Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00230

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00225 and HER17_RS00230 are separated by 13 nucleotidesHER17_RS00230 and HER17_RS00235 are separated by 13 nucleotidesHER17_RS00235 and HER17_RS00240 overlap by 4 nucleotides HER17_RS00225: HER17_RS00225 - dipeptide ABC transporter permease DppB, at 51,047 to 52,066 _RS00225 HER17_RS00230: HER17_RS00230 - dipeptide ABC transporter permease DppC, at 52,080 to 52,982 _RS00230 HER17_RS00235: HER17_RS00235 - dipeptide ABC transporter ATP-binding protein, at 52,996 to 53,976 _RS00235 HER17_RS00240: HER17_RS00240 - ABC transporter ATP-binding protein, at 53,973 to 54,983 _RS00240 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 51.094 kb on + strandat 51.095 kb on - strandat 51.100 kb on + strandat 51.108 kb on + strandat 51.108 kb on + strandat 51.109 kb on - strandat 51.111 kb on + strandat 51.175 kb on + strand, within HER17_RS00225at 51.242 kb on + strand, within HER17_RS00225at 51.242 kb on + strand, within HER17_RS00225at 51.243 kb on - strand, within HER17_RS00225at 51.251 kb on + strand, within HER17_RS00225at 51.251 kb on + strand, within HER17_RS00225at 51.251 kb on + strand, within HER17_RS00225at 51.251 kb on + strand, within HER17_RS00225at 51.251 kb on + strand, within HER17_RS00225at 51.254 kb on - strand, within HER17_RS00225at 51.254 kb on - strand, within HER17_RS00225at 51.439 kb on + strand, within HER17_RS00225at 51.439 kb on + strand, within HER17_RS00225at 51.439 kb on + strand, within HER17_RS00225at 51.440 kb on - strand, within HER17_RS00225at 51.440 kb on - strand, within HER17_RS00225at 51.440 kb on - strand, within HER17_RS00225at 51.440 kb on - strand, within HER17_RS00225at 51.478 kb on + strand, within HER17_RS00225at 51.478 kb on + strand, within HER17_RS00225at 51.479 kb on - strand, within HER17_RS00225at 51.479 kb on - strand, within HER17_RS00225at 51.505 kb on + strand, within HER17_RS00225at 51.506 kb on - strand, within HER17_RS00225at 51.506 kb on - strand, within HER17_RS00225at 51.551 kb on - strand, within HER17_RS00225at 51.598 kb on + strand, within HER17_RS00225at 51.599 kb on - strand, within HER17_RS00225at 51.615 kb on + strand, within HER17_RS00225at 51.616 kb on - strand, within HER17_RS00225at 51.616 kb on - strand, within HER17_RS00225at 51.712 kb on + strand, within HER17_RS00225at 51.713 kb on - strand, within HER17_RS00225at 51.752 kb on + strand, within HER17_RS00225at 51.753 kb on - strand, within HER17_RS00225at 51.753 kb on - strand, within HER17_RS00225at 51.753 kb on - strand, within HER17_RS00225at 51.781 kb on - strand, within HER17_RS00225at 51.817 kb on + strand, within HER17_RS00225at 51.975 kb on + strandat 52.028 kb on + strandat 52.028 kb on + strandat 52.064 kb on + strandat 52.076 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.105 kb on + strandat 52.106 kb on - strandat 52.106 kb on - strandat 52.106 kb on - strandat 52.106 kb on - strandat 52.109 kb on + strandat 52.109 kb on + strandat 52.110 kb on - strandat 52.135 kb on + strandat 52.153 kb on - strandat 52.157 kb on + strandat 52.158 kb on - strandat 52.158 kb on - strandat 52.163 kb on + strandat 52.191 kb on + strand, within HER17_RS00230at 52.191 kb on + strand, within HER17_RS00230at 52.191 kb on + strand, within HER17_RS00230at 52.191 kb on + strand, within HER17_RS00230at 52.192 kb on - strand, within HER17_RS00230at 52.192 kb on - strand, within HER17_RS00230at 52.316 kb on + strand, within HER17_RS00230at 52.317 kb on - strand, within HER17_RS00230at 52.365 kb on + strand, within HER17_RS00230at 52.365 kb on + strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.366 kb on - strand, within HER17_RS00230at 52.452 kb on + strand, within HER17_RS00230at 52.605 kb on + strand, within HER17_RS00230at 52.605 kb on + strand, within HER17_RS00230at 52.606 kb on - strand, within HER17_RS00230at 52.606 kb on - strand, within HER17_RS00230at 52.910 kb on - strandat 52.918 kb on + strandat 52.981 kb on - strandat 52.981 kb on - strandat 52.983 kb on + strandat 52.984 kb on - strandat 52.984 kb on - strandat 52.984 kb on - strandat 52.989 kb on + strandat 53.012 kb on + strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.017 kb on - strandat 53.077 kb on + strandat 53.078 kb on - strandat 53.171 kb on - strand, within HER17_RS00235at 53.248 kb on - strand, within HER17_RS00235at 53.252 kb on + strand, within HER17_RS00235at 53.252 kb on + strand, within HER17_RS00235at 53.311 kb on + strand, within HER17_RS00235at 53.311 kb on + strand, within HER17_RS00235at 53.312 kb on - strand, within HER17_RS00235at 53.626 kb on - strand, within HER17_RS00235at 53.626 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.741 kb on - strand, within HER17_RS00235at 53.742 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.785 kb on - strand, within HER17_RS00235at 53.827 kb on + strand, within HER17_RS00235at 53.828 kb on - strand, within HER17_RS00235at 53.828 kb on - strand, within HER17_RS00235at 53.852 kb on + strand, within HER17_RS00235at 53.870 kb on - strand, within HER17_RS00235at 53.940 kb on + strandat 53.941 kb on - strandat 53.941 kb on - strandat 53.972 kb on + strandat 53.972 kb on + strandat 53.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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51,094 + +0.1
51,095 - +0.8
51,100 + +0.3
51,108 + +0.4
51,108 + +0.4
51,109 - +0.0
51,111 + -1.3
51,175 + HER17_RS00225 0.13 -0.2
51,242 + HER17_RS00225 0.19 -0.7
51,242 + HER17_RS00225 0.19 +0.4
51,243 - HER17_RS00225 0.19 +1.0
51,251 + HER17_RS00225 0.20 -1.0
51,251 + HER17_RS00225 0.20 +0.4
51,251 + HER17_RS00225 0.20 +0.2
51,251 + HER17_RS00225 0.20 -0.2
51,251 + HER17_RS00225 0.20 -1.1
51,254 - HER17_RS00225 0.20 +0.4
51,254 - HER17_RS00225 0.20 -0.3
51,439 + HER17_RS00225 0.38 -0.6
51,439 + HER17_RS00225 0.38 -0.9
51,439 + HER17_RS00225 0.38 +0.2
51,440 - HER17_RS00225 0.39 +0.0
