Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18965

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,251,333	+				+0.2
4,251,334	-				+0.4
4,251,334	-				+0.3
4,251,334	-				+0.5
4,251,334	-				+0.8
4,251,334	-				+0.9
4,251,368	-				+0.1
4,251,399	+				+1.0
4,251,400	-				+0.5
4,251,429	-				-1.3
4,251,434	+				+0.2
4,251,434	+				-0.1
4,251,434	+				-0.6
4,251,434	+				-0.7
4,251,434	+				-1.8
4,251,434	+				-1.1
4,251,434	+				+0.4
4,251,434	+				+0.3
4,251,435	-				-0.1
4,251,435	-				-0.2
4,251,435	-				+0.3
4,251,435	-				-0.8
4,251,436	+				+0.8
4,251,436	+				+0.8
4,251,436	+				-0.3
4,251,436	+				-0.1
4,251,437	-				-1.0
4,251,437	-				+0.3
4,251,437	-				+1.5
4,251,437	-				+1.2
4,251,461	+				-0.4
4,251,461	+				+0.1
4,251,462	-				-0.4
4,251,462	-				+0.3
4,251,486	+				+0.4
4,251,520	-				-0.0
4,251,520	-				-2.1
4,251,520	-				-0.9
4,251,547	+				+0.2
4,251,555	+				+0.7
4,251,555	+				-0.6
4,251,742	+		HER17_RS18960	0.26	+0.7
4,251,742	+		HER17_RS18960	0.26	+0.4
4,251,742	+		HER17_RS18960	0.26	+0.9
4,251,743	-		HER17_RS18960	0.26	-0.2
4,251,743	-		HER17_RS18960	0.26	+0.7
4,251,754	-		HER17_RS18960	0.27	-1.6
4,251,760	+		HER17_RS18960	0.28	+0.9
4,251,818	+		HER17_RS18960	0.35	+0.1
4,251,819	-		HER17_RS18960	0.36	-0.2
4,251,974	+		HER17_RS18960	0.55	-0.8
4,252,104	+		HER17_RS18960	0.71	+1.2
4,252,105	-		HER17_RS18960	0.71	+1.2
4,252,119	+		HER17_RS18960	0.73	+0.3
4,252,119	+		HER17_RS18960	0.73	+1.2
4,252,119	+		HER17_RS18960	0.73	+1.9
4,252,120	-		HER17_RS18960	0.73	+0.1
4,252,120	-		HER17_RS18960	0.73	+0.0
4,252,122	+		HER17_RS18960	0.73	+1.0
4,252,122	+		HER17_RS18960	0.73	+0.2
4,252,123	-		HER17_RS18960	0.73	-0.7
4,252,158	+		HER17_RS18960	0.78	+0.8
4,252,159	-		HER17_RS18960	0.78	+0.3
4,252,159	-		HER17_RS18960	0.78	+0.2
4,252,166	-		HER17_RS18960	0.79	+1.8
4,252,228	+		HER17_RS18960	0.86	+0.6
4,252,228	+		HER17_RS18960	0.86	-0.5
4,252,229	-		HER17_RS18960	0.87	-0.1
4,252,285	+				-0.0
4,252,286	-				+1.0
4,252,286	-				+0.1
4,252,286	-				+0.1
4,252,301	-				-1.9
4,252,338	+				-0.5
4,252,338	+				-0.0
4,252,338	+				+0.7
4,252,339	-				+0.3
4,252,339	-				-0.1
4,252,339	-				+0.1
4,252,339	-				+0.9
4,252,341	+				+0.4
4,252,341	+				-0.1
4,252,342	-				+0.0
4,252,418	+				-1.9
4,252,418	+				+0.2
4,252,419	-				+0.0
4,252,419	-				-0.1
4,252,419	-				-0.3
4,252,419	-				-0.0
4,252,419	-				-0.0
4,252,419	-				-0.8
4,252,419	-				+0.4
4,252,427	+				+0.3
4,252,427	+				-0.3
4,252,427	+				+0.5
4,252,427	+				-0.5
4,252,427	+				+0.5
4,252,428	-				+0.1
4,252,428	-				-0.2
4,252,428	-				+0.1
4,252,433	-				-0.3
4,252,433	-				+0.5
4,252,433	-				-0.3
