Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01245 and HER17_RS01250 are separated by 9 nucleotides HER17_RS01250 and HER17_RS01255 are separated by 77 nucleotides HER17_RS01255 and HER17_RS01260 are separated by 58 nucleotides HER17_RS01260 and HER17_RS01265 are separated by 114 nucleotides
HER17_RS01245: HER17_RS01245 - amino acid ABC transporter permease, at 286,174 to 286,845
_RS01245
HER17_RS01250: HER17_RS01250 - amino acid ABC transporter ATP-binding protein, at 286,855 to 287,616
_RS01250
HER17_RS01255: HER17_RS01255 - M20 peptidase aminoacylase family protein, at 287,694 to 288,851
_RS01255
HER17_RS01260: HER17_RS01260 - amino acid ABC transporter ATP-binding protein, at 288,910 to 289,638
_RS01260
HER17_RS01265: HER17_RS01265 - amino acid ABC transporter permease, at 289,753 to 290,862
_RS01265
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 286.769 kb on - strand, within HER17_RS01245 at 286.789 kb on + strand at 286.836 kb on - strand at 286.865 kb on + strand at 286.972 kb on - strand, within HER17_RS01250 at 286.995 kb on + strand, within HER17_RS01250 at 286.995 kb on + strand, within HER17_RS01250 at 287.080 kb on + strand, within HER17_RS01250 at 287.080 kb on + strand, within HER17_RS01250 at 287.108 kb on + strand, within HER17_RS01250 at 287.119 kb on + strand, within HER17_RS01250 at 287.120 kb on - strand, within HER17_RS01250 at 287.120 kb on - strand, within HER17_RS01250 at 287.121 kb on + strand, within HER17_RS01250 at 287.121 kb on + strand, within HER17_RS01250 at 287.122 kb on - strand, within HER17_RS01250 at 287.130 kb on + strand, within HER17_RS01250 at 287.301 kb on + strand, within HER17_RS01250 at 287.301 kb on + strand, within HER17_RS01250 at 287.301 kb on + strand, within HER17_RS01250 at 287.302 kb on - strand, within HER17_RS01250 at 287.379 kb on - strand, within HER17_RS01250 at 287.535 kb on + strand, within HER17_RS01250 at 287.535 kb on + strand, within HER17_RS01250 at 287.535 kb on + strand, within HER17_RS01250 at 287.536 kb on - strand, within HER17_RS01250 at 287.605 kb on + strand at 287.605 kb on + strand at 287.610 kb on + strand at 287.611 kb on - strand at 287.611 kb on - strand at 287.614 kb on + strand at 287.615 kb on - strand at 287.621 kb on + strand at 287.621 kb on + strand at 287.621 kb on + strand at 287.621 kb on + strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.629 kb on + strand at 287.629 kb on + strand at 287.629 kb on + strand at 287.630 kb on - strand at 287.630 kb on - strand at 287.630 kb on - strand at 287.630 kb on - strand at 287.689 kb on + strand at 287.689 kb on + strand at 287.689 kb on + strand at 287.689 kb on + strand at 287.690 kb on - strand at 287.733 kb on - strand at 287.733 kb on - strand at 287.957 kb on - strand, within HER17_RS01255 at 287.964 kb on - strand, within HER17_RS01255 at 288.130 kb on + strand, within HER17_RS01255 at 288.130 kb on + strand, within HER17_RS01255 at 288.340 kb on + strand, within HER17_RS01255 at 288.340 kb on + strand, within HER17_RS01255 at 288.340 kb on + strand, within HER17_RS01255 at 288.341 kb on - strand, within HER17_RS01255 at 288.341 kb on - strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.407 kb on + strand, within HER17_RS01255 at 288.407 kb on + strand, within HER17_RS01255 at 288.407 kb on + strand, within HER17_RS01255 at 288.408 kb on - strand, within HER17_RS01255 at 288.408 kb on - strand, within HER17_RS01255 at 288.408 kb on - strand, within HER17_RS01255 at 288.444 kb on + strand, within HER17_RS01255 at 288.444 kb on + strand, within HER17_RS01255 at 288.445 kb on - strand, within HER17_RS01255 at 288.445 kb on - strand, within HER17_RS01255 at 288.491 kb on - strand, within HER17_RS01255 at 288.491 kb on - strand, within HER17_RS01255 at 288.491 kb on - strand, within HER17_RS01255 at 288.518 kb on - strand, within HER17_RS01255 at 288.690 kb on + strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.711 kb on - strand, within HER17_RS01255 at 288.801 kb on + strand at 288.807 kb on + strand at 288.807 kb on + strand at 288.808 kb on - strand at 288.829 kb on + strand at 288.830 