Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08690

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,906,495	-		HER17_RS08685	0.26	-0.7
1,906,510	+		HER17_RS08685	0.28	-0.7
1,906,588	+		HER17_RS08685	0.38	+0.3
1,906,589	-		HER17_RS08685	0.38	-1.7
1,906,642	-		HER17_RS08685	0.44	-0.4
1,906,677	+		HER17_RS08685	0.49	+0.7
1,906,678	-		HER17_RS08685	0.49	+0.6
1,906,698	+		HER17_RS08685	0.51	+0.3
1,906,698	+		HER17_RS08685	0.51	+1.2
1,906,698	+		HER17_RS08685	0.51	-0.2
1,906,804	+		HER17_RS08685	0.65	-0.6
1,906,804	+		HER17_RS08685	0.65	+0.3
1,906,804	+		HER17_RS08685	0.65	-0.4
1,906,804	+		HER17_RS08685	0.65	-0.7
1,906,804	+		HER17_RS08685	0.65	-0.3
1,906,804	+		HER17_RS08685	0.65	-0.6
1,906,804	+		HER17_RS08685	0.65	-1.4
1,906,805	-		HER17_RS08685	0.65	+0.1
1,906,805	-		HER17_RS08685	0.65	+0.5
1,906,805	-		HER17_RS08685	0.65	-1.0
1,906,805	-		HER17_RS08685	0.65	-0.5
1,906,805	-		HER17_RS08685	0.65	+0.9
1,906,806	+		HER17_RS08685	0.65	-0.7
1,906,807	-		HER17_RS08685	0.65	-0.8
1,906,954	+		HER17_RS08685	0.83	-0.6
1,906,955	-		HER17_RS08685	0.84	-1.0
1,906,955	-		HER17_RS08685	0.84	+0.1
1,906,955	-		HER17_RS08685	0.84	-2.0
1,906,955	-		HER17_RS08685	0.84	-0.7
1,906,959	-		HER17_RS08685	0.84	-0.1
1,906,976	-		HER17_RS08685	0.86	+0.7
1,906,976	-		HER17_RS08685	0.86	-0.1
1,906,976	-		HER17_RS08685	0.86	-0.0
1,907,084	-				+0.3
1,907,120	-				-0.8
1,907,348	+				-0.1
1,907,348	+				+0.3
1,907,349	-				-0.7
1,907,349	-				-0.7
1,907,349	-				-0.6
1,907,349	-				-2.1
1,907,349	-				+0.1
1,907,350	+				-0.3
1,907,350	+				+0.3
1,907,350	+				+0.5
1,907,351	-				+0.5
1,907,351	-				-1.0
1,907,357	+				-0.2
1,907,366	+				+1.1
1,907,376	-				-0.7
1,907,379	-				-0.4
1,907,398	+				-0.8
1,907,398	+				-0.9
1,907,399	-				-1.4
1,907,399	-				-1.1
1,907,434	-				-2.1
1,907,437	+				-0.9
1,907,437	+				-0.7
1,907,437	+				-0.9
1,907,438	-				+0.3
1,907,438	-				-1.4
1,907,438	-				-2.0
1,907,510	-				-1.4
1,907,614	+		HER17_RS08690	0.15	-2.1
1,907,614	+		HER17_RS08690	0.15	-1.4
1,907,617	+		HER17_RS08690	0.15	-2.2
1,907,654	+		HER17_RS08690	0.18	-1.3
1,907,655	-		HER17_RS08690	0.18	-1.3
1,907,675	-		HER17_RS08690	0.19	-1.6
1,907,701	+		HER17_RS08690	0.21	-1.8
1,907,702	-		HER17_RS08690	0.21	-3.5
1,907,706	+		HER17_RS08690	0.21	-1.5
1,907,786	+		HER17_RS08690	0.27	-0.7
1,907,787	-		HER17_RS08690	0.27	-2.1
1,907,787	-		HER17_RS08690	0.27	-0.5
1,907,788	+		HER17_RS08690	0.27	-1.2
1,907,788	+		HER17_RS08690	0.27	-1.4
1,907,788	+		HER17_RS08690	0.27	-1.0
1,907,789	-		HER17_RS08690	0.27	-2.1
1,907,789	-		HER17_RS08690	0.27	-0.9
1,907,789	-		HER17_RS08690	0.27	-0.9
1,907,789	-		HER17_RS08690	0.27	-0.6
1,907,789	-		HER17_RS08690	0.27	-0.3
1,907,804	+		HER17_RS08690	0.28	+1.0
1,907,926	+		HER17_RS08690	0.37	-0.1
1,907,940	+		HER17_RS08690	0.38	-3.8
1,907,990	+		HER17_RS08690	0.41	-0.6
1,907,991	-		HER17_RS08690	0.41	-0.7
1,907,991	-		HER17_RS08690	0.41	-0.7
1,907,991	-		HER17_RS08690	0.41	-0.9
1,908,045	+		HER17_RS08690	0.45	-0.8
1,908,045	+		HER17_RS08690	0.45	-1.6
1,908,116	+		HER17_RS08690	0.50	-0.7
1,908,116	+		HER17_RS08690	0.50	-2.1
1,908,117	-		HER17_RS08690	0.50	-1.1
1,908,117	-		HER17_RS08690	0.50	-0.8
