Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05090

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,144,809	+				-1.0
1,144,865	+				+0.6
1,144,868	+				-0.2
1,144,924	+				+1.9
1,144,981	-				+0.2
1,144,993	-				-0.3
1,145,003	-				-0.4
1,145,003	-				+0.0
1,145,006	-				+0.8
1,145,027	+				-0.6
1,145,028	-				+0.5
1,145,028	-				-1.0
1,145,028	-				-0.3
1,145,028	-				+0.2
1,145,029	+				-0.2
1,145,130	+				-0.5
1,145,131	-				-0.3
1,145,141	-				-0.9
1,145,141	-				-0.7
1,145,141	-				-1.3
1,145,141	-				-1.6
1,145,175	+				+0.2
1,145,175	+				+0.5
1,145,243	+		HER17_RS05085	0.13	-0.0
1,145,276	+		HER17_RS05085	0.18	-0.0
1,145,276	+		HER17_RS05085	0.18	+0.3
1,145,277	-		HER17_RS05085	0.19	-0.0
1,145,277	-		HER17_RS05085	0.19	+0.3
1,145,283	+		HER17_RS05085	0.20	-0.3
1,145,283	+		HER17_RS05085	0.20	-2.1
1,145,284	-		HER17_RS05085	0.20	-1.5
1,145,284	-		HER17_RS05085	0.20	-1.2
1,145,284	-		HER17_RS05085	0.20	+2.1
1,145,284	-		HER17_RS05085	0.20	+0.0
1,145,284	-		HER17_RS05085	0.20	-0.9
1,145,284	-		HER17_RS05085	0.20	-0.1
1,145,284	-		HER17_RS05085	0.20	+0.7
1,145,284	-		HER17_RS05085	0.20	-2.0
1,145,284	-		HER17_RS05085	0.20	-1.1
1,145,284	-		HER17_RS05085	0.20	+2.0
1,145,284	-		HER17_RS05085	0.20	+0.5
1,145,330	+		HER17_RS05085	0.28	-0.5
1,145,342	+		HER17_RS05085	0.30	-0.1
1,145,343	-		HER17_RS05085	0.30	-0.1
1,145,343	-		HER17_RS05085	0.30	-0.2
1,145,367	-		HER17_RS05085	0.34	-0.8
1,145,431	+		HER17_RS05085	0.46	-0.1
1,145,431	+		HER17_RS05085	0.46	-0.3
1,145,554	-		HER17_RS05085	0.67	+1.2
1,145,586	-		HER17_RS05085	0.73	-0.3
1,145,594	+		HER17_RS05085	0.74	+0.5
1,145,594	+		HER17_RS05085	0.74	+0.7
1,145,595	-		HER17_RS05085	0.75	+0.8
1,145,595	-		HER17_RS05085	0.75	-0.6
1,145,627	+		HER17_RS05085	0.80	+0.2
1,145,627	+		HER17_RS05085	0.80	+0.4
1,145,628	-		HER17_RS05085	0.80	-0.9
1,145,657	+		HER17_RS05085	0.86	-1.3
1,145,657	+		HER17_RS05085	0.86	-0.0
1,145,657	+		HER17_RS05085	0.86	-0.1
1,145,658	-		HER17_RS05085	0.86	-0.1
1,145,696	+				+0.4
1,145,729	+				+0.2
1,145,773	+				+0.0
1,145,829	+		HER17_RS05090	0.22	+1.3
1,145,830	-		HER17_RS05090	0.22	-0.0
1,145,832	+		HER17_RS05090	0.23	-1.5
1,145,832	+		HER17_RS05090	0.23	-0.0
1,145,832	+		HER17_RS05090	0.23	+0.0
1,145,833	-		HER17_RS05090	0.23	-1.2
1,145,856	-		HER17_RS05090	0.28	-0.8
1,145,856	-		HER17_RS05090	0.28	+1.2
1,145,887	+		HER17_RS05090	0.35	-0.5
1,145,888	-		HER17_RS05090	0.36	-0.4
1,145,888	-		HER17_RS05090	0.36	-0.0
1,145,908	+		HER17_RS05090	0.40	-0.4
1,145,914	+		HER17_RS05090	0.42	-1.7
1,145,926	-		HER17_RS05090	0.45	-0.7
1,145,985	-		HER17_RS05090	0.58	-0.8
1,146,003	+		HER17_RS05090	0.62	+0.4
1,146,007	+		HER17_RS05090	0.63	-0.6
1,146,007	+		HER17_RS05090	0.63	-0.2
1,146,033	+		HER17_RS05090	0.69	+1.8
1,146,033	+		HER17_RS05090	0.69	+0.3