kb on - strand at 289.123 kb on - strand, within HER17_RS01260 at 289.246 kb on - strand, within HER17_RS01260 at 289.281 kb on - strand, within HER17_RS01260 at 289.448 kb on - strand, within HER17_RS01260 at 289.467 kb on + strand, within HER17_RS01260 at 289.585 kb on - strand at 289.607 kb on + strand at 289.607 kb on + strand at 289.653 kb on + strand at 289.683 kb on + strand at 289.763 kb on + strand at 289.764 kb on - strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.845 kb on - strand at 289.845 kb on - strand at 289.845 kb on - strand at 289.845 kb on - strand at 289.848 kb on + strand at 289.848 kb on + strand at 289.848 kb on + strand at 289.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 286,769 - HER17_RS01245 0.89 -0.2 286,789 + -0.4 286,836 - -0.1 286,865 + +0.6 286,972 - HER17_RS01250 0.15 +0.2 286,995 + HER17_RS01250 0.18 -0.7 286,995 + HER17_RS01250 0.18 +0.0 287,080 + HER17_RS01250 0.30 -0.2 287,080 + HER17_RS01250 0.30 -0.4 287,108 + HER17_RS01250 0.33 -0.3 287,119 + HER17_RS01250 0.35 +0.6 287,120 - HER17_RS01250 0.35 -0.2 287,120 - HER17_RS01250 0.35 +0.5 287,121 + HER17_RS01250 0.35 -0.3 287,121 + HER17_RS01250 0.35 +0.8 287,122 - HER17_RS01250 0.35 +0.1 287,130 + HER17_RS01250 0.36 -0.3 287,301 + HER17_RS01250 0.59 -0.6 287,301 + HER17_RS01250 0.59 +0.8 287,301 + HER17_RS01250 0.59 -0.3 287,302 - HER17_RS01250 0.59 -0.8 287,379 - HER17_RS01250 0.69 +0.6 287,535 + HER17_RS01250 0.89 -0.5 287,535 + HER17_RS01250 0.89 +0.2 287,535 + HER17_RS01250 0.89 +0.1 287,536 - HER17_RS01250 0.89 +0.6 287,605 + +0.3 287,605 + +0.6 287,610 + -1.3 287,611 - -0.3 287,611 - +0.5 287,614 + +0.3 287,615 - +0.3 287,621 + -0.3 287,621 + +0.1 287,621 + -0.2 287,621 + -1.0 287,622 - -0.1 287,622 - +1.0 287,622 - -0.1 287,622 - +0.5 287,622 - +0.3 287,625 + -0.0 287,625 + +1.1 287,625 + +0.2 287,625 + +0.2 287,625 + +0.1 287,625 + -0.5 287,625 + +0.6 287,626 - -0.3 287,626 - +0.1 287,626 - -0.1 287,626 - +0.1 287,626 - -0.3 287,626 - +1.6 287,626 - +0.4 287,626 - -0.5 287,626 - +0.4 287,629 + +0.2 287,629 + +0.1 287,629 + -0.6 287,630 - -0.3 287,630 - -0.5 287,630 - +0.3 287,630 - -0.2 287,689 + +0.3 287,689 + +0.1 287,689 + +0.1 287,689 + +1.3 287,690 - +0.1 287,733 - -0.7 287,733 - +2.1 287,957 - HER17_RS01255 0.23 +2.3 287,964 - HER17_RS01255 0.23 +0.9 288,130 + HER17_RS01255 0.38 +0.6 288,130 + HER17_RS01255 0.38 +0.3 288,340 + HER17_RS01255 0.56 -2.6 288,340 + HER17_RS01255 0.56 +0.7 288,340 + HER17_RS01255 0.56 -0.2 288,341 - HER17_RS01255 0.56 -0.1 288,341 - HER17_RS01255 0.56 -0.5 288,403 + HER17_RS01255 0.61 +0.2 288,403 + HER17_RS01255 0.61 +0.4 288,403 + HER17_RS01255 0.61 -0.0 288,403 + HER17_RS01255 0.61 -1.6 288,403 + HER17_RS01255 0.61 -0.3 288,403 + HER17_RS01255 0.61 -0.0 288,403 + HER17_RS01255 0.61 -0.2 288,407 + HER17_RS01255 0.62 -0.0 288,407 + HER17_RS01255 0.62 -0.6 288,407 + HER17_RS01255 0.62 +0.3 288,408 - HER17_RS01255 0.62 -0.3 288,408 - HER17_RS01255 0.62 -0.2 288,408 - HER17_RS01255 0.62 +3.3 288,444 + HER17_RS01255 0.65 +0.8 288,444 + HER17_RS01255 0.65 +0.2 288,445 - HER17_RS01255 0.65 -0.8 288,445 - HER17_RS01255 0.65 +1.0 288,491 - HER17_RS01255 0.69 +0.2 288,491 - HER17_RS01255 0.69 +0.4 288,491 - HER17_RS01255 0.69 +0.0 288,518 - HER17_RS01255 0.71 +1.0 288,690 + HER17_RS01255 0.86 +0.4 288,691 - HER17_RS01255 0.86 -0.0 288,691 - HER17_RS01255 0.86 -0.3 288,691 - HER17_RS01255 0.86 -0.3 288,691 - HER17_RS01255 0.86 -0.3 288,691 - HER17_RS01255 0.86 +0.4 288,691 - HER17_RS01255 0.86 +0.3 288,711 - HER17_RS01255 0.88 +1.0 288,801 + -0.1 288,807 + +0.6 288,807 + +0.9 288,808 - +0.3 288,829 + +0.9 288,830 - +1.0 289,123 - HER17_RS01260 0.29 -0.2 289,246 - HER17_RS01260 0.46 +1.3 289,281 - HER17_RS01260 0.51 -0.3 289,448 - HER17_RS01260 0.74 -0.4 289,467 + HER17_RS01260 0.76 -0.4 289,585 - +0.6 289,607 + +0.4 289,607 + +0.5 289,653 + +0.2 289,683 + +0.8 289,763 + -0.6 289,764 - -0.1 289,844 + +0.1 289,844 + -0.3 289,844 + -0.1 289,844 + +0.6 289,844 + +0.3 289,845 - +0.1 289,845 - -0.3 289,845 - -0.2 289,845 - -0.9 289,848 + -0.2 289,848 + +0.5 289,848 + -0.1 289,848 + +0.6
Or see this region's nucleotide sequence