1,908,117	-		HER17_RS08690	0.50	-0.8
1,908,117	-		HER17_RS08690	0.50	-0.8
1,908,166	+		HER17_RS08690	0.53	-1.5
1,908,193	+		HER17_RS08690	0.55	-1.2
1,908,193	+		HER17_RS08690	0.55	-0.8
1,908,199	+		HER17_RS08690	0.56	-2.5
1,908,332	+		HER17_RS08690	0.65	-2.2
1,908,332	+		HER17_RS08690	0.65	-0.2
1,908,401	-		HER17_RS08690	0.70	-1.0
1,908,401	-		HER17_RS08690	0.70	-0.9
1,908,401	-		HER17_RS08690	0.70	-2.3
1,908,477	+		HER17_RS08690	0.75	-0.8
1,908,477	+		HER17_RS08690	0.75	-1.5
1,908,477	+		HER17_RS08690	0.75	-1.4
1,908,478	-		HER17_RS08690	0.75	-1.9
1,908,488	+		HER17_RS08690	0.76	-1.6
1,908,488	+		HER17_RS08690	0.76	-0.8
1,908,489	-		HER17_RS08690	0.76	-0.5
1,908,500	+		HER17_RS08690	0.77	-1.3
1,908,501	-		HER17_RS08690	0.77	-2.1
1,908,617	-		HER17_RS08690	0.85	-1.1
1,908,697	+				-1.5
1,908,806	-				-1.0
1,908,815	+				-0.7
1,908,816	-				-0.6
1,908,832	-				+0.0
1,908,852	-				-0.2
1,908,967	+				-0.7
1,908,967	+				+0.1
1,908,968	-				-0.1
1,909,001	+		HER17_RS08695	0.14	+1.3
1,909,001	+		HER17_RS08695	0.14	-0.4
1,909,002	-		HER17_RS08695	0.14	-0.3
1,909,002	-		HER17_RS08695	0.14	+0.2
1,909,002	-		HER17_RS08695	0.14	-0.5
1,909,002	-		HER17_RS08695	0.14	+0.3
1,909,002	-		HER17_RS08695	0.14	+0.5
1,909,032	-		HER17_RS08695	0.17	-0.6
1,909,032	-		HER17_RS08695	0.17	-0.1
1,909,070	+		HER17_RS08695	0.22	+0.4
1,909,071	-		HER17_RS08695	0.22	+0.5
1,909,228	+		HER17_RS08695	0.42	-0.8
1,909,228	+		HER17_RS08695	0.42	-0.0
1,909,229	-		HER17_RS08695	0.42	+1.0
1,909,229	-		HER17_RS08695	0.42	+0.6
1,909,229	-		HER17_RS08695	0.42	+0.2
1,909,313	+		HER17_RS08695	0.53	-0.3
1,909,313	+		HER17_RS08695	0.53	+0.8
1,909,313	+		HER17_RS08695	0.53	-0.7
1,909,313	+		HER17_RS08695	0.53	+0.7
1,909,313	+		HER17_RS08695	0.53	+0.6
1,909,313	+		HER17_RS08695	0.53	+1.0
1,909,314	-		HER17_RS08695	0.53	-0.3
1,909,314	-		HER17_RS08695	0.53	+0.2
1,909,314	-		HER17_RS08695	0.53	+0.2
1,909,314	-		HER17_RS08695	0.53	+0.7
1,909,314	-		HER17_RS08695	0.53	+0.8
1,909,314	-		HER17_RS08695	0.53	-0.5
1,909,315	+		HER17_RS08695	0.53	+0.8
1,909,315	+		HER17_RS08695	0.53	+0.8
1,909,315	+		HER17_RS08695	0.53	-0.3
1,909,315	+		HER17_RS08695	0.53	+0.2
1,909,315	+		HER17_RS08695	0.53	-0.4
1,909,315	+		HER17_RS08695	0.53	-0.2
1,909,315	+		HER17_RS08695	0.53	-2.5
1,909,316	-		HER17_RS08695	0.53	-0.2
1,909,316	-		HER17_RS08695	0.53	+0.7
1,909,316	-		HER17_RS08695	0.53	+0.3
1,909,317	+		HER17_RS08695	0.53	+0.4
1,909,318	-		HER17_RS08695	0.53	-1.4
1,909,318	-		HER17_RS08695	0.53	+1.2
1,909,318	-		HER17_RS08695	0.53	-0.8
1,909,318	-		HER17_RS08695	0.53	-0.5
1,909,318	-		HER17_RS08695	0.53	-2.0
1,909,318	-		HER17_RS08695	0.53	+0.3
1,909,524	+		HER17_RS08695	0.79	+0.1
1,909,524	+		HER17_RS08695	0.79	+0.3
1,909,525	-		HER17_RS08695	0.79	+0.6
1,909,713	+				-0.8
1,909,730	-				-2.3
1,909,807	+				-0.3
1,909,807	+				+0.2
1,909,808	-				+0.1
1,909,808	-				+0.2
1,909,808	-				-0.8
1,909,808	-				-0.2
1,909,811	+				+0.7
1,909,811	+				-0.3
1,909,811	+				-0.7
1,909,811	+				+0.1
1,909,811	+				+0.7
1,909,811	+				-0.9
1,909,812	-				-0.2
1,909,812	-				-0.3
1,909,812	-				-0.8
1,909,812	-				+0.2
1,909,812	-				-0.7
1,909,812	-				-0.1