Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS10865

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,424,488	-		HER17_RS10860	0.55	-0.3
2,424,551	+		HER17_RS10860	0.65	-0.9
2,424,698	+		HER17_RS10860	0.88	+1.1
2,424,698	+		HER17_RS10860	0.88	+0.4
2,424,698	+		HER17_RS10860	0.88	+0.0
2,424,698	+		HER17_RS10860	0.88	-0.5
2,424,699	-		HER17_RS10860	0.88	+0.5
2,424,742	+				-1.8
2,424,742	+				+0.1
2,424,742	+				-0.6
2,424,742	+				+0.3
2,424,743	-				-0.3
2,424,743	-				+0.1
2,424,878	+				+0.9
2,424,879	-				-1.3
2,424,910	+				+0.4
2,424,951	+				-1.4
2,424,977	-				-1.1
2,425,057	+				+0.0
2,425,058	-				-1.1
2,425,058	-				-0.1
2,425,061	+				+0.7
2,425,061	+				-1.7
2,425,062	-				-0.5
2,425,062	-				+0.5
2,425,089	+				-0.4
2,425,093	+				-0.9
2,425,094	-				+0.8
2,425,100	-				+0.7
2,425,100	-				-0.5
2,425,100	-				-0.5
2,425,111	+				+0.4
2,425,120	+				-0.3
2,425,121	-				-0.9
2,425,131	-				+0.3
2,425,131	-				+0.3
2,425,131	-				+1.6
2,425,134	+				-0.0
2,425,171	-				-0.9
2,425,171	-				+0.6
2,425,209	+				+0.3
2,425,252	+				-0.5
2,425,341	+				-0.1
2,425,342	-				-1.7
2,425,342	-				+0.1
2,425,343	+				+0.5
2,425,343	+				+1.1
2,425,344	-				+0.7
2,425,344	-				-0.5
2,425,365	-				-0.2
2,425,368	+				+0.1
2,425,369	-				-0.5
2,425,529	-				+1.2
2,425,539	+				+0.8
2,425,567	+				-3.3
2,425,587	+				-0.0
2,425,587	+				+0.3
2,425,588	-				-0.8
2,425,597	+				-0.6
2,425,617	+		HER17_RS10865	0.11	-2.6
2,425,617	+		HER17_RS10865	0.11	-1.1
2,425,617	+		HER17_RS10865	0.11	-0.3
2,425,704	+		HER17_RS10865	0.17	+1.0
2,425,777	+		HER17_RS10865	0.21	-0.0
2,425,778	-		HER17_RS10865	0.21	+0.0
2,425,804	+		HER17_RS10865	0.23	+1.5
2,425,804	+		HER17_RS10865	0.23	-0.5
2,425,804	+		HER17_RS10865	0.23	-0.4
2,425,805	-		HER17_RS10865	0.23	+0.5
2,425,805	-		HER17_RS10865	0.23	+1.7
2,425,805	-		HER17_RS10865	0.23	+0.6
2,425,805	-		HER17_RS10865	0.23	-0.6
2,425,921	+		HER17_RS10865	0.31	-0.2
2,425,921	+		HER17_RS10865	0.31	-0.9
2,425,921	+		HER17_RS10865	0.31	-0.7
2,425,922	-		HER17_RS10865	0.31	+0.5
2,425,922	-		HER17_RS10865	0.31	-0.0
2,425,922	-		HER17_RS10865	0.31	+0.1
2,425,922	-		HER17_RS10865	0.31	+0.6
2,425,924	+		HER17_RS10865	0.31	+0.9
2,425,924	+		HER17_RS10865	0.31	+0.8
2,425,924	+		HER17_RS10865	0.31	+1.2
2,425,925	-		HER17_RS10865	0.31	+0.1
2,425,925	-		HER17_RS10865	0.31	-0.2
2,425,925	-		HER17_RS10865	0.31	-0.6
2,425,925	-		HER17_RS10865	0.31	-0.5
2,425,925	-		HER17_RS10865	0.31	+0.4
2,425,925	-		HER17_RS10865	0.31	+0.4
2,425,925	-		HER17_RS10865	0.31	+0.3
2,425,925	-		HER17_RS10865	0.31	+0.3
