Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00860 and HER17_RS00865 are separated by 88 nucleotides HER17_RS00865 and HER17_RS00870 are separated by 308 nucleotides
HER17_RS00860: HER17_RS00860 - cell division protein FtsN, at 199,539 to 200,414
_RS00860
HER17_RS00865: HER17_RS00865 - DNA-binding transcriptional regulator CytR, at 200,503 to 201,546
_RS00865
HER17_RS00870: HER17_RS00870 - primosomal protein N', at 201,855 to 204,053
_RS00870
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.512 kb on + strand at 199.514 kb on + strand at 199.514 kb on + strand at 199.514 kb on + strand at 199.514 kb on + strand at 199.515 kb on - strand at 199.515 kb on - strand at 199.515 kb on - strand at 199.515 kb on - strand at 199.515 kb on - strand at 199.515 kb on - strand at 199.515 kb on - strand at 199.562 kb on + strand at 199.563 kb on - strand at 199.604 kb on + strand at 199.604 kb on + strand at 199.605 kb on - strand at 199.625 kb on + strand at 199.627 kb on + strand, within HER17_RS00860 at 199.628 kb on - strand, within HER17_RS00860 at 199.628 kb on - strand, within HER17_RS00860 at 199.628 kb on - strand, within HER17_RS00860 at 199.640 kb on + strand, within HER17_RS00860 at 199.640 kb on + strand, within HER17_RS00860 at 199.640 kb on + strand, within HER17_RS00860 at 199.640 kb on + strand, within HER17_RS00860 at 199.641 kb on - strand, within HER17_RS00860 at 199.641 kb on - strand, within HER17_RS00860 at 199.641 kb on - strand, within HER17_RS00860 at 199.644 kb on - strand, within HER17_RS00860 at 199.861 kb on - strand, within HER17_RS00860 at 199.953 kb on - strand, within HER17_RS00860 at 199.953 kb on - strand, within HER17_RS00860 at 199.992 kb on - strand, within HER17_RS00860 at 199.993 kb on + strand, within HER17_RS00860 at 199.994 kb on - strand, within HER17_RS00860 at 200.030 kb on + strand, within HER17_RS00860 at 200.399 kb on - strand at 200.399 kb on - strand at 200.437 kb on - strand at 200.441 kb on - strand at 200.441 kb on - strand at 200.441 kb on - strand at 200.445 kb on - strand at 200.445 kb on - strand at 200.447 kb on + strand at 200.447 kb on + strand at 200.449 kb on + strand at 200.449 kb on + strand at 200.449 kb on + strand at 200.449 kb on + strand at 200.449 kb on + strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.481 kb on + strand at 200.482 kb on - strand at 200.504 kb on + strand at 200.504 kb on + strand at 200.505 kb on - strand at 200.522 kb on + strand at 200.523 kb on - strand at 200.523 kb on - strand at 200.548 kb on + strand at 200.549 kb on - strand at 200.549 kb on - strand at 200.596 kb on - strand at 200.612 kb on - strand, within HER17_RS00865 at 200.612 kb on - strand, within HER17_RS00865 at 200.612 kb on - strand, within HER17_RS00865 at 200.617 kb on + strand, within HER17_RS00865 at 200.617 kb on + strand, within HER17_RS00865 at 200.617 kb on + strand, within HER17_RS00865 at 200.618 kb on - strand, within HER17_RS00865 at 200.618 kb on - strand, within HER17_RS00865 at 200.791 