_RS08095	0.58	+0.3
1,790,144	+		HER17_RS08095	0.58	+0.1
1,790,145	-		HER17_RS08095	0.59	+0.4
1,790,145	-		HER17_RS08095	0.59	+0.2
1,790,145	-		HER17_RS08095	0.59	-0.0
1,790,145	-		HER17_RS08095	0.59	-1.0
1,790,145	-		HER17_RS08095	0.59	+0.1
1,790,145	-		HER17_RS08095	0.59	-0.2
1,790,145	-		HER17_RS08095	0.59	+0.2
1,790,145	-		HER17_RS08095	0.59	+0.1
1,790,196	-		HER17_RS08095	0.63	-0.3
1,790,300	+		HER17_RS08095	0.73	+0.7
1,790,300	+		HER17_RS08095	0.73	-0.9
1,790,300	+		HER17_RS08095	0.73	+0.0
1,790,300	+		HER17_RS08095	0.73	-0.2
1,790,301	-		HER17_RS08095	0.73	+1.9
1,790,301	-		HER17_RS08095	0.73	-1.1
1,790,301	-		HER17_RS08095	0.73	-0.6
1,790,301	-		HER17_RS08095	0.73	-0.2
1,790,371	+		HER17_RS08095	0.80	-0.1
1,790,377	+		HER17_RS08095	0.80	-0.3
1,790,378	-		HER17_RS08095	0.81	+0.8
1,790,378	-		HER17_RS08095	0.81	+0.1
1,790,378	-		HER17_RS08095	0.81	+2.3
1,790,378	-		HER17_RS08095	0.81	-0.6
1,790,421	-		HER17_RS08095	0.85	+1.6
1,790,421	-		HER17_RS08095	0.85	+1.1
1,790,426	+		HER17_RS08095	0.85	+0.7
1,790,463	-		HER17_RS08095	0.89	+1.3
1,790,463	-		HER17_RS08095	0.89	-0.2
1,790,463	-		HER17_RS08095	0.89	-0.1
1,790,499	-				-0.9
1,790,634	+				-1.1
1,790,635	-				-0.0
1,790,666	-				-2.1
1,790,666	-				+0.0
1,790,689	+				-0.3
1,790,690	-				+0.6
1,790,690	-				-0.3
1,790,690	-				-0.1
1,790,690	-				-0.4
1,790,690	-				+1.5
1,790,690	-				+0.6
1,790,690	-				+0.0
1,790,698	+				+0.7
1,790,699	-				+0.4
1,790,758	+				-0.2
1,790,791	+				+0.2
1,790,791	+				-1.2
1,790,805	-				-0.5
1,790,859	-		HER17_RS08100	0.12	+0.1
1,790,900	+		HER17_RS08100	0.14	+0.0
1,790,901	-		HER17_RS08100	0.14	+1.4
1,790,901	-		HER17_RS08100	0.14	+0.4
1,790,924	+		HER17_RS08100	0.15	-1.2
1,790,961	+		HER17_RS08100	0.17	-0.1
1,790,962	-		HER17_RS08100	0.17	-0.1
1,790,962	-		HER17_RS08100	0.17	-0.6
1,790,964	-		HER17_RS08100	0.17	-0.2
1,790,964	-		HER17_RS08100	0.17	+0.3
1,791,000	-		HER17_RS08100	0.19	+0.7
1,791,063	-		HER17_RS08100	0.22	+0.7
1,791,063	-		HER17_RS08100	0.22	+0.6
1,791,069	-		HER17_RS08100	0.22	+0.5
1,791,069	-		HER17_RS08100	0.22	+0.4
1,791,077	-		HER17_RS08100	0.23	+0.7
1,791,080	+		HER17_RS08100	0.23	+0.1
1,791,081	-		HER17_RS08100	0.23	+0.5
1,791,104	-		HER17_RS08100	0.24	-0.3
1,791,167	+		HER17_RS08100	0.27	+0.2
1,791,196	+		HER17_RS08100	0.29	-1.4
1,791,196	+		HER17_RS08100	0.29	-0.2
1,791,197	-		HER17_RS08100	0.29	-0.8
1,791,450	-		HER17_RS08100	0.41	+0.7
1,791,482	+		HER17_RS08100	0.43	-0.1
1,791,482	+		HER17_RS08100	0.43	-1.1
1,791,483	-		HER17_RS08100	0.43	-0.1
1,791,503	-		HER17_RS08100	0.44	-1.3
1,791,503	-		HER17_RS08100	0.44	-0.3
1,791,579	-		HER17_RS08100	0.48	+0.3