Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20020

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,494,461	+		HER17_RS20010	0.40	+1.1
4,494,493	+		HER17_RS20010	0.45	-0.2
4,494,494	-		HER17_RS20010	0.46	-0.6
4,494,494	-		HER17_RS20010	0.46	-0.4
4,494,506	+		HER17_RS20010	0.47	+0.6
4,494,508	+		HER17_RS20010	0.48	+0.2
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,508	+		HER17_RS20010	0.48	+0.5
4,494,508	+		HER17_RS20010	0.48	-0.1
4,494,508	+		HER17_RS20010	0.48	+0.6
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,508	+		HER17_RS20010	0.48	-0.4
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,509	-		HER17_RS20010	0.48	+0.1
4,494,509	-		HER17_RS20010	0.48	-1.5
4,494,544	+		HER17_RS20010	0.53	+0.2
4,494,545	-		HER17_RS20010	0.54	-0.2
4,494,565	+		HER17_RS20010	0.57	-0.3
4,494,566	-		HER17_RS20010	0.57	-0.7
4,494,598	+		HER17_RS20010	0.62	+0.5
4,494,598	+		HER17_RS20010	0.62	-0.5
4,494,599	-		HER17_RS20010	0.62	+0.3
4,494,599	-		HER17_RS20010	0.62	+0.1
4,494,599	-		HER17_RS20010	0.62	+0.1
4,494,602	-		HER17_RS20010	0.63	+0.6
4,494,629	-		HER17_RS20010	0.67	-0.2
4,494,643	+		HER17_RS20010	0.69	-0.0
4,494,643	+		HER17_RS20010	0.69	-2.0
4,494,644	-		HER17_RS20010	0.69	-1.1
4,494,644	-		HER17_RS20010	0.69	-0.5
4,494,644	-		HER17_RS20010	0.69	-0.0
4,494,663	+		HER17_RS20010	0.72	+1.3
4,494,663	+		HER17_RS20010	0.72	+0.4
4,494,663	+		HER17_RS20010	0.72	+0.2
4,494,664	-		HER17_RS20010	0.73	-1.0
4,494,664	-		HER17_RS20010	0.73	+0.5
4,494,664	-		HER17_RS20010	0.73	+0.1
4,494,664	-		HER17_RS20010	0.73	-0.5
4,494,664	-		HER17_RS20010	0.73	-0.3
4,494,664	-		HER17_RS20010	0.73	+0.7
4,494,668	+		HER17_RS20010	0.73	+0.4
4,494,668	+		HER17_RS20010	0.73	+0.7
4,494,669	-		HER17_RS20010	0.73	+0.4
4,494,669	-		HER17_RS20010	0.73	+0.2
4,494,671	+		HER17_RS20010	0.74	+0.4
4,494,672	-		HER17_RS20010	0.74	+0.5
4,494,672	-		HER17_RS20010	0.74	+0.5
4,494,679	+		HER17_RS20010	0.75	-0.9
4,494,680	-		HER17_RS20010	0.75	-0.1
4,494,831	-				-0.6
4,494,831	-				-0.1
4,494,843	-				+1.0
4,494,850	+				+0.9
4,494,850	+				-0.2
4,494,850	+				+0.5
4,494,850	+				+0.5
4,494,850	+				-0.6
4,494,850	+				-0.3
4,494,850	+				-0.2
4,494,850	+				+0.4
4,494,850	+				+0.7
4,494,850	+				+0.5
4,494,850	+				+0.9
4,494,851	-				-0.4
4,494,851	-				+0.2
4,494,851	-				+1.3
4,494,851	-				-1.7
4,494,853	+				+0.5
4,494,853	+				+0.1
4,494,938	+		HER17_RS20015	0.15	-3.0
4,494,938	+		HER17_RS20015	0.15	-1.7
