Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00720 and HER17_RS00725 are separated by 206 nucleotides HER17_RS00725 and HER17_RS00730 are separated by 506 nucleotides
HER17_RS00720: HER17_RS00720 - CDF family cation-efflux transporter FieF, at 169,348 to 170,250
_RS00720
HER17_RS00725: HER17_RS00725 - 6-phosphofructokinase, at 170,457 to 171,419
_RS00725
HER17_RS00730: HER17_RS00730 - LysR family transcriptional regulator, at 171,926 to 172,855
_RS00730
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.532 kb on - strand, within HER17_RS00720 at 169.608 kb on + strand, within HER17_RS00720 at 169.608 kb on + strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.770 kb on + strand, within HER17_RS00720 at 169.771 kb on - strand, within HER17_RS00720 at 169.807 kb on + strand, within HER17_RS00720 at 169.808 kb on - strand, within HER17_RS00720 at 169.913 kb on - strand, within HER17_RS00720 at 169.914 kb on + strand, within HER17_RS00720 at 169.914 kb on + strand, within HER17_RS00720 at 169.914 kb on + strand, within HER17_RS00720 at 169.919 kb on + strand, within HER17_RS00720 at 169.919 kb on + strand, within HER17_RS00720 at 169.919 kb on + strand, within HER17_RS00720 at 169.920 kb on - strand, within HER17_RS00720 at 169.920 kb on - strand, within HER17_RS00720 at 169.922 kb on - strand, within HER17_RS00720 at 169.924 kb on - strand, within HER17_RS00720 at 170.053 kb on - strand, within HER17_RS00720 at 170.159 kb on + strand, within HER17_RS00720 at 170.159 kb on + strand, within HER17_RS00720 at 170.187 kb on + strand at 170.187 kb on + strand at 170.188 kb on - strand at 170.272 kb on - strand at 170.287 kb on + strand at 170.352 kb on + strand at 170.352 kb on + strand at 170.353 kb on - strand at 170.355 kb on + strand at 170.356 kb on - strand at 170.356 kb on - strand at 170.356 kb on - strand at 170.356 kb on - strand at 170.356 kb on - strand at 170.356 kb on - strand at 170.361 kb on - strand at 170.363 kb on + strand at 170.408 kb on + strand at 170.433 kb on - strand at 170.433 kb on - strand at 170.433 kb on - strand at 170.438 kb on + strand at 170.439 kb on - strand at 170.439 kb on - strand at 170.439 kb on - strand at 170.462 kb on + strand at 170.462 kb on + strand at 170.463 kb on - strand at 170.463 kb on - strand at 170.463 kb on - strand at 170.463 kb on - strand at 170.504 kb on + strand at 170.504 kb on + strand at 170.571 kb on + strand, within HER17_RS00725 at 170.571 kb on + strand, within HER17_RS00725 at 170.571 kb on + strand, within HER17_RS00725 at 170.571 kb on + strand, within HER17_RS00725 at 170.572 kb on - strand, within HER17_RS00725 at 170.572 kb on - strand, within HER17_RS00725 at 170.580 kb on + strand, within HER17_RS00725 at 170.592 kb on + strand, within HER17_RS00725 at 170.592 kb on + strand, within HER17_RS00725 at 170.643 kb on - strand, within HER17_RS00725 at 170.654 kb on + strand, within HER17_RS00725 at 170.775 kb on + strand, within HER17_RS00725 at 170.776 kb