Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17615

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,961,618	+				-0.1
3,961,728	-		HER17_RS17610	0.10	+0.1
3,961,728	-		HER17_RS17610	0.10	-1.0
3,961,783	-		HER17_RS17610	0.16	+0.3
3,961,811	-		HER17_RS17610	0.19	+0.6
3,961,913	-		HER17_RS17610	0.30	+0.7
3,961,967	+		HER17_RS17610	0.35	+1.5
3,961,967	+		HER17_RS17610	0.35	+0.2
3,961,967	+		HER17_RS17610	0.35	+0.6
3,961,968	-		HER17_RS17610	0.36	+0.5
3,962,014	+		HER17_RS17610	0.40	-0.2
3,962,014	+		HER17_RS17610	0.40	+0.0
3,962,014	+		HER17_RS17610	0.40	+0.2
3,962,014	+		HER17_RS17610	0.40	+0.0
3,962,014	+		HER17_RS17610	0.40	+0.2
3,962,014	+		HER17_RS17610	0.40	-1.5
3,962,014	+		HER17_RS17610	0.40	+0.6
3,962,015	-		HER17_RS17610	0.41	-2.0
3,962,015	-		HER17_RS17610	0.41	+0.2
3,962,015	-		HER17_RS17610	0.41	+0.9
3,962,265	+		HER17_RS17610	0.67	-0.7
3,962,266	-		HER17_RS17610	0.67	-0.6
3,962,266	-		HER17_RS17610	0.67	-1.0
3,962,266	-		HER17_RS17610	0.67	+0.4
3,962,284	+		HER17_RS17610	0.69	+1.3
3,962,375	+		HER17_RS17610	0.78	+0.4
3,962,376	-		HER17_RS17610	0.79	+0.1
3,962,376	-		HER17_RS17610	0.79	+0.1
3,962,387	+		HER17_RS17610	0.80	+0.4
3,962,388	-		HER17_RS17610	0.80	-0.9
3,962,456	+		HER17_RS17610	0.87	-0.4
3,962,457	-		HER17_RS17610	0.87	-0.0
3,962,505	+				+1.7
3,962,505	+				-0.5
3,962,506	-				+0.1
3,962,506	-				-0.1
3,962,506	-				-2.0
3,962,506	-				+0.1
3,962,506	-				+0.3
3,962,506	-				-0.1
3,962,518	-				+0.6
3,962,535	+				+1.1
3,962,536	-				+0.5
3,962,536	-				+0.2
3,962,563	+				-0.2
3,962,564	-				-0.1
3,962,567	-				-0.7
3,962,567	-				+0.2
3,962,578	+				-0.4
3,962,578	+				-1.0
3,962,578	+				-0.1
3,962,593	+				+1.2
3,962,593	+				+0.3
3,962,621	+				+1.4
3,962,673	-		HER17_RS17615	0.19	-0.1
3,962,773	-		HER17_RS17615	0.38	+0.2
3,962,822	-		HER17_RS17615	0.47	+0.3
3,962,831	+		HER17_RS17615	0.49	+0.0
3,962,850	+		HER17_RS17615	0.52	-0.9
3,962,850	+		HER17_RS17615	0.52	-0.4
3,962,850	+		HER17_RS17615	0.52	+0.3
3,962,850	+		HER17_RS17615	0.52	+0.3
3,962,947	+		HER17_RS17615	0.71	-0.6
3,962,947	+		HER17_RS17615	0.71	+0.7
3,962,948	-		HER17_RS17615	0.71	+0.4
3,962,955	+		HER17_RS17615	0.72	+1.3
3,963,038	+		HER17_RS17615	0.88	-0.5
3,963,039	-		HER17_RS17615	0.88	-0.7
3,963,039	-		HER17_RS17615	0.88	-1.0
3,963,039	-		HER17_RS17615	0.88	+1.4
3,963,039	-		HER17_RS17615	0.88	-0.9
3,963,164	+				+0.2
3,963,174	+				-0.1
3,963,174	+				+0.6
3,963,214	+				+0.6
3,963,215	-				+0.1
3,963,215	-				-0.6
3,963,215	-				-0.0
3,963,215	-				-0.8
3,963,215	-				-0.1
3,963,215	-				+0.9
3,963,215	-				+0.4
3,963,215	-				-1.0
3,963,272	+				+0.7
3,963,273	-				+0.4
3,963,317	+				-0.1
3,963,320	+				+0.8
3,963,329	+				-0.4
3,963,329	+				+0.1
3,963,329	+				-0.1
3,963,329	+				-0.0
3,963,329	+				+0.6
3,963,330	-				+1.0
3,963,330	-				+1.9
3,963,330	-				-0.0
3,963,330	-				-0.6
3,963,333	+				+0.2
3,963,334	-				+1.8
3,963,347	+				+1.0
3,963,348	-				+0.2
3,963,432	+				-0.1
3,963,432	+				-0.1
3,963,433	-				-1.3
3,963,433	-				+1.5
3,963,433	-				+0.3
3,963,433	-				-0.1
3,963,434	+				+0.3
3,963,434	+				+0.8
3,963,434	+				+0.8
3,963,434	+				+0.8
3,963,435	-				+0.2
3,963,435	-				+1.0
