Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00235

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00225 and HER17_RS00230 are separated by 13 nucleotidesHER17_RS00230 and HER17_RS00235 are separated by 13 nucleotidesHER17_RS00235 and HER17_RS00240 overlap by 4 nucleotides HER17_RS00225: HER17_RS00225 - dipeptide ABC transporter permease DppB, at 51,047 to 52,066 _RS00225 HER17_RS00230: HER17_RS00230 - dipeptide ABC transporter permease DppC, at 52,080 to 52,982 _RS00230 HER17_RS00235: HER17_RS00235 - dipeptide ABC transporter ATP-binding protein, at 52,996 to 53,976 _RS00235 HER17_RS00240: HER17_RS00240 - ABC transporter ATP-binding protein, at 53,973 to 54,983 _RS00240 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 52.028 kb on + strandat 52.028 kb on + strandat 52.064 kb on + strandat 52.076 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.106 kb on - strandat 52.106 kb on - strandat 52.106 kb on - strandat 52.106 kb on - strandat 52.109 kb on + strandat 52.109 kb on + strandat 52.110 kb on - strandat 52.135 kb on + strandat 52.153 kb on - strandat 52.157 kb on + strandat 52.158 kb on - strandat 52.158 kb on - strandat 52.163 kb on + strandat 52.191 kb on + strand, within HER17_RS00230at 52.191 kb on + strand, within HER17_RS00230at 52.191 kb on + strand, within HER17_RS00230at 52.191 kb on + strand, within HER17_RS00230at 52.192 kb on - strand, within HER17_RS00230at 52.192 kb on - strand, within HER17_RS00230at 52.316 kb on + strand, within HER17_RS00230at 52.317 kb on - strand, within HER17_RS00230at 52.365 kb on + strand, within HER17_RS00230at 52.365 kb on + strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.452 kb on + strand, within HER17_RS00230at 52.605 kb on + strand, within HER17_RS00230at 52.605 kb on + strand, within HER17_RS00230at 52.606 kb on - strand, within HER17_RS00230at 52.606 kb on - strand, within HER17_RS00230at 52.910 kb on - strandat 52.918 kb on + strandat 52.981 kb on - strandat 52.981 kb on - strandat 52.983 kb on + strandat 52.984 kb on - strandat 52.984 kb on - strandat 52.984 kb on - strandat 52.989 kb on + strandat 53.012 kb on + strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.017 kb on - strandat 53.077 kb on + strandat 53.078 kb on - strandat 53.171 kb on - strand, within HER17_RS00235at 53.248 kb on - strand, within HER17_RS00235at 53.252 kb on + strand, within HER17_RS00235at 53.252 kb on + strand, within HER17_RS00235at 53.311 kb on + strand, within HER17_RS00235at 53.311 kb on + strand, within HER17_RS00235at 53.312 kb on - strand, within HER17_RS00235at 53.626 kb on - strand, within HER17_RS00235at 53.626 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.741 kb on - strand, within HER17_RS00235at 53.742 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.785 kb on - strand, within HER17_RS00235at 53.827 kb on + strand, within HER17_RS00235at 53.828 kb on - strand, within HER17_RS00235at 53.828 kb on - strand, within HER17_RS00235at 53.852 kb on + strand, within HER17_RS00235at 53.870 kb on - strand, within HER17_RS00235at 53.940 kb on + strandat 53.941 kb on - strandat 53.941 kb on - strandat 53.972 kb on + strandat 53.972 kb on + strandat 53.973 kb on - strandat 54.003 kb on + strandat 54.003 kb on + strandat 54.003 kb on + strandat 54.037 kb on - strandat 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.213 kb on + strand, within HER17_RS00240at 54.214 kb on - strand, within HER17_RS00240at 54.297 kb on + strand, within HER17_RS00240at 54.318 kb on - strand, within HER17_RS00240at 54.318 kb on - strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.452 kb on + strand, within HER17_RS00240at 54.452 kb on + strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.480 kb on - strand, within HER17_RS00240at 54.615 kb on + strand, within HER17_RS00240at 54.615 kb on + strand, within HER17_RS00240at 54.616 kb on - strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.654 kb on - strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.707 kb on + strand, within HER17_RS00240at 54.743 kb on + strand, within HER17_RS00240at 54.743 kb on + strand, within HER17_RS00240at 54.755 kb on - strand, within HER17_RS00240at 54.755 kb on - strand, within HER17_RS00240at 54.824 kb on + strand, within HER17_RS00240at 54.911 kb on + strandat 54.919 kb on - strandat 54.919 kb on - strandat 54.968 kb on + strandat 54.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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52,028 + +0.0
