Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21410

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,798,943	-		HER17_RS21405	0.55	+0.3
4,798,951	+		HER17_RS21405	0.55	-0.2
4,799,050	+		HER17_RS21405	0.61	+0.4
4,799,051	-		HER17_RS21405	0.61	-0.7
4,799,051	-		HER17_RS21405	0.61	+0.1
4,799,051	-		HER17_RS21405	0.61	-0.0
4,799,053	+		HER17_RS21405	0.61	-0.4
4,799,064	+		HER17_RS21405	0.62	+0.6
4,799,099	+		HER17_RS21405	0.64	-0.6
4,799,099	+		HER17_RS21405	0.64	+0.8
4,799,100	-		HER17_RS21405	0.64	+0.1
4,799,314	+		HER17_RS21405	0.77	+0.0
4,799,339	-		HER17_RS21405	0.78	+0.2
4,799,417	-		HER17_RS21405	0.83	+0.0
4,799,470	+		HER17_RS21405	0.86	-0.2
4,799,470	+		HER17_RS21405	0.86	+0.0
4,799,605	+				+0.5
4,799,605	+				-0.4
4,799,606	-				-1.1
4,799,606	-				-0.3
4,799,606	-				+0.4
4,799,614	+				-0.7
4,799,615	-				-0.3
4,799,650	+				-0.7
4,799,651	-				+1.0
4,799,653	+				-0.1
4,799,654	-				+0.8
4,799,709	-				-0.2
4,799,712	+				-2.3
4,799,713	-				+0.3
4,799,713	-				-0.2
4,799,713	-				+2.2
4,799,715	+				+0.0
4,799,716	-				-0.4
4,799,757	+				+0.2
4,799,757	+				-0.0
4,799,757	+				-2.3
4,799,757	+				+0.2
4,799,758	-				-0.3
4,799,758	-				-0.9
4,799,758	-				-0.3
4,799,758	-				-0.8
4,799,758	-				+0.3
4,799,758	-				-0.6
4,799,758	-				-1.8
4,799,758	-				-0.2
4,799,823	+				-0.4
4,799,826	+				-0.3
4,799,826	+				+1.2
4,799,826	+				+0.9
4,799,826	+				+0.1
4,799,827	-				-0.0
4,799,833	+				+0.9
4,799,833	+				+0.0
4,799,833	+				-0.2
4,799,834	-				+0.4
4,799,834	-				-0.4
4,799,849	-				-0.5
4,799,853	+				+0.3
4,799,853	+				+0.1
4,799,853	+				+0.1
4,799,853	+				+0.3
4,799,853	+				+1.9
4,799,853	+				-0.2
4,799,854	-				+0.6
4,799,854	-				-0.5
4,799,854	-				+1.2
4,799,854	-				-1.4
4,799,856	+				-0.6
4,799,857	-				-0.4
4,799,874	-				-0.1
4,799,874	-				+0.3
4,799,874	-				+1.2
4,799,889	+				-0.5
4,799,890	-				-0.5
4,799,965	+				-0.7
4,799,965	+				-0.3
4,799,965	+				-0.3
4,799,966	-				+0.3
4,799,967	+				-0.3
4,799,967	+				+0.5
4,799,968	-				+0.5
4,799,968	-				+0.2
4,799,968	-				+0.1
4,799,968	-				-1.0
4,799,992	+				+0.9
4,800,037	+		HER17_RS21410	0.14	-1.8
4,800,080	+		HER17_RS21410	0.18	+0.4
4,800,091	+		HER17_RS21410	0.20	-0.2
4,800,091	+		HER17_RS21410	0.20	+0.7
4,800,092	-		HER17_RS21410	0.20	+0.2
4,800,092	-		HER17_RS21410	0.20	+0.5
4,800,111	-		HER17_RS21410	0.22	+0.7
4,800,111	-		HER17_RS21410	0.22	-0.0
4,800,124	-		HER17_RS21410	0.23	-2.0
4,800,283	+		HER17_RS21410	0.40	-0.7
4,800,284	-		HER17_RS21410	0.40	+2.3
4,800,286	+		HER17_RS21410	0.40	-0.1
4,800,303	+		HER17_RS21410	0.42	+0.4
4,800,303	+		HER17_RS21410	0.42	+0.4
4,800,304	-		HER17_RS21410	0.42	-0.8
4,800,351	+		HER17_RS21410	0.47	-0.3
4,800,352	-		HER17_RS21410	0.47	+0.4
4,800,421	+		HER17_RS21410	0.55	-0.2
4,800,422	-		HER17_RS21410	0.55	-0.1
4,800,574	+		HER17_RS21410	0.71	+0.4
4,800,589	+		HER17_RS21410	0.73	+0.4
4,800,590	-		HER17_RS21410	0.73	+0.6
4,800,593	+		HER17_RS21410	0.73	+0.5
4,800,594	-		HER17_RS21410	0.73	-0.1
4,800,594	-		HER17_RS21410	0.73	+0.0
4,800,626	+		HER17_RS21410	0.76	-0.8
4,800,627	-		HER17_RS21410	0.77	+0.4
