Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS16300 and HER17_RS16305 are separated by 21 nucleotides HER17_RS16305 and HER17_RS16310 are separated by 9 nucleotides HER17_RS16310 and HER17_RS16315 are separated by 198 nucleotides
HER17_RS16300: HER17_RS16300 - sigma E protease regulator RseP, at 3,678,830 to 3,680,185
_RS16300
HER17_RS16305: HER17_RS16305 - phosphatidate cytidylyltransferase, at 3,680,207 to 3,681,064
_RS16305
HER17_RS16310: HER17_RS16310 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,681,074 to 3,681,835
_RS16310
HER17_RS16315: HER17_RS16315 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,682,034 to 3,683,230
_RS16315
Position (kb)
3681
3682 Strain fitness (log2 ratio)
-1
0
1 at 3680.186 kb on - strand at 3680.186 kb on - strand at 3680.190 kb on - strand at 3680.190 kb on - strand at 3680.196 kb on - strand at 3680.209 kb on - strand at 3680.219 kb on - strand at 3681.095 kb on - strand at 3681.095 kb on - strand at 3681.095 kb on - strand at 3681.866 kb on - strand at 3681.986 kb on - strand at 3681.988 kb on - strand at 3681.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 3,680,186 - -0.1 3,680,186 - +0.4 3,680,190 - +1.0 3,680,190 - +0.3 3,680,196 - +0.1 3,680,209 - +1.3 3,680,219 - -0.5 3,681,095 - -0.4 3,681,095 - +0.1 3,681,095 - +1.7 3,681,866 - +0.1 3,681,986 - +0.4 3,681,988 - +0.7 3,681,988 - -0.3
Or see this region's nucleotide sequence