Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21080

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,714,755	-		HER17_RS21075	0.47	+0.5
4,714,797	+		HER17_RS21075	0.50	+0.6
4,714,801	-		HER17_RS21075	0.50	-0.1
4,714,982	+		HER17_RS21075	0.62	-0.2
4,714,983	-		HER17_RS21075	0.62	+0.1
4,714,984	+		HER17_RS21075	0.62	+0.2
4,714,984	+		HER17_RS21075	0.62	+0.2
4,714,985	-		HER17_RS21075	0.62	+0.0
4,714,985	-		HER17_RS21075	0.62	-0.4
4,714,985	-		HER17_RS21075	0.62	+0.3
4,714,985	-		HER17_RS21075	0.62	+0.4
4,714,985	-		HER17_RS21075	0.62	-0.7
4,714,985	-		HER17_RS21075	0.62	-1.0
4,714,985	-		HER17_RS21075	0.62	+0.1
4,714,985	-		HER17_RS21075	0.62	-1.7
4,714,985	-		HER17_RS21075	0.62	-0.3
4,715,139	+		HER17_RS21075	0.72	+0.3
4,715,140	-		HER17_RS21075	0.72	-0.6
4,715,211	+		HER17_RS21075	0.76	+0.4
4,715,211	+		HER17_RS21075	0.76	-0.7
4,715,211	+		HER17_RS21075	0.76	+0.7
4,715,211	+		HER17_RS21075	0.76	-0.5
4,715,211	+		HER17_RS21075	0.76	+0.4
4,715,211	+		HER17_RS21075	0.76	-0.7
4,715,211	+		HER17_RS21075	0.76	-1.4
4,715,215	+		HER17_RS21075	0.77	+0.8
4,715,215	+		HER17_RS21075	0.77	+0.2
4,715,215	+		HER17_RS21075	0.77	-0.7
4,715,216	-		HER17_RS21075	0.77	+1.3
4,715,216	-		HER17_RS21075	0.77	+1.2
4,715,216	-		HER17_RS21075	0.77	-0.0
4,715,216	-		HER17_RS21075	0.77	-0.2
4,715,216	-		HER17_RS21075	0.77	-0.2
4,715,219	+		HER17_RS21075	0.77	+0.2
4,715,219	+		HER17_RS21075	0.77	-0.4
4,715,219	+		HER17_RS21075	0.77	+0.0
4,715,219	+		HER17_RS21075	0.77	-0.7
4,715,219	+		HER17_RS21075	0.77	+0.2
4,715,219	+		HER17_RS21075	0.77	+0.4
4,715,219	+		HER17_RS21075	0.77	-0.2
4,715,220	-		HER17_RS21075	0.77	+0.2
4,715,220	-		HER17_RS21075	0.77	-0.0
4,715,220	-		HER17_RS21075	0.77	+0.5
4,715,220	-		HER17_RS21075	0.77	+0.6
4,715,220	-		HER17_RS21075	0.77	+0.7
4,715,220	-		HER17_RS21075	0.77	+0.2
4,715,220	-		HER17_RS21075	0.77	-0.0
4,715,220	-		HER17_RS21075	0.77	-0.1
4,715,220	-		HER17_RS21075	0.77	-0.5
4,715,220	-		HER17_RS21075	0.77	-0.4
4,715,228	-		HER17_RS21075	0.78	+0.4
4,715,351	+		HER17_RS21075	0.86	-0.8
4,715,351	+		HER17_RS21075	0.86	+0.2
4,715,351	+		HER17_RS21075	0.86	+0.9
4,715,352	-		HER17_RS21075	0.86	+1.3
4,715,352	-		HER17_RS21075	0.86	+0.0
4,715,365	-		HER17_RS21075	0.86	+0.5
4,715,398	+		HER17_RS21075	0.89	+0.6
4,715,398	+		HER17_RS21075	0.89	-0.7
4,715,398	+		HER17_RS21075	0.89	+0.4
4,715,398	+		HER17_RS21075	0.89	-0.2
4,715,399	-		HER17_RS21075	0.89	+0.4
4,715,399	-		HER17_RS21075	0.89	-0.4
4,715,399	-		HER17_RS21075	0.89	-1.2
4,715,511	-				+0.1
4,715,514	+				-0.2
4,715,514	+				+0.9
4,715,514	+				-0.6
4,715,514	+				+0.4
4,715,514	+				+0.7
4,715,658	+				-1.4
4,715,659	-				+0.7
4,715,659	-				-0.7
4,715,672	+				-0.4
4,715,672	+				-0.5
4,715,673	-				+0.3
4,715,691	+				+0.2
4,715,692	-				+1.6