51,440 - HER17_RS00225 0.39 -0.1
51,440 - HER17_RS00225 0.39 -0.3
51,440 - HER17_RS00225 0.39 -1.3
51,478 + HER17_RS00225 0.42 +0.9
51,478 + HER17_RS00225 0.42 -0.5
51,479 - HER17_RS00225 0.42 -0.7
51,479 - HER17_RS00225 0.42 -0.8
51,505 + HER17_RS00225 0.45 -0.4
51,506 - HER17_RS00225 0.45 +0.2
51,506 - HER17_RS00225 0.45 -0.1
51,551 - HER17_RS00225 0.49 +1.3
51,598 + HER17_RS00225 0.54 +1.9
51,599 - HER17_RS00225 0.54 -0.0
51,615 + HER17_RS00225 0.56 +0.5
51,616 - HER17_RS00225 0.56 -0.4
51,616 - HER17_RS00225 0.56 -2.1
51,712 + HER17_RS00225 0.65 -0.4
51,713 - HER17_RS00225 0.65 +0.8
51,752 + HER17_RS00225 0.69 +0.5
51,753 - HER17_RS00225 0.69 +0.6
51,753 - HER17_RS00225 0.69 +0.5
51,753 - HER17_RS00225 0.69 +0.2
51,781 - HER17_RS00225 0.72 +0.8
51,817 + HER17_RS00225 0.75 -0.3
51,975 + +0.0
52,028 + +0.0
52,028 + +0.4
52,064 + +1.6
52,076 + -0.6
52,105 + +0.3
52,105 + -0.4
52,105 + -0.0
52,105 + +0.4
52,105 + -0.1
52,106 - +0.2
52,106 - -1.0
52,106 - -0.0
52,106 - +0.5
52,109 + -0.4
52,109 + +1.6
52,110 - +0.2
52,135 + -0.1
52,153 - -0.4
52,157 + -0.8
52,158 - -1.0
52,158 - +1.0
52,163 + -1.0
52,191 + HER17_RS00230 0.12 -0.4
52,191 + HER17_RS00230 0.12 -1.3
52,191 + HER17_RS00230 0.12 +0.0
52,191 + HER17_RS00230 0.12 +0.6
52,192 - HER17_RS00230 0.12 +0.7
52,192 - HER17_RS00230 0.12 +0.3
52,316 + HER17_RS00230 0.26 -0.2
52,317 - HER17_RS00230 0.26 +0.5
52,365 + HER17_RS00230 0.32 -0.0
52,365 + HER17_RS00230 0.32 -0.1
52,366 - HER17_RS00230 0.32 +0.1
52,366 - HER17_RS00230 0.32 -0.9
52,366 - HER17_RS00230 0.32 -0.3
52,366 - HER17_RS00230 0.32 +0.2
52,366 - HER17_RS00230 0.32 +0.2
52,452 + HER17_RS00230 0.41 +0.3
52,605 + HER17_RS00230 0.58 -1.3
52,605 + HER17_RS00230 0.58 +0.4
52,606 - HER17_RS00230 0.58 +1.2
52,606 - HER17_RS00230 0.58 +0.0
52,910 - -0.0
52,918 + -0.7
52,981 - -0.2
52,981 - +0.0
52,983 + +0.3
52,984 - +0.8
52,984 - +0.4
52,984 - -0.1
52,989 + -1.3
53,012 + +1.4
53,013 - -2.0
53,013 - -0.0
53,013 - +0.5
53,013 - +0.4
53,013 - -1.2
53,013 - -1.5
53,013 - +1.3
53,017 - +0.2
53,077 + -0.3
53,078 - +0.4
53,171 - HER17_RS00235 0.18 -0.3
53,248 - HER17_RS00235 0.26 +0.8
53,252 + HER17_RS00235 0.26 -0.7
53,252 + HER17_RS00235 0.26 +0.3
53,311 + HER17_RS00235 0.32 +0.6
53,311 + HER17_RS00235 0.32 +0.1
53,312 - HER17_RS00235 0.32 +0.4
53,626 - HER17_RS00235 0.64 -0.6
53,626 - HER17_RS00235 0.64 +0.8
53,678 - HER17_RS00235 0.70 -0.4
53,678 - HER17_RS00235 0.70 -0.2
53,678 - HER17_RS00235 0.70 -0.1
53,741 - HER17_RS00235 0.76 -0.4
53,742 + HER17_RS00235 0.76 -1.2
53,784 + HER17_RS00235 0.80 -0.7
53,784 + HER17_RS00235 0.80 +0.2
53,784 + HER17_RS00235 0.80 +0.6
53,784 + HER17_RS00235 0.80 -0.1
53,785 - HER17_RS00235 0.80 +0.6
53,827 + HER17_RS00235 0.85 +0.0
53,828 - HER17_RS00235 0.85 -0.3
53,828 - HER17_RS00235 0.85 +0.5
53,852 + HER17_RS00235 0.87 -0.1
53,870 - HER17_RS00235 0.89 +0.1
53,940 + +0.0
53,941 - +0.3
53,941 - -0.2
53,972 + -0.1
53,972 + +0.5
53,973 - -0.1

Or see this region's nucleotide sequence