on - strand, within HER17_RS00725 at 170.776 kb on - strand, within HER17_RS00725 at 170.776 kb on - strand, within HER17_RS00725 at 170.778 kb on - strand, within HER17_RS00725 at 170.875 kb on - strand, within HER17_RS00725 at 170.946 kb on - strand, within HER17_RS00725 at 170.946 kb on - strand, within HER17_RS00725 at 171.156 kb on + strand, within HER17_RS00725 at 171.156 kb on + strand, within HER17_RS00725 at 171.157 kb on - strand, within HER17_RS00725 at 171.157 kb on - strand, within HER17_RS00725 at 171.159 kb on - strand, within HER17_RS00725 at 171.159 kb on - strand, within HER17_RS00725 at 171.196 kb on + strand, within HER17_RS00725 at 171.206 kb on + strand, within HER17_RS00725 at 171.234 kb on + strand, within HER17_RS00725 at 171.234 kb on + strand, within HER17_RS00725 at 171.243 kb on - strand, within HER17_RS00725 at 171.267 kb on + strand, within HER17_RS00725 at 171.284 kb on - strand, within HER17_RS00725 at 171.399 kb on - strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.452 kb on + strand at 171.452 kb on + strand at 171.452 kb on + strand at 171.452 kb on + strand at 171.452 kb on + strand at 171.453 kb on - strand at 171.453 kb on - strand at 171.453 kb on - strand at 171.453 kb on - strand at 171.453 kb on - strand at 171.516 kb on - strand at 171.693 kb on + strand at 171.693 kb on + strand at 171.694 kb on - strand at 171.704 kb on + strand at 171.728 kb on + strand at 171.728 kb on + strand at 171.729 kb on - strand at 171.740 kb on + strand at 171.744 kb on + strand at 171.745 kb on - strand at 171.745 kb on - strand at 171.770 kb on + strand at 171.770 kb on + strand at 171.770 kb on + strand at 171.770 kb on + strand at 171.771 kb on - strand at 171.771 kb on - strand at 171.771 kb on - strand at 171.771 kb on - strand at 171.783 kb on + strand at 171.783 kb on + strand at 171.784 kb on - strand at 171.784 kb on - strand at 171.793 kb on - strand at 171.822 kb on + strand at 171.822 kb on + strand at 171.822 kb on + strand at 171.822 kb on + strand at 171.822 kb on + strand at 171.823 kb on - strand at 171.825 kb on - strand at 171.825 kb on - strand at 171.839 kb on + strand at 171.840 kb on - strand at 171.840 kb on - strand at 171.882 kb on - strand at 171.882 kb on - strand at 171.958 kb on + strand at 171.959 kb on - strand at 172.243 kb on + strand, within HER17_RS00730 at 172.244 kb on - strand, within HER17_RS00730 at 172.244 kb on - strand, within HER17_RS00730
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 169,532 - HER17_RS00720 0.20 -0.2 169,608 + HER17_RS00720 0.29 -0.0 169,608 + HER17_RS00720 0.29 -0.2 169,609 - HER17_RS00720 0.29 -0.6 169,609 - HER17_RS00720 0.29 +0.0 169,609 - HER17_RS00720 0.29 +0.7 169,609 - HER17_RS00720 0.29 -0.2 169,609 - HER17_RS00720 0.29 +0.3 169,770 + HER17_RS00720 0.47 -0.8 169,771 - HER17_RS00720 0.47 -0.2 169,807 + HER17_RS00720 0.51 -0.0 169,808 - HER17_RS00720 0.51 +0.2 169,913 - HER17_RS00720 0.63 +0.0 169,914 + HER17_RS00720 0.63 +0.1 