Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07060

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,562,464	+		HER17_RS07050	0.55	-0.2
1,562,465	-		HER17_RS07050	0.55	+1.0
1,562,465	-		HER17_RS07050	0.55	+0.3
1,562,520	+		HER17_RS07050	0.61	-0.1
1,562,520	+		HER17_RS07050	0.61	+0.8
1,562,521	-		HER17_RS07050	0.61	+0.9
1,562,523	+		HER17_RS07050	0.61	-0.1
1,562,524	-		HER17_RS07050	0.61	+0.3
1,562,546	-		HER17_RS07050	0.64	-0.3
1,562,576	+		HER17_RS07050	0.67	+0.1
1,562,662	+		HER17_RS07050	0.77	+1.8
1,562,663	-		HER17_RS07050	0.77	+1.0
1,562,716	+		HER17_RS07050	0.83	+0.4
1,562,717	-		HER17_RS07050	0.83	+0.8
1,562,717	-		HER17_RS07050	0.83	-2.0
1,562,734	-		HER17_RS07050	0.85	-0.1
1,562,761	+		HER17_RS07050	0.88	-1.8
1,562,858	+				-1.1
1,562,858	+				-1.3
1,562,859	-				-1.6
1,562,859	-				-0.0
1,562,859	-				+0.1
1,562,864	+				-0.7
1,562,864	+				+0.8
1,562,865	-				-0.6
1,562,865	-				+0.2
1,562,865	-				+0.7
1,562,889	+				-0.5
1,562,955	-		HER17_RS07055	0.18	-0.7
1,562,955	-		HER17_RS07055	0.18	+0.5
1,562,960	+		HER17_RS07055	0.19	+0.6
1,562,960	+		HER17_RS07055	0.19	-1.4
1,562,970	+		HER17_RS07055	0.22	+1.5
1,562,970	+		HER17_RS07055	0.22	+0.9
1,562,970	+		HER17_RS07055	0.22	-0.8
1,562,971	-		HER17_RS07055	0.22	-0.5
1,562,971	-		HER17_RS07055	0.22	+0.8
1,562,971	-		HER17_RS07055	0.22	+0.7
1,563,044	-		HER17_RS07055	0.42	+0.3
1,563,084	+		HER17_RS07055	0.53	-0.3
1,563,169	+		HER17_RS07055	0.76	+0.7
1,563,170	-		HER17_RS07055	0.76	+0.7
1,563,175	+		HER17_RS07055	0.77	+0.2
1,563,227	-				+0.7
1,563,247	-				+0.3
1,563,285	-				+1.0
1,563,314	-				+0.8
1,563,328	+				+0.7
1,563,328	+				-0.3
1,563,328	+				+0.5
1,563,329	-				-0.3
1,563,329	-				+1.1
1,563,329	-				-0.1
1,563,337	+				-0.2
1,563,337	+				+0.0
1,563,337	+				+0.4
1,563,338	-				-0.1
1,563,342	+				-0.4
1,563,352	+				+0.6
1,563,386	+				-0.1
1,563,441	+				-0.1
1,563,441	+				+1.4
1,563,441	+				-0.4
1,563,441	+				-0.9
1,563,442	-				+0.9
1,563,443	+				-2.0
1,563,494	+		HER17_RS07060	0.17	+0.4
1,563,495	-		HER17_RS07060	0.18	+0.9
1,563,495	-		HER17_RS07060	0.18	+0.1
1,563,495	-		HER17_RS07060	0.18	+0.3
1,563,536	+		HER17_RS07060	0.24	+0.5
1,563,551	-		HER17_RS07060	0.26	-0.2
1,563,591	-		HER17_RS07060	0.33	+0.4
1,563,650	+		HER17_RS07060	0.42	+0.4
1,563,651	-		HER17_RS07060	0.42	+0.9
1,563,651	-		HER17_RS07060	0.42	+0.0
1,563,718	+		HER17_RS07060	0.53	-0.4
1,563,719	-		HER17_RS07060	0.53	-0.2
1,563,739	+		HER17_RS07060	0.56	+0.1
1,563,739	+		HER17_RS07060	0.56	+0.4
1,563,740	-		HER17_RS07060	0.57	-2.2
1,563,740	-		HER17_RS07060	0.57	-0.6
1,563,754	+		HER17_RS07060	0.59	+1.6
1,563,779	+		HER17_RS07060	0.63	+1.0
1,563,779	+		HER17_RS07060	0.63	+0.5
1,563,780	-		HER17_RS07060	0.63	-0.2
1,563,810	+		HER17_RS07060	0.68	+1.1
1,563,868	-		HER17_RS07060	0.77	-0.1
1,563,868	-		HER17_RS07060	0.77	-0.7