52,028 + +0.4
52,064 + +1.6
52,076 + -0.6
52,105 + +0.3
52,105 + -0.4
52,105 + -0.0
52,105 + +0.4
52,105 + -0.1
52,106 - +0.2
52,106 - -1.0
52,106 - -0.0
52,106 - +0.5
52,109 + -0.4
52,109 + +1.6
52,110 - +0.2
52,135 + -0.1
52,153 - -0.4
52,157 + -0.8
52,158 - -1.0
52,158 - +1.0
52,163 + -1.0
52,191 + HER17_RS00230 0.12 -0.4
52,191 + HER17_RS00230 0.12 -1.3
52,191 + HER17_RS00230 0.12 +0.0
52,191 + HER17_RS00230 0.12 +0.6
52,192 - HER17_RS00230 0.12 +0.7
52,192 - HER17_RS00230 0.12 +0.3
52,316 + HER17_RS00230 0.26 -0.2
52,317 - HER17_RS00230 0.26 +0.5
52,365 + HER17_RS00230 0.32 -0.0
52,365 + HER17_RS00230 0.32 -0.1
52,366 - HER17_RS00230 0.32 +0.1
52,366 - HER17_RS00230 0.32 -0.9
52,366 - HER17_RS00230 0.32 -0.3
52,366 - HER17_RS00230 0.32 +0.2
52,366 - HER17_RS00230 0.32 +0.2
52,452 + HER17_RS00230 0.41 +0.3
52,605 + HER17_RS00230 0.58 -1.3
52,605 + HER17_RS00230 0.58 +0.4
52,606 - HER17_RS00230 0.58 +1.2
52,606 - HER17_RS00230 0.58 +0.0
52,910 - -0.0
52,918 + -0.7
52,981 - -0.2
52,981 - +0.0
52,983 + +0.3
52,984 - +0.8
52,984 - +0.4
52,984 - -0.1
52,989 + -1.3
53,012 + +1.4
53,013 - -2.0
53,013 - -0.0
53,013 - +0.5
53,013 - +0.4
53,013 - -1.2
53,013 - -1.5
53,013 - +1.3
53,017 - +0.2
53,077 + -0.3
53,078 - +0.4
53,171 - HER17_RS00235 0.18 -0.3
53,248 - HER17_RS00235 0.26 +0.8
53,252 + HER17_RS00235 0.26 -0.7
53,252 + HER17_RS00235 0.26 +0.3
53,311 + HER17_RS00235 0.32 +0.6
53,311 + HER17_RS00235 0.32 +0.1
53,312 - HER17_RS00235 0.32 +0.4
53,626 - HER17_RS00235 0.64 -0.6
53,626 - HER17_RS00235 0.64 +0.8
53,678 - HER17_RS00235 0.70 -0.4
53,678 - HER17_RS00235 0.70 -0.2
53,678 - HER17_RS00235 0.70 -0.1
53,741 - HER17_RS00235 0.76 -0.4
53,742 + HER17_RS00235 0.76 -1.2
53,784 + HER17_RS00235 0.80 -0.7
53,784 + HER17_RS00235 0.80 +0.2
53,784 + HER17_RS00235 0.80 +0.6
53,784 + HER17_RS00235 0.80 -0.1
53,785 - HER17_RS00235 0.80 +0.6
53,827 + HER17_RS00235 0.85 +0.0
53,828 - HER17_RS00235 0.85 -0.3
53,828 - HER17_RS00235 0.85 +0.5
53,852 + HER17_RS00235 0.87 -0.1
53,870 - HER17_RS00235 0.89 +0.1
53,940 + +0.0
53,941 - +0.3
53,941 - -0.2
53,972 + -0.1
53,972 + +0.5
53,973 - -0.1
54,003 + -0.4
54,003 + -2.3
54,003 + +0.2
54,037 - -0.0
54,210 + HER17_RS00240 0.23 +0.5
54,210 + HER17_RS00240 0.23 +0.8
54,210 + HER17_RS00240 0.23 -1.1
54,210 + HER17_RS00240 0.23 +0.6
54,211 - HER17_RS00240 0.24 +0.5
54,211 - HER17_RS00240 0.24 -0.3
54,211 - HER17_RS00240 0.24 -1.3
54,213 + HER17_RS00240 0.24 -0.0
54,214 - HER17_RS00240 0.24 -0.5
54,297 + HER17_RS00240 0.32 -0.2
54,318 - HER17_RS00240 0.34 -0.1
54,318 - HER17_RS00240 0.34 -0.0
54,435 + HER17_RS00240 0.46 -0.7
54,435 + HER17_RS00240 0.46 -0.0
54,435 + HER17_RS00240 0.46 -0.6
54,435 + HER17_RS00240 0.46 +0.5
54,436 - HER17_RS00240 0.46 -0.2
54,436 - HER17_RS00240 0.46 -0.0
54,436 - HER17_RS00240 0.46 -0.0
54,452 + HER17_RS00240 0.47 +0.6
54,452 + HER17_RS00240 0.47 -0.2
54,453 - HER17_RS00240 0.47 +1.0
54,453 - HER17_RS00240 0.47 -0.0
54,453 - HER17_RS00240 0.47 +0.2
54,453 - HER17_RS00240 0.47 -0.7
54,480 - HER17_RS00240 0.50 -0.3
54,615 + HER17_RS00240 0.64 +0.9
54,615 + HER17_RS00240 0.64 +0.3
54,616 - HER17_RS00240 0.64 +0.5
54,653 + HER17_RS00240 0.67 -1.0
54,653 + HER17_RS00240 0.67 +0.4
54,653 + HER17_RS00240 0.67 -0.7
54,654 - HER17_RS00240 0.67 +0.6
54,678 + HER17_RS00240 0.70 -0.1
54,678 + HER17_RS00240 0.70 -0.6
54,678 + HER17_RS00240 0.70 +0.1
54,679 - HER17_RS00240 0.70 -0.4
54,679 - HER17_RS00240 0.70 +0.4
54,679 - HER17_RS00240 0.70 +0.4
54,679 - HER17_RS00240 0.70 +0.2
54,679 - HER17_RS00240 0.70 +0.9
54,707 + HER17_RS00240 0.73 +0.6
54,743 + HER17_RS00240 0.76 -1.0
54,743 + HER17_RS00240 0.76 +0.1
54,755 - HER17_RS00240 0.77 +0.1
54,755 - HER17_RS00240 0.77 +0.4
54,824 + HER17_RS00240 0.84 -0.3
54,911 + +0.5
54,919 - +0.6
54,919 - -1.2
54,968 + -0.9
54,969 - +0.4

Or see this region's nucleotide sequence