Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18275

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,114,182	+				-0.2
4,114,187	-				+0.7
4,114,191	-				-1.2
4,114,222	+				-0.9
4,114,223	-				-0.3
4,114,257	-		HER17_RS18265	0.20	-1.6
4,114,270	+		HER17_RS18265	0.25	-0.5
4,114,271	-		HER17_RS18265	0.25	-0.6
4,114,274	+		HER17_RS18265	0.26	-1.0
4,114,274	+		HER17_RS18265	0.26	-0.2
4,114,275	-		HER17_RS18265	0.26	-1.0
4,114,275	-		HER17_RS18265	0.26	-1.4
4,114,380	-		HER17_RS18265	0.65	+0.8
4,114,380	-		HER17_RS18265	0.65	-0.2
4,114,380	-		HER17_RS18265	0.65	-0.9
4,114,385	+		HER17_RS18265	0.67	+0.5
4,114,385	+		HER17_RS18265	0.67	-0.9
4,114,433	+		HER17_RS18265	0.84	-0.5
4,114,473	+				+0.1
4,114,580	+				-1.1
4,114,613	-				+0.2
4,114,621	-				-0.6
4,114,677	+				-0.3
4,114,677	+				-0.4
4,114,677	+				-0.5
4,114,677	+				-0.0
4,114,679	+				+1.1
4,114,679	+				-1.8
4,114,705	+				-2.8
4,114,706	-				+0.2
4,114,731	+				+1.1
4,114,732	-				-0.8
4,114,732	-				+0.6
4,114,742	+				-0.4
4,114,743	-				+0.1
4,114,746	-				+0.4
4,114,755	+				-0.1
4,114,755	+				-0.2
4,114,755	+				-0.1
4,114,755	+				+1.6
4,114,862	-		HER17_RS18270	0.38	-0.5
4,114,864	+		HER17_RS18270	0.38	-0.3
4,114,865	-		HER17_RS18270	0.39	+0.2
4,114,891	-		HER17_RS18270	0.48	+1.1
4,114,920	+		HER17_RS18270	0.59	+0.1
4,114,975	-		HER17_RS18270	0.79	+0.2
4,115,040	+				-0.3
4,115,040	+				-0.4
4,115,041	-				+0.0
4,115,045	+				-0.0
4,115,045	+				-0.0
4,115,045	+				+0.6
4,115,045	+				+0.3
4,115,045	+				+0.3
4,115,045	+				+0.4
4,115,045	+				-0.0
4,115,046	-				-0.1
4,115,046	-				-0.1
4,115,058	+				-1.2
4,115,058	+				+0.5
4,115,058	+				+0.1
4,115,059	-				-0.5
4,115,072	-				+0.5
4,115,101	+				+0.8
4,115,102	-				-0.0
4,115,102	-				+1.4
4,115,102	-				+0.1
4,115,149	+				-0.0
4,115,150	-				-0.5
4,115,151	+				+0.6
4,115,151	+				+0.4
4,115,151	+				-0.2
4,115,152	-				+0.7
4,115,152	-				-1.4
4,115,152	-				-1.1
4,115,205	-				+0.2
4,115,215	+				-1.3
4,115,215	+				-0.3
4,115,216	-				+0.4
4,115,216	-				+0.2
4,115,361	+				+0.8
4,115,361	+				+0.2
4,115,361	+				+1.0
4,115,361	+				-0.3
4,115,364	-				-0.8
4,115,364	-				-0.1
4,115,423	+				+0.2
4,115,424	-				+0.2
4,115,424	-				+0.0
4,115,445	-				-0.2
4,115,464	+				-0.3
4,115,465	-				-1.3
4,115,465	-				+0.1
4,115,520	+				+0.7
4,115,521	-				-0.1
4,115,605	-				+0.6
