Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20075

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,503,570	-		HER17_RS20065	0.28	-0.4
4,503,578	-		HER17_RS20065	0.31	-0.4
4,503,578	-		HER17_RS20065	0.31	+0.6
4,503,591	+		HER17_RS20065	0.35	+0.2
4,503,592	-		HER17_RS20065	0.35	-1.8
4,503,657	+		HER17_RS20065	0.58	+0.4
4,503,696	+		HER17_RS20065	0.72	+0.6
4,503,696	+		HER17_RS20065	0.72	+0.3
4,503,696	+		HER17_RS20065	0.72	+0.5
4,503,696	+		HER17_RS20065	0.72	+0.1
4,503,696	+		HER17_RS20065	0.72	+1.6
4,503,697	-		HER17_RS20065	0.72	-0.0
4,503,697	-		HER17_RS20065	0.72	-0.8
4,503,697	-		HER17_RS20065	0.72	-0.7
4,503,697	-		HER17_RS20065	0.72	-1.9
4,503,697	-		HER17_RS20065	0.72	+0.5
4,503,700	+		HER17_RS20065	0.73	+0.1
4,503,700	+		HER17_RS20065	0.73	-0.2
4,503,700	+		HER17_RS20065	0.73	-0.1
4,503,700	+		HER17_RS20065	0.73	-1.3
4,503,701	-		HER17_RS20065	0.73	-1.0
4,503,701	-		HER17_RS20065	0.73	-0.1
4,503,701	-		HER17_RS20065	0.73	+0.1
4,503,701	-		HER17_RS20065	0.73	-0.3
4,503,701	-		HER17_RS20065	0.73	+0.8
4,503,701	-		HER17_RS20065	0.73	-1.2
4,503,701	-		HER17_RS20065	0.73	+0.5
4,503,717	-		HER17_RS20065	0.79	-0.5
4,503,726	+		HER17_RS20065	0.82	-0.7
4,503,747	+		HER17_RS20065	0.89	+0.7
4,503,747	+		HER17_RS20065	0.89	-1.7
4,503,748	-		HER17_RS20065	0.90	-0.4
4,503,753	+				+0.5
4,503,753	+				-1.6
4,503,754	-				-1.1
4,503,754	-				-0.6
4,503,760	-				+0.6
4,503,765	+				-0.3
4,503,765	+				+0.3
4,503,860	+				-0.2
4,503,861	-				+1.5
4,503,870	+				-0.1
4,503,870	+				-0.7
4,503,872	+				-0.2
4,503,873	-				-2.6
4,503,873	-				-0.1
4,503,891	-				-0.1
4,503,908	+				-0.2
4,503,911	+				-1.3
4,503,951	+		HER17_RS20070	0.16	+0.1
4,503,951	+		HER17_RS20070	0.16	+1.0
4,503,999	+		HER17_RS20070	0.26	-0.3
4,504,000	-		HER17_RS20070	0.27	-1.0
4,504,000	-		HER17_RS20070	0.27	-0.1
4,504,000	-		HER17_RS20070	0.27	+0.8
4,504,107	+		HER17_RS20070	0.49	+0.7
4,504,107	+		HER17_RS20070	0.49	+0.4
4,504,173	+		HER17_RS20070	0.63	-0.6
4,504,224	+		HER17_RS20070	0.74	+0.7
4,504,321	+				-1.4
4,504,329	+				+1.1
4,504,330	-				-0.2
4,504,421	-				+0.8
4,504,437	-				+0.1
4,504,441	-				+0.1
4,504,442	+				-0.8
4,504,442	+				-0.1
4,504,442	+				+0.6
4,504,442	+				-0.8
4,504,442	+				+0.4
4,504,442	+				-0.5
4,504,442	+				-0.2
4,504,442	+				+0.3
4,504,442	+				-0.2
4,504,442	+				-0.6
