Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21490

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,816,895	+		HER17_RS21480	0.63	+1.0
4,816,896	-		HER17_RS21480	0.63	-0.0
4,816,896	-		HER17_RS21480	0.63	+1.0
4,816,968	+		HER17_RS21480	0.70	-0.3
4,816,968	+		HER17_RS21480	0.70	+1.3
4,816,990	+		HER17_RS21480	0.73	-0.8
4,817,012	-		HER17_RS21480	0.75	-0.4
4,817,012	-		HER17_RS21480	0.75	+0.3
4,817,047	+		HER17_RS21480	0.78	+0.2
4,817,113	+		HER17_RS21480	0.85	+0.0
4,817,137	-		HER17_RS21480	0.87	+1.0
4,817,137	-		HER17_RS21480	0.87	-0.0
4,817,151	+		HER17_RS21480	0.89	-0.0
4,817,151	+		HER17_RS21480	0.89	-0.8
4,817,159	+		HER17_RS21480	0.90	+0.3
4,817,289	-				+0.5
4,817,289	-				-0.1
4,817,295	+				+1.2
4,817,296	-				+0.9
4,817,296	-				+0.1
4,817,296	-				+0.4
4,817,306	+				+0.8
4,817,307	-				-1.2
4,817,307	-				+1.2
4,817,310	+				+0.7
4,817,328	-				+0.2
4,817,341	-				-0.2
4,817,350	+				+1.0
4,817,350	+				+0.2
4,817,351	-				-0.4
4,817,380	+		HER17_RS21485	0.15	-0.9
4,817,380	+		HER17_RS21485	0.15	-0.6
4,817,381	-		HER17_RS21485	0.16	-1.7
4,817,394	+		HER17_RS21485	0.20	+0.5
4,817,428	+		HER17_RS21485	0.33	-0.2
4,817,454	+		HER17_RS21485	0.43	-0.3
4,817,455	-		HER17_RS21485	0.43	+0.2
4,817,458	+		HER17_RS21485	0.44	-0.8
4,817,459	-		HER17_RS21485	0.44	+1.2
4,817,459	-		HER17_RS21485	0.44	+0.7
4,817,483	+		HER17_RS21485	0.53	+0.2
4,817,483	+		HER17_RS21485	0.53	+0.3
4,817,483	+		HER17_RS21485	0.53	-0.0
4,817,483	+		HER17_RS21485	0.53	+0.9
4,817,484	-		HER17_RS21485	0.54	+0.0
4,817,581	+		HER17_RS21485	0.90	-0.3
4,817,581	+		HER17_RS21485	0.90	+1.2
4,817,581	+		HER17_RS21485	0.90	-1.0
4,817,620	+				-0.1
4,817,674	-				-0.1
4,817,682	+				+0.8
4,817,683	-				+0.4
4,817,683	-				+0.3
4,817,683	-				-0.1
4,817,683	-				+0.3
4,817,684	+				-1.7
4,817,684	+				+0.4
4,817,684	+				+0.1
4,817,685	-				-1.4
4,817,685	-				+0.9
4,817,685	-				+0.0
4,817,685	-				+0.3
4,817,685	-				+0.8
4,817,685	-				+0.4
4,817,691	-				+0.4
4,817,753	+				-0.3
4,817,754	-				-0.1
4,817,760	+				-0.7
4,817,760	+				+0.5
4,817,760	+				+1.2
4,817,760	+				-0.5
4,817,760	+				+1.0
4,817,761	-				-0.3
4,817,764	+				+0.5
4,817,764	+				+0.2
4,817,764	+				+0.2
4,817,765	-				+0.9
4,817,765	-				+0.0
4,817,765	-				-1.4
4,817,765	-				-0.3
4,817,802	+				+0.9
4,817,802	+				+0.3
4,817,802	+				+0.4
4,817,802	+				+1.6
4,817,802	+				-0.1
4,817,803	-				+0.1
4,817,806	+				+0.3
4,817,807	-				+0.1
4,817,807	-				-0.3
4,817,807	-				-1.3
4,817,807	-				+0.3
4,817,807	-				-1.2
4,817,807	-				+0.0
4,817,807	-				-0.3
4,817,888	+		HER17_RS21490	0.12	+0.4
4,817,909	+		HER17_RS21490	0.15	+0.4
4,817,909	+		HER17_RS21490	0.15	+1.8
4,817,911	+		HER17_RS21490	0.16	+0.1
4,817,911	+		HER17_RS21490	0.16	-0.8
4,817,911	+		HER17_RS21490	0.16	+0.3
4,817,912	-		HER17_RS21490	0.16	-0.4
4,817,986	+		HER17_RS21490	0.28	-0.1
4,817,986	+		HER17_RS21490	0.28	+0.6
4,818,092	+		HER17_RS21490	0.47	+0.6
4,818,092	+		HER17_RS21490	0.47	+0.2
4,818,093	-		HER17_RS21490	0.47	+0.6
4,818,176	-		HER17_RS21490	0.61	+0.6
4,818,176	-		HER17_RS21490	0.61	+1.3
4,818,209	+		HER17_RS21490	0.67	+0.6
4,818,209	+		HER17_RS21490	0.67	-0.4
4,818,209	+		HER17_RS21490	0.67	-0.3
4,818,210	-		HER17_RS21490	0.67	+0.2
4,818,210	-		HER17_RS21490	0.67	+1.9
4,818,215	+		HER17_RS21490	0.68	+0.7
4,818,216	-		HER17_RS21490	0.68	+0.7
