Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14480

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,256,637	+		HER17_RS14475	0.41	+0.3
3,256,646	-		HER17_RS14475	0.41	+0.8
3,256,687	-		HER17_RS14475	0.44	-0.1
3,256,744	+		HER17_RS14475	0.47	+0.3
3,256,762	-		HER17_RS14475	0.48	+1.7
3,256,776	-		HER17_RS14475	0.49	+0.6
3,256,776	-		HER17_RS14475	0.49	+0.7
3,256,950	-		HER17_RS14475	0.60	+0.6
3,257,001	+		HER17_RS14475	0.63	+0.4
3,257,061	+		HER17_RS14475	0.67	+0.3
3,257,061	+		HER17_RS14475	0.67	-2.2
3,257,086	-		HER17_RS14475	0.68	+0.0
3,257,088	+		HER17_RS14475	0.68	+0.9
3,257,088	+		HER17_RS14475	0.68	+0.1
3,257,146	+		HER17_RS14475	0.72	+1.1
3,257,147	-		HER17_RS14475	0.72	+0.2
3,257,147	-		HER17_RS14475	0.72	+0.8
3,257,147	-		HER17_RS14475	0.72	+0.1
3,257,149	+		HER17_RS14475	0.72	+0.2
3,257,170	+		HER17_RS14475	0.73	-0.3
3,257,170	+		HER17_RS14475	0.73	-0.2
3,257,170	+		HER17_RS14475	0.73	+0.1
3,257,170	+		HER17_RS14475	0.73	+0.3
3,257,171	-		HER17_RS14475	0.73	-0.3
3,257,362	+		HER17_RS14475	0.85	-0.9
3,257,362	+		HER17_RS14475	0.85	+0.1
3,257,363	-		HER17_RS14475	0.85	-0.0
3,257,363	-		HER17_RS14475	0.85	+0.9
3,257,451	+				-0.3
3,257,452	-				+1.4
3,257,472	-				-0.0
3,257,472	-				+1.2
3,257,474	+				+0.1
3,257,474	+				+0.7
3,257,475	-				+0.2
3,257,475	-				-0.8
3,257,475	-				+0.4
3,257,475	-				+1.1
3,257,493	+				+0.5
3,257,494	-				-1.5
3,257,494	-				+0.3
3,257,517	+				+1.2
3,257,590	+				-0.4
3,257,598	-				+1.0
3,257,624	+				-0.6
3,257,661	-				-0.2
3,257,701	-		HER17_RS14480	0.14	-0.0
3,257,701	-		HER17_RS14480	0.14	+1.7
3,257,701	-		HER17_RS14480	0.14	-0.0
3,257,703	+		HER17_RS14480	0.14	-0.7
3,257,703	+		HER17_RS14480	0.14	+1.0
3,257,703	+		HER17_RS14480	0.14	+1.0
3,257,704	-		HER17_RS14480	0.15	+1.2
3,257,704	-		HER17_RS14480	0.15	+1.0
3,257,704	-		HER17_RS14480	0.15	-0.5
3,257,718	+		HER17_RS14480	0.17	+0.3
3,257,719	-		HER17_RS14480	0.17	+0.2
3,257,719	-		HER17_RS14480	0.17	-1.4
3,257,719	-		HER17_RS14480	0.17	+0.4
3,257,759	+		HER17_RS14480	0.24	+0.6
3,257,760	-		HER17_RS14480	0.25	+0.8
3,257,760	-		HER17_RS14480	0.25	-0.0
3,257,760	-		HER17_RS14480	0.25	-0.9
3,257,766	+		HER17_RS14480	0.26	-0.4
3,257,766	+		HER17_RS14480	0.26	+0.8
3,257,769	+		HER17_RS14480	0.26	-0.4
3,257,769	+		HER17_RS14480	0.26	+0.5
3,257,769	+		HER17_RS14480	0.26	-0.6
3,257,770	-		HER17_RS14480	0.26	-0.2
3,257,876	+		HER17_RS14480	0.45	-0.5
3,257,877	-		HER17_RS14480	0.46	-0.0
3,257,976	+		HER17_RS14480	0.63	+0.3
3,258,001	+		HER17_RS14480	0.68	+0.2
3,258,034	-		HER17_RS14480	0.74	-0.4
3,258,035	+		HER17_RS14480	0.74	+0.2
3,258,036	-		HER17_RS14480	0.74	-0.2
