Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS03080

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS03075 and HER17_RS03080 are separated by 2 nucleotidesHER17_RS03080 and HER17_RS03085 overlap by 1 nucleotides HER17_RS03075: HER17_RS03075 - 3-isopropylmalate dehydratase large subunit, at 693,425 to 694,825 _RS03075 HER17_RS03080: HER17_RS03080 - 3-isopropylmalate dehydrogenase, at 694,828 to 695,919 _RS03080 HER17_RS03085: HER17_RS03085 - 2-isopropylmalate synthase, at 695,919 to 697,517 _RS03085 Position (kb) 694 695 696Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 693.851 kb on - strand, within HER17_RS03075at 693.851 kb on - strand, within HER17_RS03075at 693.852 kb on + strand, within HER17_RS03075at 693.852 kb on + strand, within HER17_RS03075at 693.852 kb on + strand, within HER17_RS03075at 693.852 kb on + strand, within HER17_RS03075at 693.852 kb on + strand, within HER17_RS03075at 693.852 kb on + strand, within HER17_RS03075at 693.853 kb on - strand, within HER17_RS03075at 693.853 kb on - strand, within HER17_RS03075at 693.853 kb on - strand, within HER17_RS03075at 693.853 kb on - strand, within HER17_RS03075at 693.885 kb on - strand, within HER17_RS03075at 693.950 kb on - strand, within HER17_RS03075at 693.952 kb on + strand, within HER17_RS03075at 694.004 kb on - strand, within HER17_RS03075at 694.101 kb on + strand, within HER17_RS03075at 694.204 kb on + strand, within HER17_RS03075at 694.204 kb on + strand, within HER17_RS03075at 694.204 kb on + strand, within HER17_RS03075at 694.205 kb on - strand, within HER17_RS03075at 694.259 kb on - strand, within HER17_RS03075at 694.390 kb on + strand, within HER17_RS03075at 694.391 kb on - strand, within HER17_RS03075at 694.533 kb on + strand, within HER17_RS03075at 694.730 kb on + strandat 694.749 kb on + strandat 694.749 kb on + strandat 694.749 kb on + strandat 694.749 kb on + strandat 694.749 kb on + strandat 694.749 kb on + strandat 694.749 kb on + strandat 694.750 kb on - strandat 694.750 kb on - strandat 694.750 kb on - strandat 694.750 kb on - strandat 694.750 kb on - strandat 694.750 kb on - strandat 694.811 kb on + strandat 694.811 kb on + strandat 694.811 kb on + strandat 694.812 kb on - strandat 694.812 kb on - strandat 694.812 kb on - strandat 694.819 kb on + strandat 694.939 kb on - strand, within HER17_RS03080at 695.044 kb on - strand, within HER17_RS03080at 695.181 kb on + strand, within HER17_RS03080at 695.182 kb on - strand, within HER17_RS03080at 695.217 kb on + strand, within HER17_RS03080at 695.221 kb on + strand, within HER17_RS03080at 695.245 kb on - strand, within HER17_RS03080at 695.246 kb on + strand, within HER17_RS03080at 695.246 kb on + strand, within HER17_RS03080at 695.246 kb on + strand, within HER17_RS03080at 695.247 kb on - strand, within HER17_RS03080at 695.247 kb on - strand, within HER17_RS03080at 695.247 kb on - strand, within HER17_RS03080at 695.247 kb on - strand, within HER17_RS03080at 695.247 kb on - strand, within HER17_RS03080at 695.420 kb on + strand, within HER17_RS03080at 695.420 kb on + strand, within HER17_RS03080at 695.420 kb on + strand, within HER17_RS03080at 695.420 kb on + strand, within HER17_RS03080at 695.486 kb on + strand, within HER17_RS03080at 695.486 kb on + strand, within HER17_RS03080at 695.487 kb on - strand, within HER17_RS03080at 695.547 kb on + strand, within HER17_RS03080at 695.548 kb on - strand, within HER17_RS03080at 695.580 kb on - strand, within