Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17790

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,014,189	-		HER17_RS17785	0.33	-0.1
4,014,266	+		HER17_RS17785	0.42	+0.4
4,014,312	+		HER17_RS17785	0.47	-0.2
4,014,330	-		HER17_RS17785	0.49	+0.6
4,014,330	-		HER17_RS17785	0.49	-0.2
4,014,330	-		HER17_RS17785	0.49	-0.0
4,014,333	-		HER17_RS17785	0.49	-0.7
4,014,333	-		HER17_RS17785	0.49	-1.6
4,014,346	+		HER17_RS17785	0.50	-1.0
4,014,346	+		HER17_RS17785	0.50	+0.1
4,014,346	+		HER17_RS17785	0.50	-0.1
4,014,347	-		HER17_RS17785	0.51	+0.5
4,014,347	-		HER17_RS17785	0.51	+0.1
4,014,404	+		HER17_RS17785	0.57	-0.0
4,014,404	+		HER17_RS17785	0.57	-1.2
4,014,405	-		HER17_RS17785	0.57	+0.5
4,014,456	+		HER17_RS17785	0.62	-2.5
4,014,456	+		HER17_RS17785	0.62	+0.6
4,014,457	-		HER17_RS17785	0.62	-0.2
4,014,457	-		HER17_RS17785	0.62	-0.1
4,014,457	-		HER17_RS17785	0.62	+0.1
4,014,560	+		HER17_RS17785	0.74	+1.6
4,014,717	+				+0.3
4,014,718	-				-0.2
4,014,771	+				+0.1
4,014,783	-				-0.3
4,014,806	+				-0.5
4,014,807	-				-0.1
4,014,807	-				+0.0
4,014,817	-				-1.7
4,014,817	-				+0.3
4,014,840	-				-0.9
4,014,840	-				+0.1
4,014,861	+				+0.3
4,014,861	+				+0.4
4,014,867	+				+0.5
4,014,867	+				-0.5
4,014,867	+				-0.6
4,014,867	+				+0.0
4,014,867	+				+0.1
4,014,867	+				-0.3
4,014,868	-				-0.4
4,014,868	-				-0.9
4,014,868	-				-0.3
4,014,868	-				-0.1
4,014,868	-				+0.3
4,014,879	+				-0.1
4,014,879	+				+0.4
4,014,879	+				+0.1
4,014,880	-				+0.1
4,014,880	-				+1.4
4,014,880	-				-0.9
4,014,880	-				+0.5
4,014,880	-				-0.2
4,014,885	+				-0.5
4,014,886	-				+0.1
4,014,941	+				-0.3
4,015,034	-				+0.4
4,015,037	-				+0.4
4,015,068	+				+0.6
4,015,069	-				-1.2
4,015,069	-				+0.2
4,015,100	-				-1.5
4,015,159	+				+0.4
4,015,160	-				+0.9
4,015,209	+				-0.2
4,015,210	-				-0.9
4,015,270	-				+0.9
4,015,285	-				-0.4
4,015,311	+		HER17_RS17790	0.12	+0.7
4,015,311	+		HER17_RS17790	0.12	+0.3
4,015,311	+		HER17_RS17790	0.12	+0.9
4,015,311	+		HER17_RS17790	0.12	-0.7
4,015,311	+		HER17_RS17790	0.12	+0.4
4,015,311	+		HER17_RS17790	0.12	+0.2
4,015,354	+		HER17_RS17790	0.16	-0.3
4,015,355	-		HER17_RS17790	0.16	-0.2
4,015,391	+		HER17_RS17790	0.20	+1.1
4,015,419	+		HER17_RS17790	0.22	-0.2
4,015,454	+		HER17_RS17790	0.26	+1.3
4,015,455	-		HER17_RS17790	0.26	-0.0
4,015,455	-		HER17_RS17790	0.26	+1.3
4,015,455	-		HER17_RS17790	0.26	+0.3
4,015,455	-		HER17_RS17790	0.26	-0.4
4,015,470	+		HER17_RS17790	0.27	+1.5
4,015,509	+		HER17_RS17790	0.31	+0.3
4,015,551	-		HER17_RS17790	0.35	-0.4
4,015,574	+		HER17_RS17790	0.37	-0.3
4,015,574	+		HER17_RS17790	0.37	+0.5
4,015,578	-		HER17_RS17790	0.37	+1.1
4,015,586	+		HER17_RS17790	0.38	+0.4
4,015,586	+		HER17_RS17790	0.38	-0.7
