Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14350

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,224,666	+		HER17_RS14345	0.51	-0.2
3,224,681	-		HER17_RS14345	0.52	+0.2
3,224,681	-		HER17_RS14345	0.52	+0.2
3,224,681	-		HER17_RS14345	0.52	+0.1
3,224,681	-		HER17_RS14345	0.52	-0.2
3,224,743	-		HER17_RS14345	0.58	-0.5
3,224,743	-		HER17_RS14345	0.58	-0.9
3,224,761	+		HER17_RS14345	0.60	-1.2
3,224,794	-		HER17_RS14345	0.63	-0.6
3,224,794	-		HER17_RS14345	0.63	-0.4
3,224,825	+		HER17_RS14345	0.66	+1.4
3,224,825	+		HER17_RS14345	0.66	-1.6
3,224,825	+		HER17_RS14345	0.66	-2.5
3,224,826	-		HER17_RS14345	0.66	-0.2
3,224,826	-		HER17_RS14345	0.66	-0.8
3,224,827	+		HER17_RS14345	0.66	+0.6
3,224,827	+		HER17_RS14345	0.66	+0.2
3,224,827	+		HER17_RS14345	0.66	+0.0
3,224,827	+		HER17_RS14345	0.66	+0.5
3,224,828	-		HER17_RS14345	0.66	+0.4
3,224,828	-		HER17_RS14345	0.66	+0.0
3,224,828	-		HER17_RS14345	0.66	-0.5
3,224,828	-		HER17_RS14345	0.66	-1.2
3,224,828	-		HER17_RS14345	0.66	-1.0
3,224,828	-		HER17_RS14345	0.66	-0.8
3,224,844	+		HER17_RS14345	0.68	-0.3
3,224,844	+		HER17_RS14345	0.68	+0.4
3,224,845	-		HER17_RS14345	0.68	-0.4
3,224,849	-		HER17_RS14345	0.68	-1.9
3,224,864	+		HER17_RS14345	0.69	-0.8
3,224,864	+		HER17_RS14345	0.69	-0.4
3,224,864	+		HER17_RS14345	0.69	-0.1
3,224,864	+		HER17_RS14345	0.69	+1.0
3,224,864	+		HER17_RS14345	0.69	+1.0
3,224,865	-		HER17_RS14345	0.69	+0.6
3,224,871	+		HER17_RS14345	0.70	-1.1
3,224,871	+		HER17_RS14345	0.70	+0.9
3,224,872	-		HER17_RS14345	0.70	-1.0
3,224,875	-		HER17_RS14345	0.70	-0.8
3,224,930	+		HER17_RS14345	0.76	-1.4
3,224,930	+		HER17_RS14345	0.76	+0.0
3,225,000	+		HER17_RS14345	0.82	-1.0
3,225,033	+		HER17_RS14345	0.85	+0.3
3,225,071	+		HER17_RS14345	0.89	-0.1
3,225,112	+				+1.6
3,225,112	+				-0.8
3,225,307	+				-0.7
3,225,370	-				+0.8
3,225,372	-				-0.8
3,225,379	+				-1.3
3,225,396	+				+1.1
3,225,434	-				+0.1
3,225,514	+				-0.4
3,225,515	-				+0.1
3,225,535	+				+0.8
3,225,535	+				-2.2
3,225,536	-				+0.4
3,225,536	-				+0.9
3,225,539	+				+0.8
3,225,630	+				-1.2
3,225,651	+				-2.0
3,225,652	-				-0.1
3,225,652	-				+0.3
3,225,652	-				+0.8
3,225,652	-				-0.5
3,225,652	-				-0.0
3,225,667	+				-0.2
3,225,667	+				-0.1
3,225,668	-				+0.9
3,225,668	-				-1.0
3,225,668	-				-0.0
3,225,668	-				-0.4
3,225,668	-				+0.3
3,225,727	-				-0.0
3,225,741	+				+0.0
3,225,741	+				+1.5
3,225,742	-				+0.6
3,225,763	+				-0.9
3,225,833	+		HER17_RS14350	0.11	+0.0
3,225,833	+		HER17_RS14350	0.11	+1.8
3,225,834	-		HER17_RS14350	0.11	-0.1
3,225,874	+		HER17_RS14350	0.13	-0.3
3,225,875	-		HER17_RS14350	0.13	-2.2
3,226,031	+		HER17_RS14350	0.21	+0.8
3,226,078	+		HER17_RS14350	0.24	-0.4
3,226,078	+		HER17_RS14350	0.24	+0.2
3,226,079	-		HER17_RS14350	0.24	+0.7
3,226,079	-		HER17_RS14350	0.24	-0.1
3,226,079	-		HER17_RS14350	0.24	-0.2
3,226,080	+		HER17_RS14350	0.24	+0.1
3,226,080	+		HER17_RS14350	0.24	+1.1