HER17_RS03080at 695.635 kb on + strand, within HER17_RS03080at 695.635 kb on + strand, within HER17_RS03080at 695.793 kb on - strand, within HER17_RS03080at 695.793 kb on - strand, within HER17_RS03080at 695.805 kb on + strand, within HER17_RS03080at 695.806 kb on - strand, within HER17_RS03080at 695.830 kb on + strandat 695.842 kb on + strandat 695.843 kb on - strandat 695.863 kb on + strandat 695.863 kb on + strandat 695.863 kb on + strandat 695.863 kb on + strandat 695.906 kb on + strandat 695.906 kb on + strandat 695.907 kb on - strandat 695.907 kb on - strandat 695.907 kb on - strandat 696.033 kb on + strandat 696.033 kb on + strandat 696.039 kb on + strandat 696.039 kb on + strandat 696.040 kb on - strandat 696.040 kb on - strandat 696.040 kb on - strandat 696.109 kb on + strand, within HER17_RS03085at 696.109 kb on + strand, within HER17_RS03085at 696.109 kb on + strand, within HER17_RS03085at 696.122 kb on + strand, within HER17_RS03085at 696.123 kb on - strand, within HER17_RS03085at 696.123 kb on - strand, within HER17_RS03085at 696.123 kb on - strand, within HER17_RS03085at 696.172 kb on + strand, within HER17_RS03085at 696.173 kb on - strand, within HER17_RS03085at 696.177 kb on - strand, within HER17_RS03085at 696.334 kb on + strand, within HER17_RS03085at 696.346 kb on + strand, within HER17_RS03085at 696.346 kb on + strand, within HER17_RS03085at 696.377 kb on + strand, within HER17_RS03085at 696.378 kb on - strand, within HER17_RS03085at 696.400 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.422 kb on + strand, within HER17_RS03085at 696.423 kb on - strand, within HER17_RS03085at 696.449 kb on - strand, within HER17_RS03085at 696.449 kb on - strand, within HER17_RS03085at 696.466 kb on + strand, within HER17_RS03085at 696.467 kb on - strand, within HER17_RS03085at 696.467 kb on - strand, within HER17_RS03085at 696.467 kb on - strand, within HER17_RS03085at 696.497 kb on + strand, within HER17_RS03085at 696.498 kb on - strand, within HER17_RS03085at 696.546 kb on + strand, within HER17_RS03085at 696.547 kb on - strand, within HER17_RS03085at 696.547 kb on - strand, within HER17_RS03085at 696.683 kb on + strand, within HER17_RS03085at 696.683 kb on + strand, within HER17_RS03085at 696.713 kb on + strand, within HER17_RS03085at 696.719 kb on - strand, within HER17_RS03085at 696.747 kb on + strand, within HER17_RS03085at 696.748 kb on - strand, within HER17_RS03085at 696.843 kb on + strand, within HER17_RS03085at 696.843 kb on + strand, within HER17_RS03085at 696.864 kb on + strand, within HER17_RS03085at 696.864 kb on + strand, within HER17_RS03085at 696.865 kb on - strand, within HER17_RS03085

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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693,851 - HER17_RS03075 0.30 -1.8
693,851 - HER17_RS03075 0.30 -3.5
693,852 + HER17_RS03075 0.30 -2.5
693,852 + HER17_RS03075 0.30 -4.4
693,852 + HER17_RS03075 0.30 -2.2
693,852 + HER17_RS03075 0.30 -2.5
693,852 + HER17_RS03075 0.30 -2.6
693,852 + HER17_RS03075 0.30 -3.4
693,853 - HER17_RS03075 0.31 -4.0
693,853 - HER17_RS03075 0.31 -2.5
693,853 - HER17_RS03075 0.31 -2.3
693,853 - HER17_RS03075 0.31 -1.9
693,885 - HER17_RS03075 0.33 -4.0
693,950 - HER17_RS03075 0.37 -1.5
693,952 + HER17_RS03075 0.38 -3.7
694,004 - HER17_RS03075 0.41 -2.2
694,101 + HER17_RS03075 0.48 -3.8
694,204 + HER17_RS03075 0.56 -3.6
694,204 + HER17_RS03075 0.56 -2.3
694,204 + HER17_RS03075 0.56 -2.1
