Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05905

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,306,449	-		HER17_RS05895	0.50	+0.2
1,306,449	-		HER17_RS05895	0.50	+0.6
1,306,517	+		HER17_RS05895	0.61	-0.3
1,306,591	-		HER17_RS05895	0.73	-1.0
1,306,664	+		HER17_RS05895	0.84	+0.6
1,306,706	+				+0.2
1,306,706	+				-0.1
1,306,707	-				+0.3
1,306,775	+				+0.4
1,306,776	-				+0.4
1,306,788	+				+0.1
1,306,788	+				+0.4
1,306,789	-				+0.0
1,306,789	-				+0.2
1,306,792	+				+0.2
1,306,792	+				-1.0
1,306,792	+				+0.1
1,306,792	+				+1.3
1,306,792	+				+0.1
1,306,792	+				-1.6
1,306,792	+				+0.1
1,306,792	+				-0.3
1,306,792	+				-0.1
1,306,793	-				-0.7
1,306,793	-				-1.9
1,306,793	-				+1.0
1,306,793	-				+0.4
1,306,793	-				+0.5
1,306,793	-				-0.2
1,306,794	+				+0.5
1,306,794	+				+0.4
1,306,795	-				-0.9
1,307,297	+				-0.2
1,307,371	+				+1.3
1,307,438	+				+0.5
1,307,445	+				-0.6
1,307,446	-				-0.1
1,307,464	+				-0.4
1,307,464	+				-0.4
1,307,465	-				+0.7
1,307,465	-				-0.1
1,307,465	-				+0.9
1,307,465	-				+0.7
1,307,466	+				-0.3
1,307,466	+				+0.3
1,307,467	-				-0.2
1,307,467	-				+0.0
1,307,487	+				-2.2
1,307,487	+				-0.6
1,307,487	+				-1.1
1,307,488	-				+0.8
1,307,488	-				-0.3
1,307,488	-				-0.1
1,307,488	-				+0.4
1,307,491	+				-0.3
1,307,491	+				-2.4
1,307,491	+				-0.8
1,307,493	+				+0.7
1,307,493	+				-3.0
1,307,494	-				+2.4
1,307,494	-				-0.3
1,307,494	-				+0.7
1,307,514	+		HER17_RS05905	0.10	-1.9
1,307,535	+		HER17_RS05905	0.12	+0.4
1,307,535	+		HER17_RS05905	0.12	+0.4
1,307,536	-		HER17_RS05905	0.12	-0.7
1,307,536	-		HER17_RS05905	0.12	+0.2
1,307,536	-		HER17_RS05905	0.12	+0.3
1,307,621	-		HER17_RS05905	0.17	-0.7
1,307,644	-		HER17_RS05905	0.19	+1.4
1,307,655	+		HER17_RS05905	0.20	-1.8
1,307,655	+		HER17_RS05905	0.20	+0.6
1,307,655	+		HER17_RS05905	0.20	-0.4
1,307,655	+		HER17_RS05905	0.20	+0.6
1,307,728	+		HER17_RS05905	0.25	-0.0
1,307,728	+		HER17_RS05905	0.25	-0.4
1,307,728	+		HER17_RS05905	0.25	+1.1
1,307,728	+		HER17_RS05905	0.25	+0.6
1,307,729	-		HER17_RS05905	0.25	+0.1
1,307,729	-		HER17_RS05905	0.25	-0.3
1,307,729	-		HER17_RS05905	0.25	-0.2
1,307,729	-		HER17_RS05905	0.25	+0.8
1,307,729	-		HER17_RS05905	0.25	-0.2
1,307,730	+		HER17_RS05905	0.25	-0.6
1,307,730	+		HER17_RS05905	0.25	-0.2