4,252,497	+		HER17_RS18965	0.12	+0.1
4,252,498	-		HER17_RS18965	0.12	-0.4
4,252,580	+		HER17_RS18965	0.19	+1.2
4,252,581	-		HER17_RS18965	0.19	+0.5
4,252,581	-		HER17_RS18965	0.19	+0.1
4,252,731	+		HER17_RS18965	0.30	+0.7
4,252,738	+		HER17_RS18965	0.31	-0.4
4,252,875	-		HER17_RS18965	0.41	+0.4
4,252,886	+		HER17_RS18965	0.42	+0.3
4,253,025	-		HER17_RS18965	0.52	+0.5
4,253,025	-		HER17_RS18965	0.52	+0.9
4,253,025	-		HER17_RS18965	0.52	-0.1
4,253,025	-		HER17_RS18965	0.52	+0.6
4,253,043	-		HER17_RS18965	0.54	-0.2
4,253,043	-		HER17_RS18965	0.54	+0.6
4,253,043	-		HER17_RS18965	0.54	-0.1
4,253,058	+		HER17_RS18965	0.55	-0.0
4,253,058	+		HER17_RS18965	0.55	-0.5
4,253,059	-		HER17_RS18965	0.55	+0.2
4,253,059	-		HER17_RS18965	0.55	+0.3
4,253,059	-		HER17_RS18965	0.55	+0.6
4,253,059	-		HER17_RS18965	0.55	+0.4
4,253,276	+		HER17_RS18965	0.71	+0.5
4,253,375	+		HER17_RS18965	0.79	-0.2
4,253,376	-		HER17_RS18965	0.79	+1.1
4,253,376	-		HER17_RS18965	0.79	+0.1
4,253,418	+		HER17_RS18965	0.82	-0.1
4,253,418	+		HER17_RS18965	0.82	-0.0
4,253,418	+		HER17_RS18965	0.82	+1.0
4,253,418	+		HER17_RS18965	0.82	+0.1
4,253,465	+		HER17_RS18965	0.85	+0.0
4,253,465	+		HER17_RS18965	0.85	+0.2
4,253,465	+		HER17_RS18965	0.85	+0.5
4,253,466	-		HER17_RS18965	0.85	-0.2
4,253,473	-		HER17_RS18965	0.86	+0.3
4,253,590	+				+0.7
4,253,590	+				-0.1
4,253,590	+				+0.4
4,253,591	-				-0.5
4,253,591	-				-1.3
4,253,591	-				+0.0
4,253,591	-				-1.5
4,253,699	-				+1.5
4,253,751	-				-0.1
4,253,751	-				+0.0
4,253,751	-				+0.1
4,253,830	+				-0.1
4,253,830	+				-0.2
4,253,830	+				-0.1
4,253,891	-		HER17_RS18970	0.11	+0.6
4,254,010	-		HER17_RS18970	0.17	+0.2
4,254,081	+		HER17_RS18970	0.20	+0.1
4,254,115	+		HER17_RS18970	0.22	-0.4
4,254,133	+		HER17_RS18970	0.23	+0.2
4,254,157	+		HER17_RS18970	0.24	-0.5
4,254,158	-		HER17_RS18970	0.24	+0.1
4,254,163	-		HER17_RS18970	0.24	-0.4
4,254,163	-		HER17_RS18970	0.24	-0.9
4,254,250	+		HER17_RS18970	0.28	+0.7
4,254,250	+		HER17_RS18970	0.28	+0.2
4,254,250	+		HER17_RS18970	0.28	-0.1
4,254,250	+		HER17_RS18970	0.28	+0.8
4,254,251	-		HER17_RS18970	0.28	-0.3
4,254,319	+		HER17_RS18970	0.31	-1.1
4,254,320	-		HER17_RS18970	0.32	+1.2
4,254,320	-		HER17_RS18970	0.32	+1.2
4,254,320	-		HER17_RS18970	0.32	-1.4
4,254,333	+		HER17_RS18970	0.32	+0.6
4,254,333	+		HER17_RS18970	0.32	-0.3
4,254,437	-		HER17_RS18970	0.37	-0.2
4,254,451	+		HER17_RS18970	0.38	+0.0
4,254,486	-		HER17_RS18970	0.39	+0.7
4,254,486	-		HER17_RS18970	0.39	+0.7
4,254,531	-		HER17_RS18970	0.42	-1.0
4,254,556	-		HER17_RS18970	0.43	-0.0
4,254,563	-		HER17_RS18970	0.43	+0.2
4,254,563	-		HER17_RS18970	0.43	+0.3
4,254,607	-		HER17_RS18970	0.45	+0.7