4,818,216	-		HER17_RS21490	0.68	-0.0
4,818,219	+		HER17_RS21490	0.69	-0.4
4,818,219	+		HER17_RS21490	0.69	+0.2
4,818,219	+		HER17_RS21490	0.69	+0.6
4,818,219	+		HER17_RS21490	0.69	+0.3
4,818,220	-		HER17_RS21490	0.69	-0.4
4,818,222	+		HER17_RS21490	0.69	+0.9
4,818,223	-		HER17_RS21490	0.69	-0.3
4,818,223	-		HER17_RS21490	0.69	-0.1
4,818,250	+		HER17_RS21490	0.74	+0.2
4,818,250	+		HER17_RS21490	0.74	+0.4
4,818,250	+		HER17_RS21490	0.74	+0.1
4,818,251	-		HER17_RS21490	0.74	+0.4
4,818,251	-		HER17_RS21490	0.74	+0.8
4,818,281	+		HER17_RS21490	0.79	+0.8
4,818,282	-		HER17_RS21490	0.80	-1.0
4,818,282	-		HER17_RS21490	0.80	+1.7
4,818,282	-		HER17_RS21490	0.80	+0.2
4,818,285	+		HER17_RS21490	0.80	+1.0
4,818,285	+		HER17_RS21490	0.80	+0.2
4,818,285	+		HER17_RS21490	0.80	+1.2
4,818,285	+		HER17_RS21490	0.80	-0.1
4,818,285	+		HER17_RS21490	0.80	-0.1
4,818,286	-		HER17_RS21490	0.80	-0.3
4,818,286	-		HER17_RS21490	0.80	+0.2
4,818,319	-		HER17_RS21490	0.86	-0.8
4,818,331	-		HER17_RS21490	0.88	+0.7
4,818,346	-				-2.0
4,818,397	+				-0.2
4,818,428	+		HER17_RS21495	0.13	+0.0
4,818,428	+		HER17_RS21495	0.13	+0.1
4,818,429	-		HER17_RS21495	0.13	+0.3
4,818,429	-		HER17_RS21495	0.13	-0.0
4,818,429	-		HER17_RS21495	0.13	+0.2
4,818,430	+		HER17_RS21495	0.13	+0.6
4,818,430	+		HER17_RS21495	0.13	+0.5
4,818,431	-		HER17_RS21495	0.14	+0.6
4,818,437	-		HER17_RS21495	0.16	-0.3
4,818,453	+		HER17_RS21495	0.21	-0.8
4,818,453	+		HER17_RS21495	0.21	+0.7
4,818,453	+		HER17_RS21495	0.21	-0.6
4,818,453	+		HER17_RS21495	0.21	-0.4
4,818,453	+		HER17_RS21495	0.21	+0.5
4,818,453	+		HER17_RS21495	0.21	+0.2
4,818,453	+		HER17_RS21495	0.21	+1.2
4,818,453	+		HER17_RS21495	0.21	+0.2
4,818,453	+		HER17_RS21495	0.21	-0.9
4,818,453	+		HER17_RS21495	0.21	+0.6
4,818,454	-		HER17_RS21495	0.21	-0.4
4,818,454	-		HER17_RS21495	0.21	-0.1
4,818,454	-		HER17_RS21495	0.21	+0.3
4,818,454	-		HER17_RS21495	0.21	+0.1
4,818,458	-		HER17_RS21495	0.23	+0.8
4,818,458	-		HER17_RS21495	0.23	-0.3
4,818,475	-		HER17_RS21495	0.28	+0.5
4,818,481	+		HER17_RS21495	0.30	-1.5
4,818,482	-		HER17_RS21495	0.30	-0.1
4,818,509	-		HER17_RS21495	0.39	+0.0
4,818,514	+		HER17_RS21495	0.41	+0.2
4,818,514	+		HER17_RS21495	0.41	-1.1
4,818,514	+		HER17_RS21495	0.41	-0.6
4,818,514	+		HER17_RS21495	0.41	-0.0
4,818,515	-		HER17_RS21495	0.41	+0.5
4,818,515	-		HER17_RS21495	0.41	+0.2
4,818,547	+		HER17_RS21495	0.52	-0.2
4,818,547	+		HER17_RS21495	0.52	+0.0
4,818,548	-		HER17_RS21495	0.52	+1.2
4,818,553	+		HER17_RS21495	0.54	+0.1
4,818,553	+		HER17_RS21495	0.54	+1.0
4,818,554	-		HER17_RS21495	0.54	+0.0
4,818,554	-		HER17_RS21495	0.54	-0.3
4,818,554	-		HER17_RS21495	0.54	-0.2
4,818,557	+		HER17_RS21495	0.55	-0.8
4,818,557	+		HER17_RS21495	0.55	+1.1
4,818,557	+		HER17_RS21495	0.55	+1.2
4,818,557	+		HER17_RS21495	0.55	+0.3
4,818,557	+		HER17_RS21495	0.55	+0.3
4,818,557	+		HER17_RS21495	0.55	+0.6
4,818,558	-		HER17_RS21495	0.55	-2.2
4,818,558	-		HER17_RS21495	0.55	-0.0
4,818,558	-		HER17_RS21495	0.55	-0.4
4,818,558	-		HER17_RS21495	0.55	+0.7
4,818,558	-		HER17_RS21495	0.55	-1.0
4,818,558	-		HER17_RS21495	0.55	+0.1
4,818,558	-		HER17_RS21495	0.55	+0.2
4,818,558	-		HER17_RS21495	0.55	+0.6
4,818,558	-		HER17_RS21495	0.55	+0.6
4,818,663	+		HER17_RS21495	0.90	-0.1
4,818,663	+		HER17_RS21495	0.90	+0.5
4,818,664	-				+0.3
4,818,702	-				+0.3