4,015,586	+		HER17_RS17790	0.38	-1.2
4,015,587	-		HER17_RS17790	0.38	+0.5
4,015,587	-		HER17_RS17790	0.38	-0.6
4,015,667	+		HER17_RS17790	0.46	-1.1
4,015,729	-		HER17_RS17790	0.51	+0.2
4,015,768	+		HER17_RS17790	0.55	-0.4
4,015,923	+		HER17_RS17790	0.70	+0.6
4,015,923	+		HER17_RS17790	0.70	+0.3
4,015,924	-		HER17_RS17790	0.70	-0.7
4,015,924	-		HER17_RS17790	0.70	+0.2
4,015,969	+		HER17_RS17790	0.74	-0.3
4,015,969	+		HER17_RS17790	0.74	+0.5
4,015,969	+		HER17_RS17790	0.74	+0.9
4,015,972	-		HER17_RS17790	0.74	+0.2
4,015,982	-		HER17_RS17790	0.75	-0.7
4,015,982	-		HER17_RS17790	0.75	-0.0
4,016,068	-		HER17_RS17790	0.83	-0.7
4,016,068	-		HER17_RS17790	0.83	-1.6
4,016,110	+		HER17_RS17790	0.87	+0.0
4,016,110	+		HER17_RS17790	0.87	+0.7
4,016,110	+		HER17_RS17790	0.87	+0.6
4,016,110	+		HER17_RS17790	0.87	+0.5
4,016,111	-		HER17_RS17790	0.87	-0.7
4,016,111	-		HER17_RS17790	0.87	+1.6
4,016,111	-		HER17_RS17790	0.87	-0.8
4,016,207	+				+1.0
4,016,262	-				+0.6
4,016,286	+				-0.2
4,016,286	+				+0.2
4,016,287	-				-0.5
4,016,287	-				+0.9
4,016,287	-				-0.5
4,016,287	-				-0.8
4,016,287	-				+0.7
4,016,287	-				+1.1
4,016,287	-				-0.0
4,016,302	-				-0.5
4,016,318	+				-0.1
4,016,318	+				-1.3
4,016,319	-				+0.1
4,016,319	-				-0.6
4,016,319	-				-2.5
4,016,329	+				+0.3
4,016,329	+				+0.8
4,016,330	-				-0.2
4,016,345	-				-0.2
4,016,404	-				-0.6
4,016,457	+		HER17_RS17795	0.19	+0.5
4,016,458	-		HER17_RS17795	0.20	+0.8
4,016,531	+		HER17_RS17795	0.38	+1.0
4,016,531	+		HER17_RS17795	0.38	-0.2
4,016,531	+		HER17_RS17795	0.38	+0.5
4,016,531	+		HER17_RS17795	0.38	-0.1
4,016,532	-		HER17_RS17795	0.38	+0.1
4,016,532	-		HER17_RS17795	0.38	+0.4
4,016,532	-		HER17_RS17795	0.38	+1.2
4,016,532	-		HER17_RS17795	0.38	-0.2
4,016,532	-		HER17_RS17795	0.38	+0.3
4,016,563	+		HER17_RS17795	0.46	-0.3
4,016,627	+		HER17_RS17795	0.63	+0.4
4,016,628	-		HER17_RS17795	0.63	+0.2
4,016,628	-		HER17_RS17795	0.63	-0.5
4,016,629	+		HER17_RS17795	0.63	+0.7
4,016,630	-		HER17_RS17795	0.63	+1.7
4,016,630	-		HER17_RS17795	0.63	-0.9
4,016,688	+		HER17_RS17795	0.78	+0.3
4,016,746	+				-0.6
4,016,773	+				-0.3
4,016,774	-				+0.3
4,016,774	-				-0.5
4,016,774	-				+0.0
4,016,774	-				+0.5
4,016,774	-				+0.1
4,016,862	-				+1.1
4,016,868	-				+1.2
4,016,890	+				+0.5
4,016,891	-				+0.5
4,016,904	-				-0.2
4,016,904	-				+0.1
4,016,907	+				+0.1
4,016,907	+				-0.2
4,016,908	-				+1.5
4,016,908	-				+0.5
4,016,908	-				-1.0
4,016,908	-				+0.3
4,016,909	+				-0.7
4,016,909	+				-0.0
4,016,909	+				+0.7
4,016,913	+				-0.9
4,016,914	-				-1.5
4,016,934	-				+0.8
4,016,938	+				-0.5
4,016,939	-				+1.0
4,016,941	-				+0.1
4,016,941	-				-0.7
4,016,941	-				+0.6
4,016,941	-				-0.6
4,016,941	-				-0.7