4,800,649	+		HER17_RS21410	0.79	+0.9
4,800,661	+		HER17_RS21410	0.80	-0.1
4,800,661	+		HER17_RS21410	0.80	-0.1
4,800,661	+		HER17_RS21410	0.80	+0.3
4,800,732	+		HER17_RS21410	0.88	+0.2
4,800,732	+		HER17_RS21410	0.88	+0.6
4,800,732	+		HER17_RS21410	0.88	-0.2
4,800,733	-		HER17_RS21410	0.88	+1.7
4,800,733	-		HER17_RS21410	0.88	+0.0
4,800,733	-		HER17_RS21410	0.88	-0.3
4,800,772	+				+0.3
4,800,799	-				-0.4
4,800,799	-				+0.1
4,800,801	+				+0.3
4,800,801	+				-0.3
4,800,801	+				+0.7
4,800,801	+				-0.0
4,800,801	+				-1.7
4,800,801	+				+0.0
4,800,801	+				+0.4
4,800,802	-				+0.1
4,800,802	-				-1.0
4,800,802	-				-1.2
4,800,802	-				-0.5
4,800,830	+				+0.7
4,800,843	+				+0.8
4,800,843	+				+1.2
4,800,843	+				+0.6
4,800,843	+				-0.2
4,800,843	+				-0.7
4,800,843	+				+0.4
4,800,844	-				+0.2
4,800,844	-				-0.3
4,800,844	-				+1.3
4,800,847	+				-0.1
4,800,847	+				-0.8
4,800,847	+				+0.4
4,800,848	-				+0.6
4,800,848	-				-0.2
4,800,848	-				+0.1
4,800,848	-				-0.2
4,800,859	+				+0.0
4,800,860	-				+1.5
4,800,891	+				-0.2
4,800,916	+				+0.7
4,800,917	-				-0.8
4,800,939	+				-0.4
4,800,940	-				-0.1
4,800,940	-				+0.1
4,800,940	-				-0.2
4,800,948	-				+0.0
4,800,948	-				+0.6
4,800,971	+				+1.0
4,800,972	-				-0.6
4,800,979	+				-0.3
4,800,979	+				+0.1
4,800,980	-				+0.8
4,800,980	-				+0.1
4,800,980	-				-0.4
4,800,987	+				+0.4
4,800,987	+				-1.1
4,800,988	-				-0.4
4,800,988	-				-0.0
4,800,988	-				-0.1
4,800,988	-				+0.7
4,800,988	-				-0.6
4,800,988	-				+1.2
4,801,039	+		HER17_RS21415	0.12	-0.3
4,801,102	-		HER17_RS21415	0.26	-0.1
4,801,107	+		HER17_RS21415	0.28	+0.0
4,801,107	+		HER17_RS21415	0.28	-0.4
4,801,107	+		HER17_RS21415	0.28	+0.2
4,801,108	-		HER17_RS21415	0.28	+0.6
4,801,263	-		HER17_RS21415	0.63	-0.5
4,801,277	+		HER17_RS21415	0.66	-0.1
4,801,343	+		HER17_RS21415	0.82	-0.0
4,801,343	+		HER17_RS21415	0.82	-0.3
4,801,379	+		HER17_RS21415	0.90	-0.5
4,801,380	-				+0.2
4,801,380	-				+0.3
4,801,423	+				-0.3
4,801,423	+				+0.0
4,801,423	+				-0.0
4,801,434	+				-0.0
4,801,435	-				-0.0
4,801,435	-				+0.5
4,801,447	-				+0.2
4,801,447	-				+1.0
4,801,478	-				+0.6
4,801,485	-				+2.2
4,801,654	+		HER17_RS21420	0.27	+1.4
4,801,654	+		HER17_RS21420	0.27	+0.1
4,801,654	+		HER17_RS21420	0.27	-0.1
4,801,654	+		HER17_RS21420	0.27	-0.6
4,801,655	-		HER17_RS21420	0.27	+3.0
4,801,655	-		HER17_RS21420	0.27	-0.7
4,801,655	-		HER17_RS21420	0.27	+0.6
4,801,655	-		HER17_RS21420	0.27	+1.7
4,801,655	-		HER17_RS21420	0.27	+0.1
4,801,655	-		HER17_RS21420	0.27	-1.6
4,801,660	+		HER17_RS21420	0.28	+0.5
4,801,660	+		HER17_RS21420	0.28	+0.4
4,801,660	+		HER17_RS21420	0.28	+0.3
4,801,679	+		HER17_RS21420	0.31	-0.3
4,801,683	+		HER17_RS21420	0.32	+1.5
4,801,683	+		HER17_RS21420	0.32	-1.2
4,801,683	+		HER17_RS21420	0.32	-0.6
4,801,684	-		HER17_RS21420	0.32	+0.1
4,801,691	+		HER17_RS21420	0.33	-0.1
4,801,705	+		HER17_RS21420	0.35	+0.0
4,801,705	+		HER17_RS21420	0.35	-1.1
4,801,706	-		HER17_RS21420	0.36	-2.2
4,801,706	-		HER17_RS21420	0.36	-0.2
4,801,706	-		HER17_RS21420	0.36	+0.1
4,801,776	-		HER17_RS21420	0.47	+0.5