4,494,939	-		HER17_RS20015	0.15	-0.9
4,494,962	+		HER17_RS20015	0.19	-0.8
4,494,962	+		HER17_RS20015	0.19	-0.6
4,494,962	+		HER17_RS20015	0.19	+0.4
4,494,962	+		HER17_RS20015	0.19	+0.2
4,494,962	+		HER17_RS20015	0.19	+0.5
4,494,962	+		HER17_RS20015	0.19	-0.0
4,494,962	+		HER17_RS20015	0.19	-0.2
4,494,962	+		HER17_RS20015	0.19	+0.4
4,494,962	+		HER17_RS20015	0.19	-0.1
4,494,962	+		HER17_RS20015	0.19	+0.3
4,494,962	+		HER17_RS20015	0.19	-0.6
4,494,963	-		HER17_RS20015	0.20	+2.5
4,494,963	-		HER17_RS20015	0.20	-0.7
4,494,963	-		HER17_RS20015	0.20	-1.0
4,494,963	-		HER17_RS20015	0.20	-1.5
4,494,963	-		HER17_RS20015	0.20	-0.7
4,494,963	-		HER17_RS20015	0.20	-0.2
4,494,963	-		HER17_RS20015	0.20	+0.1
4,494,963	-		HER17_RS20015	0.20	-1.5
4,494,963	-		HER17_RS20015	0.20	-1.9
4,494,963	-		HER17_RS20015	0.20	+0.3
4,494,964	+		HER17_RS20015	0.20	+0.5
4,494,964	+		HER17_RS20015	0.20	+0.1
4,494,964	+		HER17_RS20015	0.20	-0.4
4,494,965	-		HER17_RS20015	0.20	-0.9
4,494,966	+		HER17_RS20015	0.20	-0.2
4,494,966	+		HER17_RS20015	0.20	+1.1
4,494,967	-		HER17_RS20015	0.20	+0.2
4,494,967	-		HER17_RS20015	0.20	+0.5
4,495,074	-		HER17_RS20015	0.39	-1.2
4,495,112	+		HER17_RS20015	0.46	-0.0
4,495,134	-		HER17_RS20015	0.50	-0.3
4,495,134	-		HER17_RS20015	0.50	-0.2
4,495,142	+		HER17_RS20015	0.51	-0.5
4,495,142	+		HER17_RS20015	0.51	-1.9
4,495,143	-		HER17_RS20015	0.51	+0.7
4,495,143	-		HER17_RS20015	0.51	-0.1
4,495,150	+		HER17_RS20015	0.53	+0.5
4,495,150	+		HER17_RS20015	0.53	+0.4
4,495,163	+		HER17_RS20015	0.55	+0.2
4,495,186	+		HER17_RS20015	0.59	+0.3
4,495,187	-		HER17_RS20015	0.59	+0.8
4,495,300	+		HER17_RS20015	0.79	+0.3
4,495,300	+		HER17_RS20015	0.79	-0.5
4,495,379	+				-0.6
4,495,379	+				-0.1
4,495,380	-				+2.5
4,495,380	-				+0.6
4,495,582	+		HER17_RS20020	0.20	-1.9
4,495,582	+		HER17_RS20020	0.20	+0.5
4,495,582	+		HER17_RS20020	0.20	-0.7
4,495,587	+		HER17_RS20020	0.21	-0.7
4,495,962	+		HER17_RS20020	0.69	+0.9
4,495,964	+		HER17_RS20020	0.69	+0.1
4,495,964	+		HER17_RS20020	0.69	-0.8
4,495,964	+		HER17_RS20020	0.69	-0.0
4,495,964	+		HER17_RS20020	0.69	+0.5
4,495,964	+		HER17_RS20020	0.69	-0.4
4,495,965	-		HER17_RS20020	0.69	-5.3
4,495,982	+		HER17_RS20020	0.71	+1.0
4,495,990	+		HER17_RS20020	0.72	+0.1
4,495,991	-		HER17_RS20020	0.73	-2.2
4,496,060	+		HER17_RS20020	0.81	+0.0
4,496,061	-		HER17_RS20020	0.81	-4.7
4,496,121	+		HER17_RS20020	0.89	+0.7
4,496,200	+				+0.1
