Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08100

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,789,649	-		HER17_RS08095	0.12	+1.0
1,789,649	-		HER17_RS08095	0.12	-2.0
1,789,670	+		HER17_RS08095	0.14	+1.3
1,789,684	+		HER17_RS08095	0.15	+0.4
1,789,685	-		HER17_RS08095	0.15	+0.4
1,789,701	+		HER17_RS08095	0.16	-0.4
1,789,701	+		HER17_RS08095	0.16	+0.4
1,789,710	-		HER17_RS08095	0.17	+1.3
1,789,729	+		HER17_RS08095	0.19	-0.0
1,789,742	+		HER17_RS08095	0.20	+0.3
1,789,743	-		HER17_RS08095	0.20	+0.4
1,789,832	+		HER17_RS08095	0.29	+0.7
1,789,832	+		HER17_RS08095	0.29	-0.2
1,789,832	+		HER17_RS08095	0.29	-2.4
1,789,833	-		HER17_RS08095	0.29	+0.2
1,789,833	-		HER17_RS08095	0.29	+1.1
1,789,833	-		HER17_RS08095	0.29	+0.2
1,789,833	-		HER17_RS08095	0.29	+0.8
1,789,838	-		HER17_RS08095	0.29	-0.4
1,789,868	+		HER17_RS08095	0.32	+0.2
1,789,869	-		HER17_RS08095	0.32	+1.0
1,789,869	-		HER17_RS08095	0.32	+0.3
1,789,940	-		HER17_RS08095	0.39	+0.0
1,790,031	+		HER17_RS08095	0.48	+0.0
1,790,031	+		HER17_RS08095	0.48	-0.3
1,790,032	-		HER17_RS08095	0.48	-1.4
1,790,032	-		HER17_RS08095	0.48	-0.8
1,790,032	-		HER17_RS08095	0.48	+0.5
1,790,033	+		HER17_RS08095	0.48	+0.8
1,790,033	+		HER17_RS08095	0.48	-0.3
1,790,034	-		HER17_RS08095	0.48	+0.6
1,790,034	-		HER17_RS08095	0.48	+1.1
1,790,034	-		HER17_RS08095	0.48	-1.1
1,790,042	+		HER17_RS08095	0.49	+0.7
1,790,084	+		HER17_RS08095	0.53	+0.9
1,790,084	+		HER17_RS08095	0.53	+0.0
1,790,085	-		HER17_RS08095	0.53	-0.2
1,790,121	+		HER17_RS08095	0.56	-0.1
1,790,124	-		HER17_RS08095	0.57	+0.3
1,790,142	+		HER17_RS08095	0.58	+0.6
1,790,144	+		HER17_RS08095	0.58	+0.2
1,790,144	+		HER17_RS08095	0.58	+0.7
1,790,144	+		HER17_RS08095	0.58	+0.2
1,790,145	-		HER17_RS08095	0.59	+0.1
1,790,145	-		HER17_RS08095	0.59	+0.7
1,790,145	-		HER17_RS08095	0.59	+1.5
1,790,145	-		HER17_RS08095	0.59	+0.4
1,790,145	-		HER17_RS08095	0.59	+0.8
1,790,145	-		HER17_RS08095	0.59	-0.3
1,790,145	-		HER17_RS08095	0.59	+0.4
1,790,145	-		HER17_RS08095	0.59	+0.1
1,790,196	-		HER17_RS08095	0.63	-1.6
1,790,300	+		HER17_RS08095	0.73	+0.3
1,790,300	+		HER17_RS08095	0.73	-1.6
1,790,300	+		HER17_RS08095	0.73	+0.3
1,790,300	+		HER17_RS08095	0.73	+0.9
1,790,301	-		HER17_RS08095	0.73	+2.9
1,790,301	-		HER17_RS08095	0.73	-0.4
1,790,301	-		HER17_RS08095	0.73	+0.9
1,790,301	-		HER17_RS08095	0.73	+0.9
1,790,371	+		HER17_RS08095	0.80	-0.2
1,790,377	+		HER17_RS08095	0.80	+0.8
1,790,378	-		HER17_RS08095	0.81	+0.5
1,790,378	-		HER17_RS08095	0.81	+0.6
1,790,378	-		HER17_RS08095	0.81	+1.8