1,307,730	+		HER17_RS05905	0.25	+0.3
1,307,730	+		HER17_RS05905	0.25	+0.4
1,307,730	+		HER17_RS05905	0.25	-0.1
1,307,730	+		HER17_RS05905	0.25	+0.8
1,307,731	-		HER17_RS05905	0.25	+0.4
1,307,731	-		HER17_RS05905	0.25	+0.1
1,307,731	-		HER17_RS05905	0.25	+0.1
1,307,731	-		HER17_RS05905	0.25	-0.3
1,307,731	-		HER17_RS05905	0.25	+0.7
1,307,731	-		HER17_RS05905	0.25	-0.3
1,307,731	-		HER17_RS05905	0.25	+1.0
1,307,800	+		HER17_RS05905	0.29	-0.7
1,307,872	-		HER17_RS05905	0.34	-0.6
1,307,971	+		HER17_RS05905	0.41	-1.3
1,307,972	-		HER17_RS05905	0.41	-0.6
1,307,972	-		HER17_RS05905	0.41	-0.7
1,307,986	-		HER17_RS05905	0.42	-1.2
1,308,012	+		HER17_RS05905	0.43	+0.7
1,308,013	-		HER17_RS05905	0.43	+0.1
1,308,109	+		HER17_RS05905	0.50	-0.5
1,308,109	+		HER17_RS05905	0.50	+0.6
1,308,110	-		HER17_RS05905	0.50	+1.1
1,308,110	-		HER17_RS05905	0.50	-0.6
1,308,110	-		HER17_RS05905	0.50	-0.0
1,308,111	+		HER17_RS05905	0.50	+0.0
1,308,111	+		HER17_RS05905	0.50	+0.4
1,308,111	+		HER17_RS05905	0.50	-0.4
1,308,111	+		HER17_RS05905	0.50	+1.3
1,308,111	+		HER17_RS05905	0.50	+0.6
1,308,112	-		HER17_RS05905	0.50	+0.3
1,308,179	+		HER17_RS05905	0.54	+0.9
1,308,180	-		HER17_RS05905	0.55	+0.0
1,308,208	+		HER17_RS05905	0.56	+0.0
1,308,208	+		HER17_RS05905	0.56	-1.0
1,308,208	+		HER17_RS05905	0.56	+1.0
1,308,208	+		HER17_RS05905	0.56	-0.4
1,308,208	+		HER17_RS05905	0.56	-0.1
1,308,209	-		HER17_RS05905	0.56	+0.4
1,308,209	-		HER17_RS05905	0.56	+0.8
1,308,209	-		HER17_RS05905	0.56	+0.4
1,308,209	-		HER17_RS05905	0.56	-0.2
1,308,209	-		HER17_RS05905	0.56	-0.8
1,308,210	+		HER17_RS05905	0.57	+0.4
1,308,211	-		HER17_RS05905	0.57	-0.3
1,308,243	-		HER17_RS05905	0.59	+0.1
1,308,243	-		HER17_RS05905	0.59	-0.2
1,308,243	-		HER17_RS05905	0.59	+0.7
1,308,282	-		HER17_RS05905	0.61	+1.4
1,308,306	-		HER17_RS05905	0.63	-0.2
1,308,320	-		HER17_RS05905	0.64	+0.0
1,308,426	+		HER17_RS05905	0.71	+0.3
1,308,427	-		HER17_RS05905	0.71	+0.5
1,308,429	+		HER17_RS05905	0.71	-0.2
1,308,430	-		HER17_RS05905	0.71	+1.3
1,308,430	-		HER17_RS05905	0.71	-0.2
1,308,430	-		HER17_RS05905	0.71	+0.1
1,308,430	-		HER17_RS05905	0.71	+0.8
1,308,472	-		HER17_RS05905	0.74	+0.1
1,308,472	-		HER17_RS05905	0.74	+1.8
1,308,472	-		HER17_RS05905	0.74	+0.4
1,308,636	+		HER17_RS05905	0.85	+0.3
1,308,637	-		HER17_RS05905	0.85	+1.2
1,308,664	+		HER17_RS05905	0.87	-0.4