3,258,036	-		HER17_RS14480	0.74	+0.6
3,258,036	-		HER17_RS14480	0.74	+0.3
3,258,083	+		HER17_RS14480	0.82	+0.7
3,258,083	+		HER17_RS14480	0.82	+0.2
3,258,083	+		HER17_RS14480	0.82	+0.5
3,258,083	+		HER17_RS14480	0.82	+0.1
3,258,084	-		HER17_RS14480	0.83	-0.5
3,258,087	+		HER17_RS14480	0.83	-1.2
3,258,087	+		HER17_RS14480	0.83	-0.0
3,258,087	+		HER17_RS14480	0.83	+0.3
3,258,088	-		HER17_RS14480	0.83	+0.6
3,258,088	-		HER17_RS14480	0.83	+0.2
3,258,088	-		HER17_RS14480	0.83	-1.2
3,258,088	-		HER17_RS14480	0.83	-0.4
3,258,088	-		HER17_RS14480	0.83	-1.0
3,258,116	+		HER17_RS14480	0.88	-0.2
3,258,116	+		HER17_RS14480	0.88	+2.5
3,258,116	+		HER17_RS14480	0.88	+0.3
3,258,156	+				-0.0
3,258,168	+				+0.2
3,258,187	-				+0.6
3,258,187	-				+0.7
3,258,218	+				+0.7
3,258,218	+				+1.6
3,258,219	-				+0.2
3,258,219	-				+0.5
3,258,219	-				-0.0
3,258,219	-				-1.0
3,258,225	-				+0.5
3,258,232	+				-0.0
3,258,232	+				+0.3
3,258,232	+				+0.4
3,258,256	-				-0.7
3,258,256	-				+0.4
3,258,259	-				-0.1
3,258,327	+				-2.1
3,258,374	+				+0.5
3,258,428	+				+0.2
3,258,429	-				-0.4
3,258,573	+				+0.1
3,258,573	+				-1.4
3,258,574	-				+0.4
3,258,591	+				-0.0
3,258,591	+				+0.4
3,258,592	-				+0.6
3,258,592	-				-0.3
3,258,708	+				+0.0
3,258,708	+				-0.1
3,258,709	-				-0.7
3,258,709	-				+0.6
3,258,709	-				-0.2
3,258,709	-				+1.8
3,258,738	+				+0.4
3,258,738	+				+0.2
3,258,784	+				-0.4
3,258,858	-		HER17_RS14485	0.13	+0.6
3,258,858	-		HER17_RS14485	0.13	+1.3
3,258,863	-		HER17_RS14485	0.14	-0.3
3,258,927	+		HER17_RS14485	0.17	+1.7
3,258,972	+		HER17_RS14485	0.19	+1.2
3,258,972	+		HER17_RS14485	0.19	+0.2
3,258,972	+		HER17_RS14485	0.19	-0.4
3,258,972	+		HER17_RS14485	0.19	+1.4
3,258,972	+		HER17_RS14485	0.19	+0.7
3,259,044	+		HER17_RS14485	0.22	-0.3
3,259,045	-		HER17_RS14485	0.22	+1.1
3,259,045	-		HER17_RS14485	0.22	-0.4
3,259,045	-		HER17_RS14485	0.22	+0.6
3,259,045	-		HER17_RS14485	0.22	-0.7
3,259,059	+		HER17_RS14485	0.23	-0.6
3,259,080	+		HER17_RS14485	0.24	+0.7
3,259,130	+		HER17_RS14485	0.26	+0.3
3,259,147	+		HER17_RS14485	0.27	+0.2
3,259,147	+		HER17_RS14485	0.27	+0.5
3,259,147	+		HER17_RS14485	0.27	-0.7
3,259,148	-		HER17_RS14485	0.27	-0.1
3,259,148	-		HER17_RS14485	0.27	+2.9
3,259,148	-		HER17_RS14485	0.27	+0.4
3,259,148	-		HER17_RS14485	0.27	+0.1
3,259,148	-		HER17_RS14485	0.27	-0.2
3,259,152	+		HER17_RS14485	0.27	+0.5
3,259,152	+		HER17_RS14485	0.27	+1.2
3,259,152	+		HER17_RS14485	0.27	+0.2
3,259,152	+		HER17_RS14485	0.27	-0.7
3,259,152	+		HER17_RS14485	0.27	-0.4
3,259,152	+		HER17_RS14485	0.27	-0.7
3,259,153	-		HER17_RS14485	0.27	+0.5