3,226,080	+		HER17_RS14350	0.24	-0.3
3,226,080	+		HER17_RS14350	0.24	-0.1
3,226,092	+		HER17_RS14350	0.25	-0.1
3,226,092	+		HER17_RS14350	0.25	+0.6
3,226,114	+		HER17_RS14350	0.26	+0.5
3,226,138	-		HER17_RS14350	0.27	+0.2
3,226,138	-		HER17_RS14350	0.27	-0.3
3,226,141	-		HER17_RS14350	0.27	-1.1
3,226,141	-		HER17_RS14350	0.27	-0.6
3,226,481	-		HER17_RS14350	0.46	+0.2
3,226,490	+		HER17_RS14350	0.46	+0.1
3,226,490	+		HER17_RS14350	0.46	+0.2
3,226,491	-		HER17_RS14350	0.46	+0.1
3,226,491	-		HER17_RS14350	0.46	-0.4
3,226,554	+		HER17_RS14350	0.49	+0.3
3,226,555	-		HER17_RS14350	0.50	+0.1
3,226,555	-		HER17_RS14350	0.50	+0.2
3,226,570	+		HER17_RS14350	0.50	-1.1
3,226,570	+		HER17_RS14350	0.50	+0.6
3,226,613	-		HER17_RS14350	0.53	+0.6
3,226,659	+		HER17_RS14350	0.55	-0.1
3,226,790	-		HER17_RS14350	0.62	-1.4
3,226,893	+		HER17_RS14350	0.68	+0.4
3,226,894	-		HER17_RS14350	0.68	-0.1
3,226,894	-		HER17_RS14350	0.68	-0.9
3,226,894	-		HER17_RS14350	0.68	+0.9
3,226,908	+		HER17_RS14350	0.68	-1.6
3,227,012	+		HER17_RS14350	0.74	+0.3
3,227,013	-		HER17_RS14350	0.74	+0.2
3,227,035	-		HER17_RS14350	0.75	+0.0
3,227,162	-		HER17_RS14350	0.82	+0.2
3,227,192	+		HER17_RS14350	0.84	-0.1
3,227,193	-		HER17_RS14350	0.84	-0.9
3,227,265	+		HER17_RS14350	0.88	+0.3
3,227,325	+				-1.1
3,227,326	-				-1.1
3,227,326	-				-0.1
3,227,326	-				-0.1
3,227,326	-				-0.2
3,227,335	-				+0.0
3,227,335	-				-0.7
3,227,494	+				+0.4
3,227,613	-				+0.6
3,227,643	+		HER17_RS14355	0.10	-1.2
3,227,675	+		HER17_RS14355	0.12	+0.1
3,227,934	+		HER17_RS14355	0.30	-0.8
3,227,964	+		HER17_RS14355	0.32	-1.0
3,227,965	-		HER17_RS14355	0.32	-0.1
3,227,965	-		HER17_RS14355	0.32	+0.3
3,228,004	+		HER17_RS14355	0.35	+0.1
3,228,034	-		HER17_RS14355	0.37	+0.6
3,228,034	-		HER17_RS14355	0.37	-0.3
3,228,035	+		HER17_RS14355	0.37	-1.0
3,228,036	-		HER17_RS14355	0.37	-0.0
3,228,036	-		HER17_RS14355	0.37	+0.1
3,228,080	+		HER17_RS14355	0.40	-0.3
3,228,153	-		HER17_RS14355	0.45	-0.1
3,228,156	+		HER17_RS14355	0.45	-0.1
3,228,157	-		HER17_RS14355	0.45	-0.8
3,228,157	-		HER17_RS14355	0.45	-1.2
3,228,265	-		HER17_RS14355	0.53	+0.2
3,228,324	+		HER17_RS14355	0.57	+0.0
3,228,324	+		HER17_RS14355	0.57	+0.0
3,228,330	+		HER17_RS14355	0.57	+0.1
3,228,340	+		HER17_RS14355	0.58	-0.2
3,228,340	+		HER17_RS14355	0.58	+0.0
3,228,340	+		HER17_RS14355	0.58	+2.0
3,228,341	-		HER17_RS14355	0.58	-0.9
3,228,341	-		HER17_RS14355	0.58	-0.3
3,228,341	-		HER17_RS14355	0.58	+0.1
3,228,341	-		HER17_RS14355	0.58	-1.8
3,228,341	-		HER17_RS14355	0.58	+0.3
3,228,434	+		HER17_RS14355	0.64	-0.3
3,228,435	-		HER17_RS14355	0.64	-0.3
3,228,471	+		HER17_RS14355	0.67	-0.5
3,228,471	+		HER17_RS14355	0.67	-0.5
3,228,471	+		HER17_RS14355	0.67	+0.2
3,228,472	-		HER17_RS14355	0.67	-0.2
3,228,472	-		HER17_RS14355	0.67	+0.7
3,228,472	-		HER17_RS14355	0.67	+0.7
3,228,472	-		HER17_RS14355	0.67	+0.7
3,228,472	-		HER17_RS14355	0.67	-0.4
3,228,472	-		HER17_RS14355	0.67	-0.3