Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08090

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,787,650	+		HER17_RS08080	0.21	+0.3
1,787,651	-		HER17_RS08080	0.21	+1.5
1,787,651	-		HER17_RS08080	0.21	+1.5
1,787,728	-		HER17_RS08080	0.43	+1.2
1,787,794	+		HER17_RS08080	0.62	+1.1
1,787,795	-		HER17_RS08080	0.62	+1.2
1,787,874	+		HER17_RS08080	0.85	+1.9
1,787,875	-		HER17_RS08080	0.85	+0.7
1,787,875	-		HER17_RS08080	0.85	+0.5
1,787,886	+		HER17_RS08080	0.88	+1.4
1,787,886	+		HER17_RS08080	0.88	+1.3
1,787,886	+		HER17_RS08080	0.88	+1.2
1,787,925	-				+1.3
1,787,925	-				+0.0
1,787,925	-				+3.4
1,787,928	+				+0.5
1,787,928	+				+1.3
1,787,928	+				+1.2
1,787,929	-				+1.1
1,787,929	-				+1.9
1,788,140	-		HER17_RS08085	0.36	+1.4
1,788,140	-		HER17_RS08085	0.36	+1.0
1,788,140	-		HER17_RS08085	0.36	+1.3
1,788,297	+		HER17_RS08085	0.63	+1.3
1,788,319	+		HER17_RS08085	0.67	+0.9
1,788,330	+		HER17_RS08085	0.69	+1.2
1,788,331	-		HER17_RS08085	0.69	+2.3
1,788,340	+		HER17_RS08085	0.71	+0.5
1,788,340	+		HER17_RS08085	0.71	+1.6
1,788,340	+		HER17_RS08085	0.71	+1.5
1,788,340	+		HER17_RS08085	0.71	+1.2
1,788,341	-		HER17_RS08085	0.71	+1.9
1,788,341	-		HER17_RS08085	0.71	+0.7
1,788,401	-		HER17_RS08085	0.81	+1.5
1,788,401	-		HER17_RS08085	0.81	+1.4
1,788,465	+				+0.5
1,788,465	+				-0.7
1,788,465	+				+0.0
1,788,466	-				-0.0
1,788,466	-				+0.1
1,788,466	-				+0.5
1,788,492	+				+0.2
1,788,530	+				-3.0
1,788,531	-				+1.0
1,788,531	-				+0.0
1,788,531	-				+1.6
1,788,629	+				+0.8
1,788,632	-				+0.3
1,788,651	+				-0.9
1,788,652	-				+0.1
1,788,653	+				+0.1
1,788,654	-				+0.3
1,788,654	-				+0.2
1,788,661	+				+0.0
1,788,661	+				+0.5
1,788,661	+				-0.3
1,788,662	-				+0.3
1,788,662	-				+1.1
1,788,663	+				+0.1
1,788,668	+				+0.5
1,788,683	+				-0.1
1,788,727	+				+0.6
1,788,787	-		HER17_RS08090	0.16	-0.6
1,788,816	-		HER17_RS08090	0.19	+0.9
1,788,816	-		HER17_RS08090	0.19	-0.3
1,788,824	+		HER17_RS08090	0.20	+0.9
1,788,851	-		HER17_RS08090	0.23	+0.5
1,788,851	-		HER17_RS08090	0.23	+1.1
1,788,856	-		HER17_RS08090	0.24	-0.1
1,788,865	+		HER17_RS08090	0.25	+0.1
1,788,865	+		HER17_RS08090	0.25	-0.7
1,788,865	+		HER17_RS08090	0.25	-0.3
1,788,866	-		HER17_RS08090	0.25	-0.5
1,788,866	-		HER17_RS08090	0.25	-0.4
1,788,866	-		HER17_RS08090	0.25	-0.6
1,788,866	-		HER17_RS08090	0.25	+0.7
1,788,866	-		HER17_RS08090	0.25	-0.4
1,788,868	-		HER17_RS08090	0.25	+1.2
1,788,884	+		HER17_RS08090	0.27	-0.2
1,788,884	+		HER17_RS08090	0.27	+0.1
1,788,884	+		HER17_RS08090	0.27	-0.4
1,788,884	+		HER17_RS08090	0.27	+0.1
1,788,885	-		HER17_RS08090	0.27	+0.2
1,788,980	-		HER17_RS08090	0.38	-0.9
1,789,018	-		HER17_RS08090	0.42	-0.5
1,789,210	+		HER17_RS08090	0.64	+1.1
1,789,210	+		HER17_RS08090	0.64	-0.4