1,790,378	-		HER17_RS08095	0.81	-0.9
1,790,421	-		HER17_RS08095	0.85	-0.3
1,790,421	-		HER17_RS08095	0.85	+2.0
1,790,426	+		HER17_RS08095	0.85	+0.3
1,790,463	-		HER17_RS08095	0.89	-0.1
1,790,463	-		HER17_RS08095	0.89	-0.0
1,790,463	-		HER17_RS08095	0.89	-0.2
1,790,499	-				+0.0
1,790,634	+				-1.4
1,790,635	-				-0.1
1,790,666	-				+1.0
1,790,666	-				-0.4
1,790,689	+				-0.0
1,790,690	-				+0.4
1,790,690	-				+0.3
1,790,690	-				-0.8
1,790,690	-				-0.1
1,790,690	-				+1.2
1,790,690	-				-0.1
1,790,690	-				-0.4
1,790,698	+				+0.4
1,790,699	-				-1.2
1,790,758	+				+0.5
1,790,791	+				+0.2
1,790,791	+				+1.6
1,790,805	-				+0.4
1,790,859	-		HER17_RS08100	0.12	-0.6
1,790,900	+		HER17_RS08100	0.14	-0.6
1,790,901	-		HER17_RS08100	0.14	+0.7
1,790,901	-		HER17_RS08100	0.14	+0.2
1,790,924	+		HER17_RS08100	0.15	+0.9
1,790,961	+		HER17_RS08100	0.17	+0.4
1,790,962	-		HER17_RS08100	0.17	-0.6
1,790,962	-		HER17_RS08100	0.17	-0.6
1,790,964	-		HER17_RS08100	0.17	+0.4
1,790,964	-		HER17_RS08100	0.17	+0.4
1,791,000	-		HER17_RS08100	0.19	+0.4
1,791,063	-		HER17_RS08100	0.22	+1.0
1,791,063	-		HER17_RS08100	0.22	-0.2
1,791,069	-		HER17_RS08100	0.22	+0.1
1,791,069	-		HER17_RS08100	0.22	+0.2
1,791,077	-		HER17_RS08100	0.23	+1.8
1,791,080	+		HER17_RS08100	0.23	+0.2
1,791,081	-		HER17_RS08100	0.23	-0.8
1,791,104	-		HER17_RS08100	0.24	+0.5
1,791,167	+		HER17_RS08100	0.27	+0.4
1,791,196	+		HER17_RS08100	0.29	-0.3
1,791,196	+		HER17_RS08100	0.29	-0.7
1,791,197	-		HER17_RS08100	0.29	+0.4
1,791,450	-		HER17_RS08100	0.41	-0.3
1,791,482	+		HER17_RS08100	0.43	-0.6
1,791,482	+		HER17_RS08100	0.43	-0.3
1,791,483	-		HER17_RS08100	0.43	+0.0
1,791,503	-		HER17_RS08100	0.44	+0.7
1,791,503	-		HER17_RS08100	0.44	-0.6
1,791,579	-		HER17_RS08100	0.48	+0.6
1,791,596	+		HER17_RS08100	0.49	-0.2
1,791,623	+		HER17_RS08100	0.50	+0.4
1,791,623	+		HER17_RS08100	0.50	-1.0
1,791,635	+		HER17_RS08100	0.51	-1.6
1,791,636	-		HER17_RS08100	0.51	-0.5
1,791,651	+		HER17_RS08100	0.51	+1.3
1,791,652	-		HER17_RS08100	0.51	-1.1
1,791,655	+		HER17_RS08100	0.52	+0.3
1,791,655	+		HER17_RS08100	0.52	-0.7
1,791,656	-		HER17_RS08100	0.52	-1.1
1,791,656	-		HER17_RS08100	0.52	-1.1
1,791,656	-		HER17_RS08100	0.52	+0.2
1,791,659	+		HER17_RS08100	0.52	+0.8
1,791,660	-		HER17_RS08100	0.52	+1.0
1,791,660	-		HER17_RS08100	0.52	+0.2
1,791,660	-		HER17_RS08100	0.52	-0.3
1,791,719	-		HER17_RS08100	0.55	-0.6
1,791,768	-		HER17_RS08100	0.57	+0.1
1,791,768	-		HER17_RS08100	0.57	+0.2
1,791,768	-		HER17_RS08100	0.57	+0.5