4,504,442	+				-0.1
4,504,442	+				-0.6
4,504,442	+				+0.0
4,504,443	-				+1.0
4,504,443	-				+0.3
4,504,443	-				-0.7
4,504,443	-				-0.8
4,504,443	-				-0.3
4,504,443	-				-1.7
4,504,443	-				+0.6
4,504,443	-				+0.1
4,504,586	+				+1.6
4,504,586	+				-0.2
4,504,587	-				+0.7
4,504,593	+				-0.7
4,504,594	-		HER17_RS20075	0.10	+0.2
4,504,614	+		HER17_RS20075	0.12	-0.2
4,504,615	-		HER17_RS20075	0.12	-0.2
4,504,631	-		HER17_RS20075	0.14	-0.0
4,504,633	+		HER17_RS20075	0.15	-0.5
4,504,633	+		HER17_RS20075	0.15	+0.9
4,504,634	-		HER17_RS20075	0.15	-1.7
4,504,634	-		HER17_RS20075	0.15	+1.1
4,504,648	+		HER17_RS20075	0.16	-0.5
4,504,649	-		HER17_RS20075	0.16	+0.4
4,504,873	-		HER17_RS20075	0.43	-0.4
4,504,929	+		HER17_RS20075	0.49	+1.5
4,504,930	-		HER17_RS20075	0.49	+0.0
4,504,954	+		HER17_RS20075	0.52	+0.2
4,505,113	+		HER17_RS20075	0.71	-0.2
4,505,166	-		HER17_RS20075	0.77	-2.0
4,505,180	+		HER17_RS20075	0.78	+1.1
4,505,181	-		HER17_RS20075	0.78	-0.3
4,505,216	-		HER17_RS20075	0.83	+0.3
4,505,225	+		HER17_RS20075	0.84	+0.4
4,505,226	-		HER17_RS20075	0.84	-1.0
4,505,274	-		HER17_RS20075	0.89	+0.8
4,505,297	+				-1.1
4,505,314	+				+0.1
4,505,323	-				-0.3
4,505,366	+				-0.4
4,505,382	-				+0.4
4,505,391	+				+0.0
4,505,396	+				+0.8
4,505,396	+				-0.3
4,505,396	+				-0.5
4,505,396	+				+0.3
4,505,397	-				+0.2
4,505,397	-				+0.6
4,505,397	-				-0.7
4,505,397	-				+0.9
4,505,507	+		HER17_RS20080	0.40	+1.3
4,505,554	+		HER17_RS20080	0.58	+1.1
4,505,554	+		HER17_RS20080	0.58	-0.1
4,505,554	+		HER17_RS20080	0.58	-0.5
4,505,667	+				+0.6
4,505,667	+				+0.4
4,505,667	+				+0.3
4,505,668	-				+0.1
4,505,668	-				-0.3
4,505,668	-				-0.8
4,505,668	-				+0.2
4,505,668	-				+0.6
4,505,668	-				+0.6
4,505,671	+				-0.3
4,505,671	+				+0.6
4,505,671	+				+2.1
4,505,672	-				-0.1
4,505,672	-				+1.1
4,505,672	-				+0.1
4,505,675	+				-0.4
4,505,676	-				+0.5
4,505,676	-				+0.7
4,505,676	-				-0.3
4,505,679	+				+0.3
4,505,679	+				+0.8
4,505,687	+				-1.0
4,505,688	-				+0.1
4,505,703	+				+0.5
4,505,739	+				-1.6
4,505,739	+				+0.9
4,505,739	+				-0.0
4,505,739	+				+0.1
4,505,740	-				+1.3
4,505,740	-				-0.7
4,505,740	-				+0.2
4,505,742	+				+0.4
4,505,742	+				-0.2
4,505,743	-				+0.5
4,505,743	-				-0.2
4,505,743	-				-1.7
4,505,743	-				-0.4
4,505,743	-				-0.1
4,505,743	-				+0.2