2,425,925	-		HER17_RS10865	0.31	+0.8
2,425,926	+		HER17_RS10865	0.31	-0.3
2,425,926	+		HER17_RS10865	0.31	-0.6
2,425,927	-		HER17_RS10865	0.31	-0.0
2,425,927	-		HER17_RS10865	0.31	-3.3
2,425,935	-		HER17_RS10865	0.32	+0.0
2,425,935	-		HER17_RS10865	0.32	-0.7
2,425,935	-		HER17_RS10865	0.32	-1.0
2,425,939	-		HER17_RS10865	0.32	-0.9
2,425,939	-		HER17_RS10865	0.32	+0.7
2,425,957	-		HER17_RS10865	0.33	-0.1
2,425,957	-		HER17_RS10865	0.33	-1.8
2,425,987	+		HER17_RS10865	0.35	-0.3
2,425,987	+		HER17_RS10865	0.35	+0.3
2,425,987	+		HER17_RS10865	0.35	+0.4
2,425,988	-		HER17_RS10865	0.35	-0.6
2,426,049	+		HER17_RS10865	0.39	+0.1
2,426,050	-		HER17_RS10865	0.39	+1.1
2,426,050	-		HER17_RS10865	0.39	+0.1
2,426,175	-		HER17_RS10865	0.48	+1.1
2,426,175	-		HER17_RS10865	0.48	-0.9
2,426,300	+		HER17_RS10865	0.56	+0.0
2,426,301	-		HER17_RS10865	0.56	+0.4
2,426,306	+		HER17_RS10865	0.56	+1.9
2,426,331	-		HER17_RS10865	0.58	-0.9
2,426,331	-		HER17_RS10865	0.58	-0.6
2,426,331	-		HER17_RS10865	0.58	+0.5
2,426,331	-		HER17_RS10865	0.58	+0.7
2,426,332	+		HER17_RS10865	0.58	+0.4
2,426,332	+		HER17_RS10865	0.58	+0.5
2,426,332	+		HER17_RS10865	0.58	-1.0
2,426,332	+		HER17_RS10865	0.58	-0.3
2,426,479	-		HER17_RS10865	0.68	-1.2
2,426,712	+		HER17_RS10865	0.83	-0.1
2,426,736	+		HER17_RS10865	0.85	-0.4
2,426,801	+		HER17_RS10865	0.89	+0.1
2,426,910	+				+0.2
2,426,932	-				+0.1
2,427,045	-				+0.1
2,427,073	-				+0.1
2,427,104	+				-0.5
2,427,105	-				-0.7
2,427,224	+		HER17_RS10870	0.12	-4.4
2,427,230	+		HER17_RS10870	0.13	-2.8
2,427,230	+		HER17_RS10870	0.13	-1.9
2,427,230	+		HER17_RS10870	0.13	-3.6
2,427,231	-		HER17_RS10870	0.13	-3.7
2,427,278	+		HER17_RS10870	0.18	-1.9
2,427,342	+		HER17_RS10870	0.25	-2.5
2,427,342	+		HER17_RS10870	0.25	-2.3
2,427,380	+		HER17_RS10870	0.28	-4.1
2,427,381	-		HER17_RS10870	0.29	-2.4
2,427,381	-		HER17_RS10870	0.29	-2.2
2,427,381	-		HER17_RS10870	0.29	-3.0
2,427,421	-		HER17_RS10870	0.33	-1.6
2,427,487	-		HER17_RS10870	0.39	-2.5
2,427,488	+		HER17_RS10870	0.39	-2.2
2,427,489	-		HER17_RS10870	0.40	-3.5
2,427,563	-		HER17_RS10870	0.47	-2.5
2,427,566	-		HER17_RS10870	0.47	-2.7
2,427,742	-		HER17_RS10870	0.66	-2.2
2,427,791	+		HER17_RS10870	0.71	-0.5
2,427,792	-		HER17_RS10870	0.71	-2.3
2,427,816	+		HER17_RS10870	0.73	-3.7
2,427,816	+		HER17_RS10870	0.73	-1.7
2,427,816	+		HER17_RS10870	0.73	-3.4
2,427,817	-		HER17_RS10870	0.73	-3.0
2,427,817	-		HER17_RS10870	0.73	-3.6
2,427,817	-		HER17_RS10870	0.73	-2.5
2,427,817	-		HER17_RS10870	0.73	-3.3
2,427,817	-		HER17_RS10870	0.73	-1.4
2,427,817	-		HER17_RS10870	0.73	-0.9