1,146,033	+		HER17_RS05090	0.69	+0.2
1,146,034	-		HER17_RS05090	0.70	-0.3
1,146,034	-		HER17_RS05090	0.70	-0.6
1,146,034	-		HER17_RS05090	0.70	-0.4
1,146,113	+		HER17_RS05090	0.88	+1.0
1,146,113	+		HER17_RS05090	0.88	-0.8
1,146,114	-		HER17_RS05090	0.88	+0.2
1,146,121	-				-0.0
1,146,121	-				-0.3
1,146,130	+				+0.1
1,146,130	+				+0.2
1,146,131	-				-0.2
1,146,132	+				+0.2
1,146,133	-				+0.9
1,146,133	-				-0.1
1,146,133	-				-1.1
1,146,133	-				+1.1
1,146,133	-				-0.6
1,146,133	-				-0.5
1,146,162	-				+0.2
1,146,206	+				-0.0
1,146,207	-				-0.2
1,146,207	-				+0.1
1,146,207	-				+0.2
1,146,212	+				+1.1
1,146,212	+				-0.5
1,146,212	+				+0.6
1,146,212	+				+0.1
1,146,213	-				-1.0
1,146,213	-				-0.0
1,146,213	-				-0.2
1,146,221	+				+0.6
1,146,222	-				-0.1
1,146,222	-				+0.6
1,146,366	-				-0.6
1,146,366	-				-0.0
1,146,554	+		HER17_RS05095	0.20	+0.3
1,146,637	-		HER17_RS05095	0.25	-0.2
1,146,680	+		HER17_RS05095	0.28	-0.5
1,146,681	-		HER17_RS05095	0.28	+1.2
1,146,681	-		HER17_RS05095	0.28	-0.0
1,146,696	+		HER17_RS05095	0.29	-1.3
1,146,696	+		HER17_RS05095	0.29	+0.8
1,146,697	-		HER17_RS05095	0.29	-0.8
1,146,697	-		HER17_RS05095	0.29	-0.2
1,146,697	-		HER17_RS05095	0.29	-0.5
1,146,698	+		HER17_RS05095	0.29	-0.8
1,146,698	+		HER17_RS05095	0.29	-0.6
1,146,698	+		HER17_RS05095	0.29	+0.2
1,146,699	-		HER17_RS05095	0.29	+0.9
1,146,783	+		HER17_RS05095	0.35	-0.8
1,146,784	-		HER17_RS05095	0.35	+1.1
1,146,804	+		HER17_RS05095	0.36	-0.2
1,146,805	-		HER17_RS05095	0.36	+0.0
1,146,805	-		HER17_RS05095	0.36	-0.1
1,146,805	-		HER17_RS05095	0.36	-0.5
1,146,805	-		HER17_RS05095	0.36	-1.8
1,146,831	+		HER17_RS05095	0.38	+1.3
1,146,832	-		HER17_RS05095	0.38	-0.0
1,146,832	-		HER17_RS05095	0.38	-0.5
1,146,924	+		HER17_RS05095	0.44	+0.8
1,146,933	+		HER17_RS05095	0.44	-0.2
1,146,933	+		HER17_RS05095	0.44	-1.9
1,146,934	-		HER17_RS05095	0.44	-1.3
1,146,934	-		HER17_RS05095	0.44	-1.2
1,146,953	+		HER17_RS05095	0.45	+2.4
1,146,961	+		HER17_RS05095	0.46	-0.2
1,146,966	+		HER17_RS05095	0.46	-1.3
1,146,966	+		HER17_RS05095	0.46	-1.6
1,146,966	+		HER17_RS05095	0.46	-0.5
1,146,987	-		HER17_RS05095	0.48	+0.5
1,146,987	-		HER17_RS05095	0.48	+0.3
1,147,017	-		HER17_RS05095	0.50	-0.8
1,147,017	-		HER17_RS05095	0.50	-0.3
1,147,020	+		HER17_RS05095	0.50	+0.3
1,147,021	-		HER17_RS05095	0.50	-1.5
1,147,021	-		HER17_RS05095	0.50	+0.8
1,147,021	-		HER17_RS05095	0.50	-1.2
1,147,021	-		HER17_RS05095	0.50	+0.3
1,147,066	-		HER17_RS05095	0.53	-1.2
1,147,066	-		HER17_RS05095	0.53	-1.4
1,147,079	+		HER17_RS05095	0.54	-0.0
1,147,099	-		HER17_RS05095	0.55	-1.8
1,147,102	+		HER17_RS05095	0.55	-0.5
1,147,103	-		HER17_RS05095	0.55	+0.4
1,147,113	-		HER17_RS05095	0.56	-0.5
1,147,144	-		HER17_RS05095	0.58	-1.0
1,147,144	-		HER17_RS05095	0.58	+0.3