4,115,647	-				+0.2
4,115,647	-				+0.5
4,115,647	-				+0.2
4,115,647	-				+0.1
4,115,651	-				-0.2
4,115,662	+				-0.3
4,115,667	+				+0.6
4,115,667	+				-0.7
4,115,667	+				+0.5
4,115,668	-				+0.8
4,115,668	-				-0.2
4,115,701	+				+0.1
4,115,702	-				+0.5
4,115,702	-				+1.1
4,115,702	-				-0.3
4,115,702	-				-0.1
4,115,829	+		HER17_RS18275	0.12	+0.1
4,115,829	+		HER17_RS18275	0.12	-1.0
4,115,829	+		HER17_RS18275	0.12	-2.4
4,115,829	+		HER17_RS18275	0.12	-0.7
4,115,830	-		HER17_RS18275	0.12	-0.0
4,115,830	-		HER17_RS18275	0.12	-0.2
4,115,830	-		HER17_RS18275	0.12	+0.8
4,115,830	-		HER17_RS18275	0.12	-0.8
4,115,830	-		HER17_RS18275	0.12	+0.0
4,115,830	-		HER17_RS18275	0.12	-1.0
4,115,831	+		HER17_RS18275	0.12	+0.5
4,115,831	+		HER17_RS18275	0.12	-0.3
4,115,831	+		HER17_RS18275	0.12	-1.4
4,115,831	+		HER17_RS18275	0.12	+1.1
4,115,831	+		HER17_RS18275	0.12	+1.3
4,115,831	+		HER17_RS18275	0.12	+0.1
4,115,831	+		HER17_RS18275	0.12	+0.8
4,115,831	+		HER17_RS18275	0.12	+0.7
4,115,831	+		HER17_RS18275	0.12	-0.3
4,115,831	+		HER17_RS18275	0.12	+0.2
4,115,832	-		HER17_RS18275	0.12	-0.8
4,115,832	-		HER17_RS18275	0.12	+0.1
4,115,832	-		HER17_RS18275	0.12	-0.6
4,115,832	-		HER17_RS18275	0.12	+0.3
4,115,869	-		HER17_RS18275	0.13	-0.2
4,115,869	-		HER17_RS18275	0.13	-0.1
4,115,967	-		HER17_RS18275	0.14	-0.6
4,115,967	-		HER17_RS18275	0.14	-0.2
4,115,970	+		HER17_RS18275	0.15	+0.1
4,116,077	+		HER17_RS18275	0.16	-1.2
4,116,187	-		HER17_RS18275	0.18	-0.7
4,116,194	+		HER17_RS18275	0.19	+0.5
4,116,195	-		HER17_RS18275	0.19	-1.5
4,116,205	-		HER17_RS18275	0.19	-0.9
4,116,341	+		HER17_RS18275	0.21	-0.7
4,116,487	+		HER17_RS18275	0.24	-0.9
4,116,586	-		HER17_RS18275	0.26	+0.8
4,116,627	+		HER17_RS18275	0.26	+0.3
4,116,627	+		HER17_RS18275	0.26	+0.1
4,116,628	-		HER17_RS18275	0.26	-0.1
4,116,768	-		HER17_RS18275	0.29	-1.3
4,116,768	-		HER17_RS18275	0.29	-0.1
4,116,792	+		HER17_RS18275	0.29	+0.7
4,116,798	-		HER17_RS18275	0.30	+0.8
4,116,800	+		HER17_RS18275	0.30	+0.1
4,116,800	+		HER17_RS18275	0.30	+0.2
4,116,816	+		HER17_RS18275	0.30	+0.7
4,116,825	+		HER17_RS18275	0.30	-0.3
4,116,825	+		HER17_RS18275	0.30	+0.2
4,116,826	-		HER17_RS18275	0.30	-0.2
4,116,860	+		HER17_RS18275	0.31	+1.5
4,116,864	+		HER17_RS18275	0.31	-0.8
4,116,864	+		HER17_RS18275	0.31	+0.4
4,116,864	+		HER17_RS18275	0.31	-0.2
4,116,902	+		HER17_RS18275	0.31	-0.2