3,963,435	-				-0.1
3,963,477	-				-0.4
3,963,491	+				-0.5
3,963,491	+				+1.1
3,963,511	-		HER17_RS17620	0.10	+0.3
3,963,514	+		HER17_RS17620	0.10	+1.5
3,963,514	+		HER17_RS17620	0.10	+0.5
3,963,515	-		HER17_RS17620	0.10	+0.8
3,963,515	-		HER17_RS17620	0.10	-0.0
3,963,515	-		HER17_RS17620	0.10	-0.5
3,963,515	-		HER17_RS17620	0.10	+1.0
3,963,515	-		HER17_RS17620	0.10	+0.1
3,963,542	+		HER17_RS17620	0.11	+0.1
3,963,542	+		HER17_RS17620	0.11	+0.1
3,963,564	+		HER17_RS17620	0.12	-0.2
3,963,564	+		HER17_RS17620	0.12	-0.2
3,963,564	+		HER17_RS17620	0.12	-0.2
3,963,564	+		HER17_RS17620	0.12	-0.5
3,963,564	+		HER17_RS17620	0.12	+0.3
3,963,564	+		HER17_RS17620	0.12	+0.6
3,963,565	-		HER17_RS17620	0.12	+0.4
3,963,565	-		HER17_RS17620	0.12	+0.6
3,963,565	-		HER17_RS17620	0.12	-1.2
3,963,565	-		HER17_RS17620	0.12	+0.7
3,963,565	-		HER17_RS17620	0.12	-0.4
3,963,583	+		HER17_RS17620	0.13	-0.1
3,963,638	+		HER17_RS17620	0.15	+1.0
3,963,638	+		HER17_RS17620	0.15	+1.3
3,963,639	-		HER17_RS17620	0.16	-1.1
3,963,639	-		HER17_RS17620	0.16	+0.6
3,963,639	-		HER17_RS17620	0.16	-0.8
3,963,639	-		HER17_RS17620	0.16	-0.0
3,963,639	-		HER17_RS17620	0.16	+0.3
3,963,639	-		HER17_RS17620	0.16	+0.2
3,963,639	-		HER17_RS17620	0.16	+1.8
3,963,639	-		HER17_RS17620	0.16	+1.4
3,963,639	-		HER17_RS17620	0.16	+0.5
3,963,639	-		HER17_RS17620	0.16	-0.2
3,963,639	-		HER17_RS17620	0.16	+0.8
3,963,644	+		HER17_RS17620	0.16	+0.7
3,963,645	-		HER17_RS17620	0.16	+1.5
3,963,671	+		HER17_RS17620	0.17	-2.2
3,963,672	-		HER17_RS17620	0.17	+0.1
3,963,672	-		HER17_RS17620	0.17	-0.2
3,963,672	-		HER17_RS17620	0.17	+0.2
3,963,729	+		HER17_RS17620	0.19	-0.5
3,963,729	+		HER17_RS17620	0.19	+0.9
3,963,729	+		HER17_RS17620	0.19	+0.3
3,963,730	-		HER17_RS17620	0.19	+0.7
3,963,730	-		HER17_RS17620	0.19	+0.3
3,963,730	-		HER17_RS17620	0.19	-0.3
3,963,733	+		HER17_RS17620	0.19	-0.2
3,963,734	-		HER17_RS17620	0.20	-0.0
3,963,747	+		HER17_RS17620	0.20	+0.2
3,963,783	+		HER17_RS17620	0.22	-0.8
3,963,804	-		HER17_RS17620	0.22	-0.3
3,963,826	-		HER17_RS17620	0.23	-1.6
3,963,826	-		HER17_RS17620	0.23	+0.4
3,963,827	+		HER17_RS17620	0.23	+0.1
3,963,827	+		HER17_RS17620	0.23	+0.2
3,963,827	+		HER17_RS17620	0.23	+0.2
3,963,828	-		HER17_RS17620	0.24	-0.0
3,963,869	+		HER17_RS17620	0.25	+0.1
3,963,869	+		HER17_RS17620	0.25	+0.2
3,963,869	+		HER17_RS17620	0.25	+0.5
3,963,869	+		HER17_RS17620	0.25	+0.6
3,963,869	+		HER17_RS17620	0.25	-0.0
3,963,869	+		HER17_RS17620	0.25	+0.8
3,963,869	+		HER17_RS17620	0.25	-0.5
3,963,869	+		HER17_RS17620	0.25	+0.5
3,963,870	-		HER17_RS17620	0.25	-0.2
3,963,870	-		HER17_RS17620	0.25	-1.1
3,963,870	-		HER17_RS17620	0.25	+0.8
3,963,870	-		HER17_RS17620	0.25	+0.3
3,963,870	-		HER17_RS17620	0.25	-0.1
3,963,870	-		HER17_RS17620	0.25	-0.1
3,963,929	+		HER17_RS17620	0.28	-0.9
3,963,939	+		HER17_RS17620	0.28	+1.0
3,963,940	-		HER17_RS17620	0.28	-1.1
3,963,957	-		HER17_RS17620	0.29	-1.3
3,963,957	-		HER17_RS17620	0.29	-0.3
3,963,957	-		HER17_RS17620	0.29	-0.7
3,963,961	+		HER17_RS17620	0.29	+0.6
3,964,050	-		HER17_RS17620	0.33	-0.2
3,964,050	-		HER17_RS17620	0.33	-0.1
3,964,085	+		HER17_RS17620	0.34	-1.7
3,964,086	-		HER17_RS17620	0.34	+0.5
3,964,086	-		HER17_RS17620	0.34	-0.0