694,205 - HER17_RS03075 0.56 -2.5
694,259 - HER17_RS03075 0.60 -4.2
694,390 + HER17_RS03075 0.69 -1.2
694,391 - HER17_RS03075 0.69 -4.0
694,533 + HER17_RS03075 0.79 -3.5
694,730 + -2.4
694,749 + -3.2
694,749 + -4.3
694,749 + -2.1
694,749 + -2.9
694,749 + -1.9
694,749 + -4.1
694,749 + -3.2
694,750 - -3.4
694,750 - -1.5
694,750 - -1.2
694,750 - -3.1
694,750 - -3.0
694,750 - -3.4
694,811 + -2.6
694,811 + -3.0
694,811 + -1.4
694,812 - -2.6
694,812 - -3.7
694,812 - -2.1
694,819 + -2.6
694,939 - HER17_RS03080 0.10 -4.1
695,044 - HER17_RS03080 0.20 -4.2
695,181 + HER17_RS03080 0.32 -2.6
695,182 - HER17_RS03080 0.32 -1.2
695,217 + HER17_RS03080 0.36 -3.9
695,221 + HER17_RS03080 0.36 -1.2
695,245 - HER17_RS03080 0.38 -3.5
695,246 + HER17_RS03080 0.38 -2.0
695,246 + HER17_RS03080 0.38 -3.4
695,246 + HER17_RS03080 0.38 -2.9
695,247 - HER17_RS03080 0.38 -4.6
695,247 - HER17_RS03080 0.38 -3.4
695,247 - HER17_RS03080 0.38 -3.2
695,247 - HER17_RS03080 0.38 -2.6
695,247 - HER17_RS03080 0.38 -2.6
695,420 + HER17_RS03080 0.54 -2.1
695,420 + HER17_RS03080 0.54 -1.6
695,420 + HER17_RS03080 0.54 -2.7
695,420 + HER17_RS03080 0.54 -2.1
695,486 + HER17_RS03080 0.60 -1.9
695,486 + HER17_RS03080 0.60 -2.2
695,487 - HER17_RS03080 0.60 -3.5
695,547 + HER17_RS03080 0.66 -5.2
695,548 - HER17_RS03080 0.66 -1.5
695,580 - HER17_RS03080 0.69 -1.5
695,635 + HER17_RS03080 0.74 -4.4
695,635 + HER17_RS03080 0.74 -2.9
695,793 - HER17_RS03080 0.88 -3.1
695,793 - HER17_RS03080 0.88 -3.6
695,805 + HER17_RS03080 0.89 -0.9
695,806 - HER17_RS03080 0.90 -4.4
695,830 + -3.7
695,842 + -1.6
695,843 - -2.8
695,863 + -0.6
695,863 + -2.5
695,863 + -2.2
695,863 + -3.7
695,906 + -1.9
695,906 + -2.1
695,907 - -4.7
695,907 - -2.4
695,907 - -3.1
696,033 + -4.0
696,033 + -3.5
696,039 + -2.9
696,039 + -3.7
696,040 - -3.0
696,040 - -1.8
696,040 - -2.9
696,109 + HER17_RS03085 0.12 -3.9
696,109 + HER17_RS03085 0.12 -2.7
696,109 + HER17_RS03085 0.12 -3.9
696,122 + HER17_RS03085 0.13 -4.4
696,123 - HER17_RS03085 0.13 -0.7
696,123 - HER17_RS03085 0.13 -1.2
696,123 - HER17_RS03085 0.13 -2.9
696,172 + HER17_RS03085 0.16 -3.6
696,173 - HER17_RS03085 0.16 -2.5
696,177 - HER17_RS03085 0.16 -1.2
696,334 + HER17_RS03085 0.26 -3.8
696,346 + HER17_RS03085 0.27 -1.2
696,346 + HER17_RS03085 0.27 -3.3
696,377 + HER17_RS03085 0.29 -2.6
696,378 - HER17_RS03085 0.29 -1.7
696,400 + HER17_RS03085 0.30 -3.0
696,422 + HER17_RS03085 0.31 -1.2
696,422 + HER17_RS03085 0.31 -1.6
696,422 + HER17_RS03085 0.31 -4.0
696,422 + HER17_RS03085 0.31 -2.8
696,422 + HER17_RS03085 0.31 -3.3
696,422 + HER17_RS03085 0.31 -4.7
696,422 + HER17_RS03085 0.31 -2.4
696,422 + HER17_RS03085 0.31 -2.4
696,423 - HER17_RS03085 0.32 -3.0
696,449 - HER17_RS03085 0.33 -3.2
696,449 - HER17_RS03085 0.33 -3.7
696,466 + HER17_RS03085 0.34 -2.8
696,467 - HER17_RS03085 0.34 -2.7
696,467 - HER17_RS03085 0.34 -3.1
696,467 - HER17_RS03085 0.34 -2.7
696,497 + HER17_RS03085 0.36 -2.9
696,498 - HER17_RS03085 0.36 -3.1
696,546 + HER17_RS03085 0.39 -4.3
696,547 - HER17_RS03085 0.39 -2.1
696,547 - HER17_RS03085 0.39 -2.9
696,683 + HER17_RS03085 0.48 -2.2
696,683 + HER17_RS03085 0.48 -1.9
696,713 + HER17_RS03085 0.50 -4.2
696,719 - HER17_RS03085 0.50 -2.6
696,747 + HER17_RS03085 0.52 -3.2
696,748 - HER17_RS03085 0.52 -1.6
696,843 + HER17_RS03085 0.58 -2.7
696,843 + HER17_RS03085 0.58 -3.2
696,864 + HER17_RS03085 0.59 -4.5
696,864 + HER17_RS03085 0.59 -1.8
696,865 - HER17_RS03085 0.59 -2.1

Or see this region's nucleotide sequence