4,715,694	+				-0.4
4,715,694	+				-0.1
4,715,694	+				+0.3
4,715,695	-				-0.2
4,715,695	-				-0.5
4,715,695	-				-0.2
4,715,753	-				+0.1
4,715,775	-				-0.7
4,715,787	-				+0.1
4,715,787	-				-0.6
4,715,788	+				+0.1
4,715,788	+				+0.2
4,715,894	-		HER17_RS21080	0.20	+1.0
4,715,895	+		HER17_RS21080	0.21	+0.1
4,715,896	-		HER17_RS21080	0.21	+0.0
4,716,055	+		HER17_RS21080	0.37	+0.1
4,716,056	-		HER17_RS21080	0.37	+1.2
4,716,056	-		HER17_RS21080	0.37	+0.3
4,716,056	-		HER17_RS21080	0.37	-0.1
4,716,056	-		HER17_RS21080	0.37	+0.1
4,716,058	+		HER17_RS21080	0.37	+0.3
4,716,058	+		HER17_RS21080	0.37	-0.1
4,716,059	-		HER17_RS21080	0.37	-0.8
4,716,143	+		HER17_RS21080	0.45	+0.3
4,716,144	-		HER17_RS21080	0.46	-1.5
4,716,208	+		HER17_RS21080	0.52	-0.6
4,716,209	-		HER17_RS21080	0.52	-0.0
4,716,211	+		HER17_RS21080	0.52	+1.1
4,716,241	-		HER17_RS21080	0.55	+0.1
4,716,271	-		HER17_RS21080	0.58	-0.9
4,716,366	-		HER17_RS21080	0.68	+0.3
4,716,391	+		HER17_RS21080	0.70	+0.0
4,716,434	+		HER17_RS21080	0.75	+0.5
4,716,434	+		HER17_RS21080	0.75	-0.1
4,716,434	+		HER17_RS21080	0.75	+0.3
4,716,465	-		HER17_RS21080	0.78	+0.4
4,716,603	-				+0.1
4,716,638	+				-0.3
4,716,639	-				-0.7
4,716,639	-				+0.3
4,716,639	-				-0.8
4,716,688	+				+0.0
4,716,689	-				-0.0
4,716,706	+				-1.1
4,716,707	-				-0.5
4,716,777	+				+0.3
4,716,785	+				+0.1
4,716,785	+				+0.7
4,716,823	+				-0.1
4,716,823	+				-0.7
4,716,823	+				-0.8
4,716,824	-				+0.4
4,716,824	-				-1.3
4,716,824	-				-1.5
4,716,824	-				-0.1
4,716,865	+				+1.3
4,716,865	+				-0.4
4,716,866	-				-0.4
4,716,866	-				+0.6
4,716,866	-				-0.2
4,716,874	+				+1.2
4,716,878	+				+1.3
4,716,879	-				+0.0
4,716,903	+				+0.3
4,716,914	+				-0.8
4,716,915	-				-0.5
4,716,960	-				+0.0
4,716,990	+				+0.1
4,716,991	-				+1.0
4,717,002	+				+0.5
4,717,002	+				+0.3
4,717,003	-				+0.3
4,717,003	-				-0.2
4,717,011	+				-0.2
4,717,079	+				+0.9
4,717,079	+				-2.0
4,717,079	+				-0.2
4,717,080	-				-0.8
4,717,112	-				+0.1
4,717,147	+				+1.1
4,717,155	+				+0.4
4,717,169	+				+1.8
4,717,197	-				+0.5
4,717,204	+				-0.9
4,717,239	-				-0.2
4,717,239	-				-0.9
4,717,239	-				-1.6
4,717,257	+				+0.8
4,717,271	-				-1.0
4,717,334	-		HER17_RS21085	0.13	-0.0
4,717,448	+		HER17_RS21085	0.22	-0.1
4,717,448	+		HER17_RS21085	0.22	-0.0
4,717,449	-		HER17_RS21085	0.22	-0.8
4,717,449	-		HER17_RS21085	0.22	-1.5
4,717,449	-		HER17_RS21085	0.22	-0.4
4,717,449	-		HER17_RS21085	0.22	-0.8
4,717,451	+		HER17_RS21085	0.22	+0.8
4,717,451	+		HER17_RS21085	0.22	-0.1
4,717,502	+		HER17_RS21085	0.26	-0.2
4,717,502	+		HER17_RS21085	0.26	+0.3
4,717,503	-		HER17_RS21085	0.26	+0.2
4,717,503	-		HER17_RS21085	0.26	+0.2
4,717,569	+		HER17_RS21085	0.31	-0.3
4,717,569	+		HER17_RS21085	0.31	-0.4
4,717,569	+		HER17_RS21085	0.31	+0.7