Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02690

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS02685 and HER17_RS02690 are separated by 72 nucleotidesHER17_RS02690 and HER17_RS02695 are separated by 137 nucleotides HER17_RS02685: HER17_RS02685 - erythrose-4-phosphate dehydrogenase, at 602,157 to 603,173 _RS02685 HER17_RS02690: HER17_RS02690 - phosphoglycerate kinase, at 603,246 to 604,409 _RS02690 HER17_RS02695: HER17_RS02695 - class II fructose-bisphosphate aldolase, at 604,547 to 605,623 _RS02695 Position (kb) 603 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 602.246 kb on + strandat 602.258 kb on + strandat 602.304 kb on + strand, within HER17_RS02685at 602.304 kb on + strand, within HER17_RS02685at 602.361 kb on + strand, within HER17_RS02685at 602.361 kb on + strand, within HER17_RS02685at 602.361 kb on + strand, within HER17_RS02685at 602.361 kb on + strand, within HER17_RS02685at 602.361 kb on + strand, within HER17_RS02685at 602.362 kb on - strand, within HER17_RS02685at 602.362 kb on - strand, within HER17_RS02685at 602.378 kb on + strand, within HER17_RS02685at 602.378 kb on + strand, within HER17_RS02685at 602.379 kb on - strand, within HER17_RS02685at 602.434 kb on + strand, within HER17_RS02685at 602.435 kb on - strand, within HER17_RS02685at 602.464 kb on - strand, within HER17_RS02685at 602.464 kb on - strand, within HER17_RS02685at 602.570 kb on + strand, within HER17_RS02685at 602.756 kb on + strand, within HER17_RS02685at 602.757 kb on - strand, within HER17_RS02685at 602.792 kb on + strand, within HER17_RS02685at 602.793 kb on - strand, within HER17_RS02685at 602.795 kb on + strand, within HER17_RS02685at 602.795 kb on + strand, within HER17_RS02685at 602.795 kb on + strand, within HER17_RS02685at 602.795 kb on + strand, within HER17_RS02685at 602.796 kb on - strand, within HER17_RS02685at 602.796 kb on - strand, within HER17_RS02685at 602.796 kb on - strand, within HER17_RS02685at 602.945 kb on - strand, within HER17_RS02685at 602.978 kb on + strand, within HER17_RS02685at 602.978 kb on + strand, within HER17_RS02685at 602.980 kb on + strand, within HER17_RS02685at 602.981 kb on - strand, within HER17_RS02685at 602.981 kb on - strand, within HER17_RS02685at 602.988 kb on + strand, within HER17_RS02685at 602.989 kb on - strand, within HER17_RS02685at 602.989 kb on - strand, within HER17_RS02685at 603.086 kb on + strandat 603.087 kb on - strandat 603.141 kb on - strandat 603.141 kb on - strandat 603.171 kb on + strandat 603.172 kb on - strandat 603.172 kb on - strandat 603.175 kb on - strandat 603.199 kb on + strandat 603.199 kb on + strandat 603.218 kb on + strandat 604.407 kb on + strandat 604.407 kb on + strandat 604.407 kb on + strandat 604.417 kb on + strandat 604.417 kb on + strandat 604.417 kb on + strandat 604.454 kb on + strandat 604.496 kb on + strandat 604.496 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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602,246 + -2.0
602,258 + -3.0
602,304 + HER17_RS02685 0.14 -3.9
602,304 + HER17_RS02685 0.14 -2.7
602,361 + HER17_RS02685 0.20 -2.9
602,361 + HER17_RS02685 0.20 -3.7
602,361 + HER17_RS02685 0.20 -1.4
602,361 + HER17_RS02685 0.20 -2.6
602,361 + HER17_RS02685 0.20 -2.6
602,362 - HER17_RS02685 0.20 -2.0
602,362 - HER17_RS02685 0.20 -3.1
602,378 + HER17_RS02685 0.22 -1.7
602,378 + HER17_RS02685 0.22 -0.7
602,379 - HER17_RS02685 0.22 -2.6
602,434 + HER17_RS02685 0.27 -2.5
602,435 - HER17_RS02685 0.27 -2.2
602,464 - HER17_RS02685 0.30 -3.0
602,464 - HER17_RS02685 0.30 -1.7
602,570 + HER17_RS02685 0.41 -3.0
602,756 + HER17_RS02685 0.59 -2.6
602,757 - HER17_RS02685 0.59 -2.9
602,792 + HER17_RS02685 0.62 -2.4
602,793 - HER17_RS02685 0.63 -2.0
602,795 + HER17_RS02685 0.63 -2.3
602,795 + HER17_RS02685 0.63 -1.4
602,795 + HER17_RS02685 0.63 -2.5
602,795 + HER17_RS02685 0.63 -1.7
602,796 - HER17_RS02685 0.63 -2.9
602,796 - HER17_RS02685 0.63 -2.3
602,796 - HER17_RS02685 0.63 -2.3
602,945 - HER17_RS02685 0.77 -2.2
602,978 + HER17_RS02685 0.81 -2.0
602,978 + HER17_RS02685 0.81 -2.0
602,980 + HER17_RS02685 0.81 -1.0
602,981 - HER17_RS02685 0.81 -1.3
602,981 - HER17_RS02685 0.81 -2.7
602,988 + HER17_RS02685 0.82 -2.9
602,989 - HER17_RS02685 0.82 -3.1
602,989 - HER17_RS02685 0.82 -2.2
603,086 + -4.3
603,087 - -3.1
603,141 - -0.7
603,141 - -2.5
603,171 + -0.3
603,172 - -2.5
603,172 - -3.1
603,175 - -2.5
603,199 + -0.3
603,199 + -0.5
603,218 + -0.9
604,407 + -0.1
604,407 + -0.4
604,407 + -0.2
604,417 + -0.3
604,417 + -1.2
604,417 + -0.7
604,454 + -0.3
604,496 + +3.2
604,496 + -0.1

Or see this region's nucleotide sequence