4,505,743	-				+0.0
4,505,743	-				-1.5
4,505,746	+				+1.0
4,505,746	+				+0.4
4,505,746	+				+0.2
4,505,746	+				+0.1
4,505,746	+				+0.9
4,505,746	+				-0.0
4,505,746	+				+2.0
4,505,747	-				-0.2
4,505,747	-				+0.4
4,505,747	-				+0.2
4,505,747	-				-0.6
4,505,747	-				-1.5
4,505,747	-				+0.1
4,505,747	-				+0.2
4,505,750	+				-0.5
4,505,750	+				+1.0
4,505,750	+				+0.5
4,505,751	-				-1.2
4,505,751	-				-0.5
4,505,751	-				-0.8
4,505,752	+				+0.2
4,505,752	+				+0.4
4,505,752	+				+1.0
4,505,753	-				-0.1
4,505,754	+				-0.3
4,505,755	-				-0.8
4,505,755	-				+1.3
4,505,755	-				-0.0
4,505,755	-				+0.9
4,505,755	-				+0.2
4,505,755	-				+0.3
4,505,762	-				-0.7
4,505,809	+				+0.7
4,505,809	+				+1.1
4,505,809	+				+0.2
4,505,809	+				-0.2
4,505,812	-				-1.2
4,505,824	+				+0.3
4,505,825	-				-0.7
4,505,842	-				-0.2
4,505,842	-				+0.2
4,505,842	-				+0.3
4,505,854	-				-0.3
4,505,854	-				-0.4
4,505,892	+		HER17_RS20085	0.12	+0.6
4,505,892	+		HER17_RS20085	0.12	+0.4
4,505,893	-		HER17_RS20085	0.12	-0.8
4,505,893	-		HER17_RS20085	0.12	+0.7
4,505,893	-		HER17_RS20085	0.12	+0.1
4,505,897	+		HER17_RS20085	0.13	-0.5
4,505,898	-		HER17_RS20085	0.14	-0.6
4,505,898	-		HER17_RS20085	0.14	+2.3
4,505,898	-		HER17_RS20085	0.14	-0.2
4,506,012	+		HER17_RS20085	0.41	+0.3
4,506,012	+		HER17_RS20085	0.41	+0.8
4,506,012	+		HER17_RS20085	0.41	+0.0
4,506,013	-		HER17_RS20085	0.42	+0.5
4,506,159	+		HER17_RS20085	0.77	+0.1
4,506,160	-		HER17_RS20085	0.77	-2.2
4,506,204	-		HER17_RS20085	0.88	+0.6
4,506,204	-		HER17_RS20085	0.88	-1.2
4,506,206	+		HER17_RS20085	0.89	+0.9
4,506,206	+		HER17_RS20085	0.89	+0.7
4,506,206	+		HER17_RS20085	0.89	-0.5
4,506,206	+		HER17_RS20085	0.89	+0.2
4,506,207	-		HER17_RS20085	0.89	-0.3
4,506,207	-		HER17_RS20085	0.89	+0.2
4,506,207	-		HER17_RS20085	0.89	+0.7
4,506,207	-		HER17_RS20085	0.89	+0.0
4,506,207	-		HER17_RS20085	0.89	-0.8
4,506,207	-		HER17_RS20085	0.89	+1.2
4,506,212	+				-0.0
4,506,212	+				+0.1
4,506,212	+				+1.3
4,506,212	+				-0.1
4,506,213	-				-0.2
4,506,213	-				+0.0
4,506,213	-				+0.1
4,506,213	-				+0.7
4,506,213	-				-2.0
4,506,217	+				-0.3
4,506,241	+				+0.3
4,506,261	+				+0.9
4,506,261	+				+0.3
4,506,261	+				+0.1
4,506,262	-				-0.4
4,506,266	+				-0.3
4,506,266	+				+0.9
4,506,266	+				-0.0
4,506,266	+				-0.7
4,506,267	-				+0.0
4,506,320	-				-0.2