4,116,924	-		HER17_RS18275	0.32	+0.2
4,116,984	+		HER17_RS18275	0.33	-0.0
4,116,984	+		HER17_RS18275	0.33	-0.8
4,116,984	+		HER17_RS18275	0.33	+0.3
4,116,984	+		HER17_RS18275	0.33	-0.2
4,116,984	+		HER17_RS18275	0.33	+0.2
4,116,984	+		HER17_RS18275	0.33	-1.5
4,116,985	-		HER17_RS18275	0.33	-0.4
4,117,056	+		HER17_RS18275	0.34	+0.7
4,117,057	-		HER17_RS18275	0.34	-0.6
4,117,057	-		HER17_RS18275	0.34	-0.6
4,117,057	-		HER17_RS18275	0.34	-0.5
4,117,060	+		HER17_RS18275	0.34	-0.6
4,117,060	+		HER17_RS18275	0.34	-0.1
4,117,060	+		HER17_RS18275	0.34	+0.0
4,117,060	+		HER17_RS18275	0.34	+1.2
4,117,061	-		HER17_RS18275	0.34	-0.8
4,117,061	-		HER17_RS18275	0.34	+0.7
4,117,061	-		HER17_RS18275	0.34	-0.0
4,117,132	+		HER17_RS18275	0.36	+0.3
4,117,154	+		HER17_RS18275	0.36	+1.1
4,117,155	-		HER17_RS18275	0.36	-0.5
4,117,155	-		HER17_RS18275	0.36	+0.6
4,117,234	-		HER17_RS18275	0.37	-0.5
4,117,244	-		HER17_RS18275	0.38	-0.1
4,117,308	-		HER17_RS18275	0.39	+0.2
4,117,308	-		HER17_RS18275	0.39	+0.2
4,117,308	-		HER17_RS18275	0.39	-0.0
4,117,395	-		HER17_RS18275	0.40	+0.7
4,117,395	-		HER17_RS18275	0.40	-0.5
4,117,483	-		HER17_RS18275	0.42	-0.9
4,117,483	-		HER17_RS18275	0.42	+0.1
4,117,498	+		HER17_RS18275	0.42	+0.2
4,117,644	+		HER17_RS18275	0.45	+0.4
4,117,644	+		HER17_RS18275	0.45	-0.2
4,117,806	-		HER17_RS18275	0.48	+0.5
4,117,841	+		HER17_RS18275	0.49	-0.3
4,117,911	+		HER17_RS18275	0.50	+0.6
4,117,911	+		HER17_RS18275	0.50	-0.0
4,117,911	+		HER17_RS18275	0.50	-0.6
4,117,911	+		HER17_RS18275	0.50	-0.7
4,117,911	+		HER17_RS18275	0.50	+0.1
4,117,911	+		HER17_RS18275	0.50	-0.3
4,117,911	+		HER17_RS18275	0.50	-0.3
4,117,912	-		HER17_RS18275	0.50	+0.6
4,117,912	-		HER17_RS18275	0.50	-0.3
4,117,912	-		HER17_RS18275	0.50	+0.6
4,117,912	-		HER17_RS18275	0.50	+0.1
4,117,912	-		HER17_RS18275	0.50	+1.7
4,117,912	-		HER17_RS18275	0.50	+0.6
4,117,912	-		HER17_RS18275	0.50	-0.7
4,117,912	-		HER17_RS18275	0.50	-0.4
4,117,912	-		HER17_RS18275	0.50	-0.5
4,117,914	-		HER17_RS18275	0.50	+0.1
4,117,914	-		HER17_RS18275	0.50	-0.2
4,117,947	+		HER17_RS18275	0.50	+1.1
4,117,948	-		HER17_RS18275	0.50	-0.3
4,117,948	-		HER17_RS18275	0.50	+0.0
4,117,948	-		HER17_RS18275	0.50	+0.2
4,118,054	+		HER17_RS18275	0.52	+0.2
4,118,055	-		HER17_RS18275	0.52	+0.8
4,118,055	-		HER17_RS18275	0.52	-0.1
4,118,112	+		HER17_RS18275	0.53	-0.8
4,118,112	+		HER17_RS18275	0.53	+0.7