1,791,831	-		HER17_RS08100	0.60	+0.1
1,791,849	-		HER17_RS08100	0.61	-0.6
1,791,905	+		HER17_RS08100	0.64	+0.6
1,791,905	+		HER17_RS08100	0.64	+0.2
1,792,232	+		HER17_RS08100	0.80	-1.1
1,792,232	+		HER17_RS08100	0.80	+1.0
1,792,285	+		HER17_RS08100	0.83	-0.4
1,792,285	+		HER17_RS08100	0.83	+0.1
1,792,285	+		HER17_RS08100	0.83	+0.2
1,792,285	+		HER17_RS08100	0.83	-0.2
1,792,285	+		HER17_RS08100	0.83	-0.5
1,792,286	-		HER17_RS08100	0.83	-0.7
1,792,286	-		HER17_RS08100	0.83	-0.8
1,792,286	-		HER17_RS08100	0.83	-0.4
1,792,286	-		HER17_RS08100	0.83	-0.3
1,792,286	-		HER17_RS08100	0.83	+0.1
1,792,333	-		HER17_RS08100	0.85	+0.0
1,792,333	-		HER17_RS08100	0.85	+0.6
1,792,337	-		HER17_RS08100	0.86	+0.4
1,792,358	+		HER17_RS08100	0.87	+0.9
1,792,358	+		HER17_RS08100	0.87	+0.6
1,792,358	+		HER17_RS08100	0.87	+0.3
1,792,359	-		HER17_RS08100	0.87	+2.3
1,792,400	+		HER17_RS08100	0.89	+0.4
1,792,434	+				+0.1
1,792,497	-				+0.0
1,792,500	+				+0.1
1,792,532	+				+0.6
1,792,580	-				+0.7
1,792,624	-				-1.5
1,792,627	-				+1.7
1,792,741	+		HER17_RS08105	0.17	+0.6
1,792,742	-		HER17_RS08105	0.17	-1.6
1,792,752	+		HER17_RS08105	0.19	+0.9
1,792,752	+		HER17_RS08105	0.19	-0.3
1,792,753	-		HER17_RS08105	0.19	-0.1
1,792,763	+		HER17_RS08105	0.21	-0.4
1,792,900	+		HER17_RS08105	0.49	-0.8
1,792,920	+		HER17_RS08105	0.53	-0.1
1,792,920	+		HER17_RS08105	0.53	+0.6
1,792,920	+		HER17_RS08105	0.53	+0.1
1,792,920	+		HER17_RS08105	0.53	-0.9
1,792,961	+		HER17_RS08105	0.61	-0.0
1,792,962	-		HER17_RS08105	0.61	-0.5
1,793,045	-		HER17_RS08105	0.78	+1.0
1,793,153	-				-0.1
1,793,201	+				+0.2
1,793,201	+				-0.2
1,793,201	+				-0.0
1,793,201	+				+0.3
1,793,201	+				+1.0
1,793,202	-				-0.0
1,793,202	-				+0.6
1,793,202	-				+0.0
1,793,202	-				-0.2
1,793,208	-				+0.1
1,793,208	-				+0.0
1,793,208	-				+1.5
1,793,289	+				+0.6
1,793,289	+				-0.0
1,793,289	+				-0.4
1,793,289	+				-0.9
1,793,289	+				+0.3
1,793,290	-				+0.1
1,793,290	-				+0.2
1,793,330	+				-0.6
1,793,330	+				+0.1
1,793,358	+				-1.9
1,793,379	+				+1.7
1,793,380	-				+0.3
1,793,403	+				-0.8
1,793,403	+				-1.1
1,793,465	-		HER17_RS08110	0.10	-2.9
1,793,469	-		HER17_RS08110	0.11	+0.6
1,793,469	-		HER17_RS08110	0.11	-0.1
1,793,469	-		HER17_RS08110	0.11	-0.5
1,793,472	-		HER17_RS08110	0.11	+0.6
1,793,482	-		HER17_RS08110	0.11	-0.2
1,793,484	+		HER17_RS08110	0.12	+0.1
1,793,484	+		HER17_RS08110	0.12	-0.0
1,793,530	-		HER17_RS08110	0.14	+1.0
1,793,621	+		HER17_RS08110	0.20	-0.0
1,793,621	+		HER17_RS08110	0.20	+0.7
1,793,622	-		HER17_RS08110	0.20	+0.3