1,789,211	-		HER17_RS08090	0.64	+0.2
1,789,283	+		HER17_RS08090	0.72	+2.0
1,789,649	-		HER17_RS08095	0.12	+0.7
1,789,649	-		HER17_RS08095	0.12	-0.3
1,789,670	+		HER17_RS08095	0.14	+0.7
1,789,684	+		HER17_RS08095	0.15	+0.2
1,789,685	-		HER17_RS08095	0.15	+0.6
1,789,701	+		HER17_RS08095	0.16	-0.5
1,789,701	+		HER17_RS08095	0.16	+0.1
1,789,710	-		HER17_RS08095	0.17	+0.3
1,789,729	+		HER17_RS08095	0.19	+0.2
1,789,742	+		HER17_RS08095	0.20	-0.0
1,789,743	-		HER17_RS08095	0.20	-0.3
1,789,832	+		HER17_RS08095	0.29	+0.2
1,789,832	+		HER17_RS08095	0.29	+0.2
1,789,832	+		HER17_RS08095	0.29	-0.3
1,789,833	-		HER17_RS08095	0.29	+0.4
1,789,833	-		HER17_RS08095	0.29	+0.1
1,789,833	-		HER17_RS08095	0.29	+0.3
1,789,833	-		HER17_RS08095	0.29	+0.1
1,789,838	-		HER17_RS08095	0.29	+1.0
1,789,868	+		HER17_RS08095	0.32	-1.0
1,789,869	-		HER17_RS08095	0.32	+0.8
1,789,869	-		HER17_RS08095	0.32	-0.1
1,789,940	-		HER17_RS08095	0.39	+0.7
1,790,031	+		HER17_RS08095	0.48	-0.2
1,790,031	+		HER17_RS08095	0.48	+0.1
1,790,032	-		HER17_RS08095	0.48	+0.3
1,790,032	-		HER17_RS08095	0.48	-1.1
1,790,032	-		HER17_RS08095	0.48	+0.6
1,790,033	+		HER17_RS08095	0.48	+0.5
1,790,033	+		HER17_RS08095	0.48	-0.6
1,790,034	-		HER17_RS08095	0.48	-0.2
1,790,034	-		HER17_RS08095	0.48	+0.1
1,790,034	-		HER17_RS08095	0.48	-0.4
1,790,042	+		HER17_RS08095	0.49	+0.2
1,790,084	+		HER17_RS08095	0.53	+0.3
1,790,084	+		HER17_RS08095	0.53	+1.7
1,790,085	-		HER17_RS08095	0.53	-0.1
1,790,121	+		HER17_RS08095	0.56	+0.0
1,790,124	-		HER17_RS08095	0.57	+0.2
1,790,142	+		HER17_RS08095	0.58	+0.0
1,790,144	+		HER17_RS08095	0.58	+0.4
1,790,144	+		HER17_RS08095	0.58	+0.3
1,790,144	+		HER17_RS08095	0.58	+0.1
1,790,145	-		HER17_RS08095	0.59	+0.4
1,790,145	-		HER17_RS08095	0.59	+0.2
1,790,145	-		HER17_RS08095	0.59	-0.0
1,790,145	-		HER17_RS08095	0.59	-1.0
1,790,145	-		HER17_RS08095	0.59	+0.1
1,790,145	-		HER17_RS08095	0.59	-0.2
1,790,145	-		HER17_RS08095	0.59	+0.2
1,790,145	-		HER17_RS08095	0.59	+0.1
1,790,196	-		HER17_RS08095	0.63	-0.3
1,790,300	+		HER17_RS08095	0.73	+0.7
1,790,300	+		HER17_RS08095	0.73	-0.9
1,790,300	+		HER17_RS08095	0.73	+0.0
1,790,300	+		HER17_RS08095	0.73	-0.2
1,790,301	-		HER17_RS08095	0.73	+1.9
1,790,301	-		HER17_RS08095	0.73	-1.1
1,790,301	-		HER17_RS08095	0.73	-0.6
1,790,301	-		HER17_RS08095	0.73	-0.2
1,790,371	+		HER17_RS08095	0.80	-0.1
1,790,377	+		HER17_RS08095	0.80	-0.3
1,790,378	-		HER17_RS08095	0.81	+0.8
1,790,378	-		HER17_RS08095	0.81	+0.1
1,790,378	-		HER17_RS08095	0.81	+2.3
1,790,378	-		HER17_RS08095	0.81	-0.6
1,790,421	-		HER17_RS08095	0.85	+1.6
1,790,421	-		HER17_RS08095	0.85	+1.1
1,790,426	+		HER17_RS08095	0.85	+0.7
1,790,463	-		HER17_RS08095	0.89	+1.3
1,790,463	-		HER17_RS08095	0.89	-0.2
1,790,463	-		HER17_RS08095	0.89	-0.1
1,790,499	-				-0.9