4,118,112	+		HER17_RS18275	0.53	+0.3
4,118,112	+		HER17_RS18275	0.53	+0.5
4,118,112	+		HER17_RS18275	0.53	+1.2
4,118,113	-		HER17_RS18275	0.53	+0.5
4,118,113	-		HER17_RS18275	0.53	+0.1
4,118,125	+		HER17_RS18275	0.54	-0.2
4,118,125	+		HER17_RS18275	0.54	+1.1
4,118,126	-		HER17_RS18275	0.54	+0.2
4,118,126	-		HER17_RS18275	0.54	-0.5
4,118,126	-		HER17_RS18275	0.54	-1.2
4,118,143	-		HER17_RS18275	0.54	+0.9
4,118,179	+		HER17_RS18275	0.55	-1.2
4,118,179	+		HER17_RS18275	0.55	-1.7
4,118,199	+		HER17_RS18275	0.55	+0.4
4,118,199	+		HER17_RS18275	0.55	+1.1
4,118,200	-		HER17_RS18275	0.55	-0.0
4,118,250	+		HER17_RS18275	0.56	+0.7
4,118,250	+		HER17_RS18275	0.56	+0.0
4,118,250	+		HER17_RS18275	0.56	+0.4
4,118,250	+		HER17_RS18275	0.56	+0.5
4,118,251	-		HER17_RS18275	0.56	-0.0
4,118,251	-		HER17_RS18275	0.56	+0.1
4,118,251	-		HER17_RS18275	0.56	-0.4
4,118,251	-		HER17_RS18275	0.56	+0.3
4,118,277	+		HER17_RS18275	0.56	+0.1
4,118,278	-		HER17_RS18275	0.56	+0.9
4,118,430	+		HER17_RS18275	0.59	+0.8
4,118,430	+		HER17_RS18275	0.59	+1.3
4,118,440	-		HER17_RS18275	0.59	+1.1
4,118,477	+		HER17_RS18275	0.60	-0.3
4,118,554	+		HER17_RS18275	0.61	+1.1
4,118,554	+		HER17_RS18275	0.61	-0.5
4,118,555	-		HER17_RS18275	0.61	+0.3
4,118,593	-		HER17_RS18275	0.62	-0.1
4,118,593	-		HER17_RS18275	0.62	-0.5
4,118,630	-		HER17_RS18275	0.63	-0.1
4,118,658	+		HER17_RS18275	0.63	-0.9
4,118,658	+		HER17_RS18275	0.63	-0.1
4,118,695	+		HER17_RS18275	0.64	-0.5
4,118,696	-		HER17_RS18275	0.64	+0.6
4,118,696	-		HER17_RS18275	0.64	-0.2
4,118,696	-		HER17_RS18275	0.64	-0.2
4,118,745	+		HER17_RS18275	0.65	+0.9
4,118,746	-		HER17_RS18275	0.65	+1.0
4,118,813	+		HER17_RS18275	0.66	+0.2
4,118,813	+		HER17_RS18275	0.66	-0.4
4,118,867	-		HER17_RS18275	0.67	+0.0
4,118,896	-		HER17_RS18275	0.68	-1.3
4,119,084	-		HER17_RS18275	0.71	+0.7
4,119,098	+		HER17_RS18275	0.71	+1.3
4,119,098	+		HER17_RS18275	0.71	+0.3
4,119,098	+		HER17_RS18275	0.71	-0.1
4,119,098	+		HER17_RS18275	0.71	+1.7
4,119,099	-		HER17_RS18275	0.71	-0.9
4,119,099	-		HER17_RS18275	0.71	-0.4
4,119,101	+		HER17_RS18275	0.71	+0.2
4,119,102	-		HER17_RS18275	0.71	+0.2
4,119,102	-		HER17_RS18275	0.71	-0.2
4,119,155	+		HER17_RS18275	0.72	+0.3
4,119,357	+		HER17_RS18275	0.76	-0.9
4,119,357	+		HER17_RS18275	0.76	+1.5
4,119,357	+		HER17_RS18275	0.76	+1.1
4,119,358	-		HER17_RS18275	0.76	+1.1
4,119,358	-		HER17_RS18275	0.76	+0.6