1,563,915	+		HER17_RS07060	0.85	+0.4
1,563,916	-		HER17_RS07060	0.85	+0.4
1,563,945	+		HER17_RS07060	0.89	+0.4
1,563,946	-		HER17_RS07060	0.89	+0.5
1,563,946	-		HER17_RS07060	0.89	+0.6
1,563,946	-		HER17_RS07060	0.89	-0.1
1,563,946	-		HER17_RS07060	0.89	+0.4
1,563,946	-		HER17_RS07060	0.89	+1.1
1,563,995	+				-0.3
1,564,095	+				-0.5
1,564,095	+				+1.0
1,564,100	+				+0.0
1,564,202	+				-0.1
1,564,207	+				+0.5
1,564,208	-				+0.7
1,564,208	-				-0.3
1,564,208	-				-0.8
1,564,240	+				-0.0
1,564,252	+				+0.0
1,564,252	+				+1.0
1,564,252	+				-0.0
1,564,253	-				+0.3
1,564,254	+				+0.1
1,564,254	+				-0.6
1,564,255	-				+0.3
1,564,269	+				+0.3
1,564,299	+				+1.5
1,564,299	+				-0.3
1,564,299	+				-0.6
1,564,300	-				+1.4
1,564,449	+		HER17_RS07065	0.32	+0.0
1,564,449	+		HER17_RS07065	0.32	+0.5
1,564,457	+		HER17_RS07065	0.33	+1.5
1,564,457	+		HER17_RS07065	0.33	+0.5
1,564,457	+		HER17_RS07065	0.33	-0.1
1,564,457	+		HER17_RS07065	0.33	+0.3
1,564,458	-		HER17_RS07065	0.33	+0.5
1,564,458	-		HER17_RS07065	0.33	+0.3
1,564,468	+		HER17_RS07065	0.35	+0.6
1,564,468	+		HER17_RS07065	0.35	+0.2
1,564,468	+		HER17_RS07065	0.35	-0.4
1,564,468	+		HER17_RS07065	0.35	+0.2
1,564,555	-		HER17_RS07065	0.51	-0.2
1,564,595	+		HER17_RS07065	0.58	-0.7
1,564,641	+		HER17_RS07065	0.66	+1.0
1,564,641	+		HER17_RS07065	0.66	+0.4
1,564,641	+		HER17_RS07065	0.66	+0.6
1,564,641	+		HER17_RS07065	0.66	-0.3
1,564,642	-		HER17_RS07065	0.67	+0.1
1,564,642	-		HER17_RS07065	0.67	+1.9
1,564,642	-		HER17_RS07065	0.67	+0.1
1,564,642	-		HER17_RS07065	0.67	+0.7
1,564,642	-		HER17_RS07065	0.67	-0.7
1,564,643	+		HER17_RS07065	0.67	-0.2
1,564,643	+		HER17_RS07065	0.67	-2.7
1,564,643	+		HER17_RS07065	0.67	-0.2
1,564,643	+		HER17_RS07065	0.67	+0.8
1,564,643	+		HER17_RS07065	0.67	+0.4
1,564,644	-		HER17_RS07065	0.67	+0.9
1,564,644	-		HER17_RS07065	0.67	-0.9
1,564,651	+		HER17_RS07065	0.68	+0.6
1,564,651	+		HER17_RS07065	0.68	+0.6
1,564,651	+		HER17_RS07065	0.68	+0.5
1,564,651	+		HER17_RS07065	0.68	+0.3
1,564,652	-		HER17_RS07065	0.68	+0.2
1,564,652	-		HER17_RS07065	0.68	-1.0
1,564,652	-		HER17_RS07065	0.68	+1.2
1,564,743	-		HER17_RS07065	0.85	-1.1
1,564,749	+		HER17_RS07065	0.86	+0.6
1,564,749	+		HER17_RS07065	0.86	-0.2
1,564,782	+				-0.2
1,564,798	+				-0.7
1,564,798	+				+0.5
1,564,799	-				-0.0
1,564,799	-				-0.6
1,564,817	-				-0.9
1,564,823	+				+0.9
1,564,823	+				-0.5
1,564,833	+				+0.5
1,564,833	+				-0.3
1,564,833	+				-0.0
1,564,834	-				+0.8
1,564,834	-				-1.2
1,564,834	-				-0.6
1,564,834	-				-1.3
1,564,834	-				+0.8
1,564,834	-				-0.0
1,564,834	-				-0.7
1,564,835	+				-1.1
1,564,836	-				-0.0
1,564,877	+				-0.2
1,564,877	+				+1.1
1,564,877	+				-0.1
1,564,878	-				-1.1
1,564,878	-				-0.6
1,564,931	-				+0.5
1,564,933	+				-0.0
1,564,933	+				+0.0
1,564,933	+				+0.7