1,308,665	-		HER17_RS05905	0.87	-0.7
1,308,665	-		HER17_RS05905	0.87	+0.7
1,308,701	+		HER17_RS05905	0.89	+0.6
1,308,702	-		HER17_RS05905	0.89	+0.1
1,308,702	-		HER17_RS05905	0.89	-0.1
1,308,730	+				+0.4
1,308,730	+				+0.5
1,308,730	+				+0.2
1,308,730	+				+0.3
1,308,731	-				-0.2
1,308,731	-				-0.2
1,308,755	+				+0.9
1,308,755	+				+0.4
1,308,804	+				+0.4
1,308,916	-				+0.6
1,309,002	+				+1.2
1,309,002	+				-0.3
1,309,002	+				+0.1
1,309,004	+				-0.8
1,309,004	+				-3.4
1,309,005	-				-1.7
1,309,005	-				-3.3
1,309,005	-				-3.0
1,309,007	+				+0.4
1,309,007	+				-1.6
1,309,008	-				-3.6
1,309,008	-				-3.6
1,309,076	+				-4.8
1,309,076	+				-1.9
1,309,076	+				-2.9
1,309,126	+				-3.2
1,309,129	+				-3.7
1,309,130	-				-2.7
1,309,178	+				-4.0
1,309,178	+				-1.9
1,309,179	-				-4.4
1,309,179	-				-4.5
1,309,179	-				-4.3
1,309,179	-				-6.1
1,309,188	-				-4.0
1,309,188	-				-2.2
1,309,188	-				-4.1
1,309,188	-				-0.6
1,309,192	-				-2.7
1,309,259	+				-4.6
1,309,260	-				-5.0
1,309,260	-				-2.1
1,309,366	+				-1.2
1,309,367	-				-4.5
1,309,386	+				-2.7
1,309,415	+				-1.8
1,309,415	+				-3.4
1,309,415	+				-4.6
1,309,415	+				-3.2
1,309,416	-				-1.2
1,309,416	-				-3.0
1,309,417	+				-4.0
1,309,499	-		HER17_RS05910	0.11	-4.7
1,309,499	-		HER17_RS05910	0.11	-1.6
1,309,697	+		HER17_RS05910	0.16	-2.2
1,309,697	+		HER17_RS05910	0.16	-4.0
1,309,697	+		HER17_RS05910	0.16	-2.2
1,309,697	+		HER17_RS05910	0.16	-3.9
1,309,697	+		HER17_RS05910	0.16	-0.6
1,309,697	+		HER17_RS05910	0.16	-2.9
1,309,697	+		HER17_RS05910	0.16	-4.0
1,309,698	-		HER17_RS05910	0.16	-2.6
1,309,698	-		HER17_RS05910	0.16	-3.1
1,309,698	-		HER17_RS05910	0.16	-2.1
1,309,698	-		HER17_RS05910	0.16	-1.9
1,309,698	-		HER17_RS05910	0.16	-4.9
1,309,698	-		HER17_RS05910	0.16	-4.2
1,309,698	-		HER17_RS05910	0.16	-4.9
1,309,698	-		HER17_RS05910	0.16	-2.4
1,309,698	-		HER17_RS05910	0.16	-2.4
1,309,698	-		HER17_RS05910	0.16	-2.9
1,309,699	+		HER17_RS05910	0.16	-3.9
1,309,699	+		HER17_RS05910	0.16	-3.0
1,309,699	+		HER17_RS05910	0.16	-3.4
1,309,700	-		HER17_RS05910	0.16	-5.1
1,309,700	-		HER17_RS05910	0.16	-3.6
1,309,844	+		HER17_RS05910	0.20	-4.4
1,309,845	-		HER17_RS05910	0.20	-2.9
1,309,845	-		HER17_RS05910	0.20	-4.7
1,309,845	-		HER17_RS05910	0.20	-4.1
1,309,847	-		HER17_RS05910	0.20	-3.9