4,119,442	+		HER17_RS18275	0.78	+0.8
4,119,473	+		HER17_RS18275	0.78	+0.2
4,119,473	+		HER17_RS18275	0.78	+0.5
4,119,528	+		HER17_RS18275	0.79	-2.2
4,119,528	+		HER17_RS18275	0.79	+0.5
4,119,528	+		HER17_RS18275	0.79	+0.2
4,119,528	+		HER17_RS18275	0.79	+0.5
4,119,529	-		HER17_RS18275	0.79	-0.5
4,119,531	-		HER17_RS18275	0.79	+0.9
4,119,559	+		HER17_RS18275	0.80	-1.5
4,119,560	-		HER17_RS18275	0.80	+1.1
4,119,873	-		HER17_RS18275	0.85	+0.4
4,119,947	+		HER17_RS18275	0.87	-0.3
4,119,948	-		HER17_RS18275	0.87	-0.1
4,119,976	-		HER17_RS18275	0.87	+0.2
4,120,201	+				+0.7
4,120,202	-				+0.0
4,120,326	+				+0.2
4,120,374	-				-1.1
4,120,392	+				-0.9
4,120,392	+				-0.4
4,120,392	+				-0.4
4,120,419	+				+0.6
4,120,511	+				-2.1
4,120,511	+				+0.4
4,120,512	-				-0.1
4,120,544	-				-1.7
4,120,570	+				+0.3
4,120,571	-				-0.0
4,120,660	+				+1.1
4,120,660	+				+0.1
4,120,660	+				+0.0
4,120,693	-				-0.2
4,120,693	-				-0.0
4,120,719	+				+0.2
4,120,719	+				-2.4
4,120,884	+				-0.1
4,120,884	+				+0.5
4,120,956	-				-0.1
4,120,967	+				+1.2
4,120,967	+				+0.3
4,121,137	+				+0.6
4,121,138	-				+0.4
4,121,171	+		HER17_RS18280	0.10	-1.2
4,121,172	-		HER17_RS18280	0.10	-0.0
4,121,237	+		HER17_RS18280	0.12	-0.1
4,121,238	-		HER17_RS18280	0.12	+0.1
4,121,238	-		HER17_RS18280	0.12	-1.8
4,121,238	-		HER17_RS18280	0.12	-0.1
4,121,246	-		HER17_RS18280	0.12	-0.1
4,121,265	-		HER17_RS18280	0.13	+0.5
4,121,265	-		HER17_RS18280	0.13	+0.1
4,121,270	+		HER17_RS18280	0.13	+1.7
4,121,270	+		HER17_RS18280	0.13	+0.8
4,121,270	+		HER17_RS18280	0.13	-0.4
4,121,270	+		HER17_RS18280	0.13	+0.4
4,121,299	+		HER17_RS18280	0.13	-0.1
4,121,299	+		HER17_RS18280	0.13	+0.3
4,121,300	-		HER17_RS18280	0.13	+0.8
4,121,300	-		HER17_RS18280	0.13	+0.3
4,121,300	-		HER17_RS18280	0.13	+1.1
4,121,300	-		HER17_RS18280	0.13	+0.4
4,121,379	+		HER17_RS18280	0.15	-0.5
4,121,411	+		HER17_RS18280	0.16	-0.2
4,121,412	-		HER17_RS18280	0.16	-0.5
4,121,436	-		HER17_RS18280	0.17	-1.1
4,121,436	-		HER17_RS18280	0.17	+0.0
4,121,436	-		HER17_RS18280	0.17	-0.5
4,121,437	+		HER17_RS18280	0.17	-0.5
4,121,437	+		HER17_RS18280	0.17	-0.1
4,121,438	-		HER17_RS18280	0.17	+0.7
4,121,522	+		HER17_RS18280	0.19	+0.5
4,121,598	+		HER17_RS18280	0.21	-0.2
4,121,654	+		HER17_RS18280	0.22	-0.8
4,121,655	-		HER17_RS18280	0.22	-0.4
4,121,655	-		HER17_RS18280	0.22	-0.2
4,121,671	+		HER17_RS18280	0.23	-0.8