kb on - strand, within HER17_RS00865 at 200.861 kb on + strand, within HER17_RS00865 at 200.861 kb on + strand, within HER17_RS00865 at 200.885 kb on + strand, within HER17_RS00865 at 200.885 kb on + strand, within HER17_RS00865 at 200.886 kb on - strand, within HER17_RS00865 at 200.930 kb on + strand, within HER17_RS00865 at 200.945 kb on + strand, within HER17_RS00865 at 201.009 kb on - strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.014 kb on + strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.015 kb on - strand, within HER17_RS00865 at 201.019 kb on + strand, within HER17_RS00865 at 201.020 kb on - strand, within HER17_RS00865 at 201.020 kb on - strand, within HER17_RS00865 at 201.114 kb on + strand, within HER17_RS00865 at 201.115 kb on - strand, within HER17_RS00865 at 201.115 kb on - strand, within HER17_RS00865 at 201.160 kb on + strand, within HER17_RS00865 at 201.161 kb on - strand, within HER17_RS00865 at 201.186 kb on + strand, within HER17_RS00865 at 201.186 kb on + strand, within HER17_RS00865 at 201.190 kb on - strand, within HER17_RS00865 at 201.190 kb on - strand, within HER17_RS00865 at 201.305 kb on + strand, within HER17_RS00865 at 201.306 kb on - strand, within HER17_RS00865 at 201.390 kb on - strand, within HER17_RS00865 at 201.424 kb on - strand, within HER17_RS00865 at 201.424 kb on - strand, within HER17_RS00865 at 201.470 kb on - strand at 201.571 kb on - strand at 201.571 kb on - strand at 201.571 kb on - strand at 201.616 kb on + strand at 201.617 kb on - strand at 201.617 kb on - strand at 201.622 kb on + strand at 201.668 kb on + strand at 201.668 kb on + strand at 201.668 kb on + strand at 201.668 kb on + strand at 201.669 kb on - strand at 201.669 kb on - strand at 201.669 kb on - strand at 201.669 kb on - strand at 201.669 kb on - strand at 201.669 kb on - strand at 201.669 kb on - strand at 201.676 kb on + strand at 201.676 kb on + strand at 201.676 kb on + strand at 201.677 kb on - strand at 201.677 kb on - strand at 201.690 kb on + strand at 201.691 kb on - strand at 201.691 kb on - strand at 201.691 kb on - strand at 201.691 kb on - strand at 201.714 kb on + strand at 201.715 kb on - strand at 201.736 kb on - strand at 201.843 kb on + strand at 201.843 kb on + strand at 201.843 kb on + strand at 201.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 199,512 + +0.2 199,514 + -2.4 199,514 + +0.7 199,514 + -0.3 199,514 + -0.3 199,515 - -0.5 199,515 - +0.1 199,515 - -0.2 199,515 - +0.6 199,515 - -1.3 199,515 - +0.1 199,515 - +0.4 199,562 + +0.7 199,563 - -0.0 199,604 + -1.0 199,604 + -0.6 199,605 - +0.5 199,625 + -0.2 199,627 + HER17_RS00860 0.10 -0.3 199,628 - HER17_RS00860 0.10 +0.5 199,628 - HER17_RS00860 0.10 -1.0 199,628 - HER17_RS00860 0.10 -1.2 199,640 + HER17_RS00860 0.12 +0.0 199,640 + HER17_RS00860 0.12 +0.5 199,640 + HER17_RS00860 0.12 -0.8 199,640 + HER17_RS00860 0.12 -0.6 199,641 - HER17_RS00860 0.12 -0.1 199,641 - HER17_RS00860 0.12 -1.6 199,641 - HER17_RS00860 0.12 -0.7 199,644 - HER17_RS00860 0.12 -1.4 199,861 - HER17_RS00860 0.37 -0.7 199,953 - HER17_RS00860 0.47 -0.9 199,953 - HER17_RS00860 0.47 +0.4 199,992 - HER17_RS00860 0.52 -0.5 199,993 + HER17_RS00860 0.52 +0.4 199,994 - HER17_RS00860 0.52 +1.0 200,030 + HER17_RS00860 0.56 -2.0 200,399 - -2.1 200,399 - -2.3 200,437 - -0.7 200,441 - -0.1 200,441 - -0.4 200,441 - +0.0 200,445 - +0.2 200,445 - +2.0 200,447 + -1.0 200,447 + +0.0 200,449 + -1.7 200,449 + -2.9 200,449 + -1.6 200,449 + -2.2 200,449 + -2.0 200,450 - +0.7 200,450 - -0.7 200,450 - +0.5 200,450 - -0.1 200,481 + -2.2 200,482 - -0.3 200,504 + +0.6 200,504 + +0.3 200,505 - +0.8 200,522 + -0.3 200,523 - -0.5 200,523 - +0.0 200,548 + +0.2 200,549 - -0.7 200,549 - +0.2 200,596 - +0.3 200,612 - HER17_RS00865 0.10 +0.1 200,612 - HER17_RS00865 0.10 -0.3 200,612 - HER17_RS00865 0.10 +0.5 200,617 + HER17_RS00865 0.11 -0.2 200,617 + HER17_RS00865 0.11 +0.0 200,617 + HER17_RS00865 0.11 +0.2 200,618 - HER17_RS00865 0.11 +1.6 200,618 - HER17_RS00865 0.11 -0.2 200,791 - HER17_RS00865 0.28 +0.3 200,861 + HER17_RS00865 0.34 +0.1 200,861 + HER17_RS00865 0.34 -1.3 200,885 + HER17_RS00865 0.37 -0.3 200,885 + HER17_RS00865 0.37 -0.4 200,886 - HER17_RS00865 0.37 +0.5 200,930 + HER17_RS00865 0.41 -0.5 200,945 + HER17_RS00865 0.42 -0.9 201,009 - HER17_RS00865 0.48 +0.1 201,014 + HER17_RS00865 0.49 +0.0 201,014 + HER17_RS00865 0.49 +0.0 201,014 + HER17_RS00865 0.49 +0.0 201,014 + HER17_RS00865 0.49 -0.1 201,014 + HER17_RS00865 0.49 +0.8 201,014 + HER17_RS00865 0.49 -0.5 201,014 + HER17_RS00865 0.49 +0.9 201,014 + HER17_RS00865 0.49 +0.0 201,015 - HER17_RS00865 0.49 +0.1 201,015 - HER17_RS00865 0.49 -0.5 201,015 - HER17_RS00865 0.49 +0.0 201,015 - HER17_RS00865 0.49 -0.3 201,015 - HER17_RS00865 0.49 -0.4 201,015 - HER17_RS00865 0.49 -0.1 201,015 - HER17_RS00865 0.49 +1.0 201,015 - HER17_RS00865 0.49 -0.3 201,015 - HER17_RS00865 0.49 +0.2 201,019 + HER17_RS00865 0.49 -0.0 201,020 - HER17_RS00865 0.50 -0.4 201,020 - HER17_RS00865 0.50 -0.5 201,114 + HER17_RS00865 0.59 -0.3 201,115 - HER17_RS00865 0.59 +0.4 201,115 - HER17_RS00865 0.59 +0.3 201,160 + HER17_RS00865 0.63 +0.5 201,161 - HER17_RS00865 0.63 -0.6 201,186 + HER17_RS00865 0.65 -0.6 201,186 + HER17_RS00865 0.65 +0.7 201,190 - HER17_RS00865 0.66 +0.3 201,190 - HER17_RS00865 0.66 -0.5 201,305 + HER17_RS00865 0.77 +0.7 201,306 - HER17_RS00865 0.77 -1.3 201,390 - HER17_RS00865 0.85 -0.4 201,424 - HER17_RS00865 0.88 +0.8 201,424 - HER17_RS00865 0.88 +0.1 201,470 - +0.7 201,571 - +1.5 201,571 - -0.4 201,571 - +0.6 201,616 + +0.4 201,617 - +0.5 201,617 - -1.2 201,622 + +0.4 201,668 + +0.7 201,668 + -0.4 201,668 + +1.0 201,668 + +1.5 201,669 - -1.2 201,669 - +0.3 201,669 - -0.5 201,669 - +0.0 201,669 - +0.2 201,669 - +1.0 201,669 - +0.8 201,676 + -0.6 201,676 + +1.8 201,676 + -1.1 201,677 - +0.1 201,677 - +0.3 201,690 + -0.5 201,691 - -0.4 201,691 - +0.2 201,691 - +0.1 201,691 - -0.1 201,714 + +0.2 201,715 - +1.1 201,736 - +0.5 201,843 + +0.4 201,843 + +0.3 201,843 + -0.5 201,844 - +0.4
Or see this region's nucleotide sequence