169,914 + HER17_RS00720 0.63 -1.3 169,914 + HER17_RS00720 0.63 +0.6 169,919 + HER17_RS00720 0.63 -0.6 169,919 + HER17_RS00720 0.63 +0.8 169,919 + HER17_RS00720 0.63 +0.5 169,920 - HER17_RS00720 0.63 -0.2 169,920 - HER17_RS00720 0.63 +1.2 169,922 - HER17_RS00720 0.64 -0.7 169,924 - HER17_RS00720 0.64 +1.4 170,053 - HER17_RS00720 0.78 -0.3 170,159 + HER17_RS00720 0.90 +0.8 170,159 + HER17_RS00720 0.90 -0.4 170,187 + -0.1 170,187 + +1.0 170,188 - -0.8 170,272 - -0.0 170,287 + -0.6 170,352 + +0.5 170,352 + -0.2 170,353 - +0.2 170,355 + -0.3 170,356 - -0.6 170,356 - -0.0 170,356 - -0.1 170,356 - -1.7 170,356 - -0.0 170,356 - +0.4 170,361 - -0.6 170,363 + +0.8 170,408 + -0.8 170,433 - -0.3 170,433 - -2.3 170,433 - +0.5 170,438 + +0.7 170,439 - -2.1 170,439 - +0.5 170,439 - -0.3 170,462 + -0.4 170,462 + -0.4 170,463 - -1.7 170,463 - -0.3 170,463 - -0.7 170,463 - -1.0 170,504 + -0.5 170,504 + -1.7 170,571 + HER17_RS00725 0.12 -1.0 170,571 + HER17_RS00725 0.12 -1.3 170,571 + HER17_RS00725 0.12 -0.9 170,571 + HER17_RS00725 0.12 +0.5 170,572 - HER17_RS00725 0.12 -2.0 170,572 - HER17_RS00725 0.12 -0.2 170,580 + HER17_RS00725 0.13 +0.4 170,592 + HER17_RS00725 0.14 -0.8 170,592 + HER17_RS00725 0.14 -1.5 170,643 - HER17_RS00725 0.19 -0.8 170,654 + HER17_RS00725 0.20 -1.4 170,775 + HER17_RS00725 0.33 -0.7 170,776 - HER17_RS00725 0.33 -0.5 170,776 - HER17_RS00725 0.33 -2.4 170,776 - HER17_RS00725 0.33 -1.1 170,778 - HER17_RS00725 0.33 -0.9 170,875 - HER17_RS00725 0.43 -0.8 170,946 - HER17_RS00725 0.51 +1.0 170,946 - HER17_RS00725 0.51 -0.8 171,156 + HER17_RS00725 0.73 -0.7 171,156 + HER17_RS00725 0.73 -1.8 171,157 - HER17_RS00725 0.73 -1.3 171,157 - HER17_RS00725 0.73 -2.4 171,159 - HER17_RS00725 0.73 -0.1 171,159 - HER17_RS00725 0.73 -2.4 171,196 + HER17_RS00725 0.77 -1.5 171,206 + HER17_RS00725 0.78 -0.3 171,234 + HER17_RS00725 0.81 -1.4 171,234 + HER17_RS00725 0.81 -1.1 171,243 - HER17_RS00725 0.82 -1.3 171,267 + HER17_RS00725 0.84 -1.8 171,284 - HER17_RS00725 0.86 -0.5 171,399 - -2.4 171,417 + -0.4 171,417 + +0.4 171,417 + +0.4 171,418 - -0.4 171,418 - -0.1 171,418 - +0.7 171,452 + -0.5 171,452 + +0.7 171,452 + -0.3 171,452 + -0.4 171,452 + +0.6 171,453 - +1.2 171,453 - -0.9 171,453 - +0.2 171,453 - -1.3 171,453 - -1.0 171,516 - -0.3 171,693 + -1.0 171,693 + +0.7 171,694 - -0.8 171,704 + -0.0 171,728 + -0.0 171,728 + -1.2 171,729 - -0.9 171,740 + -0.8 171,744 + -0.3 171,745 - -0.8 171,745 - -1.1 171,770 + -0.4 171,770 + +0.4 171,770 + -0.1 171,770 + +0.2 171,771 - -0.6 171,771 - +0.7 171,771 - +0.3 171,771 - +0.1 171,783 + +1.5 171,783 + +0.4 171,784 - +0.0 171,784 - -0.9 171,793 - +0.0 171,822 + -0.1 171,822 + -0.3 171,822 + -2.1 171,822 + +0.2 171,822 + +0.4 171,823 - -0.1 171,825 - +0.1 171,825 - +1.9 171,839 + +0.3 171,840 - -0.4 171,840 - -0.2 171,882 - -0.2 171,882 - +0.7 171,958 + +0.2 171,959 - +0.4 172,243 + HER17_RS00730 0.34 +0.8 172,244 - HER17_RS00730 0.34 +0.9 172,244 - HER17_RS00730 0.34 +0.2
Or see this region's nucleotide sequence