4,496,200	+				-0.3
4,496,200	+				-0.3
4,496,201	-				-4.9
4,496,201	-				-3.6
4,496,229	-				-0.9
4,496,229	-				-0.5
4,496,242	+				-1.6
4,496,242	+				-0.9
4,496,242	+				+0.2
4,496,243	-				-0.3
4,496,243	-				-1.5
4,496,243	-				-3.2
4,496,243	-				-4.6
4,496,244	+				+0.0
4,496,287	+				-1.7
4,496,320	+		HER17_RS20025	0.13	+0.3
4,496,320	+		HER17_RS20025	0.13	-0.0
4,496,320	+		HER17_RS20025	0.13	-0.3
4,496,320	+		HER17_RS20025	0.13	+0.3
4,496,321	-		HER17_RS20025	0.13	-3.1
4,496,321	-		HER17_RS20025	0.13	-1.8
4,496,321	-		HER17_RS20025	0.13	-2.5
4,496,377	+		HER17_RS20025	0.20	-0.4
4,496,377	+		HER17_RS20025	0.20	-0.5
4,496,378	-		HER17_RS20025	0.20	-3.9
4,496,378	-		HER17_RS20025	0.20	-3.8
4,496,378	-		HER17_RS20025	0.20	-4.1
4,496,378	-		HER17_RS20025	0.20	-2.0
4,496,379	+		HER17_RS20025	0.20	-1.2
4,496,379	+		HER17_RS20025	0.20	-0.7
4,496,379	+		HER17_RS20025	0.20	+0.3
4,496,379	+		HER17_RS20025	0.20	-2.3
4,496,379	+		HER17_RS20025	0.20	-0.3
4,496,379	+		HER17_RS20025	0.20	+0.8
4,496,380	-		HER17_RS20025	0.21	-5.0
4,496,380	-		HER17_RS20025	0.21	-3.7
4,496,380	-		HER17_RS20025	0.21	-2.8
4,496,380	-		HER17_RS20025	0.21	-2.5
4,496,380	-		HER17_RS20025	0.21	-5.3
4,496,411	+		HER17_RS20025	0.24	-0.2
4,496,411	+		HER17_RS20025	0.24	+0.2
4,496,412	-		HER17_RS20025	0.24	-4.6
4,496,412	-		HER17_RS20025	0.24	-3.5
4,496,412	-		HER17_RS20025	0.24	-0.3
4,496,412	-		HER17_RS20025	0.24	-4.2
4,496,527	+		HER17_RS20025	0.39	-0.2
4,496,528	-		HER17_RS20025	0.39	-2.1
4,496,528	-		HER17_RS20025	0.39	-1.2
4,496,528	-		HER17_RS20025	0.39	-2.4
4,496,528	-		HER17_RS20025	0.39	-0.0
4,496,624	+		HER17_RS20025	0.51	+0.2
4,496,624	+		HER17_RS20025	0.51	+0.7
4,496,625	-		HER17_RS20025	0.51	-2.1
4,496,659	+		HER17_RS20025	0.55	-0.5
4,496,686	+		HER17_RS20025	0.58	+1.5
4,496,687	-		HER17_RS20025	0.58	-3.1
4,496,687	-		HER17_RS20025	0.58	-0.9
4,496,713	+		HER17_RS20025	0.62	+0.3
4,496,713	+		HER17_RS20025	0.62	+0.2
4,496,785	-		HER17_RS20025	0.70	-3.4
4,496,983	+				+0.2
4,496,984	-				-3.0
4,497,007	+				+0.1
4,497,007	+				-0.6
4,497,007	+				-0.2
4,497,008	-				-2.5
4,497,008	-				-2.3
4,497,008	-				-1.6
4,497,008	-				-1.3
4,497,026	+				+1.8
4,497,027	-				-5.3
4,497,027	-				-3.8
4,497,049	+				+1.1
4,497,049	+				-0.3
4,497,049	+				+0.6
4,497,050	-				+0.1
4,497,057	+				-0.7
4,497,058	-				+0.3
4,497,058	-				-1.2
4,497,058	-				+0.2
4,497,126	+				+0.1
4,497,169	+				+0.1
4,497,174	-				-0.4