Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20950

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS20940 and HER17_RS20945 are separated by 47 nucleotidesHER17_RS20945 and HER17_RS20950 are separated by 113 nucleotidesHER17_RS20950 and HER17_RS20955 are separated by 42 nucleotidesHER17_RS20955 and HER17_RS20960 overlap by 76 nucleotides HER17_RS20940: HER17_RS20940 - hypothetical protein, at 4,687,696 to 4,688,253 _RS20940 HER17_RS20945: HER17_RS20945 - hypothetical protein, at 4,688,301 to 4,688,846 _RS20945 HER17_RS20950: HER17_RS20950 - hypothetical protein, at 4,688,960 to 4,689,346 _RS20950 HER17_RS20955: HER17_RS20955 - DUF596 domain-containing protein, at 4,689,389 to 4,689,838 _RS20955 HER17_RS20960: HER17_RS20960 - AI-2E family transporter, at 4,689,763 to 4,690,977 _RS20960 Position (kb) 4688 4689 4690Strain fitness (log2 ratio) -2 -1 0 1 2at 4688.019 kb on + strand, within HER17_RS20940at 4688.036 kb on + strand, within HER17_RS20940at 4688.071 kb on + strand, within HER17_RS20940at 4688.072 kb on - strand, within HER17_RS20940at 4688.072 kb on - strand, within HER17_RS20940at 4688.072 kb on - strand, within HER17_RS20940at 4688.102 kb on - strand, within HER17_RS20940at 4688.109 kb on + strand, within HER17_RS20940at 4688.109 kb on + strand, within HER17_RS20940at 4688.110 kb on - strand, within HER17_RS20940at 4688.140 kb on - strand, within HER17_RS20940at 4688.164 kb on + strand, within HER17_RS20940at 4688.218 kb on + strandat 4688.218 kb on + strandat 4688.374 kb on + strand, within HER17_RS20945at 4688.378 kb on - strand, within HER17_RS20945at 4688.455 kb on + strand, within HER17_RS20945at 4688.455 kb on + strand, within HER17_RS20945at 4688.456 kb on - strand, within HER17_RS20945at 4688.456 kb on - strand, within HER17_RS20945at 4688.458 kb on + strand, within HER17_RS20945at 4688.458 kb on + strand, within HER17_RS20945at 4688.458 kb on + strand, within HER17_RS20945at 4688.458 kb on + strand, within HER17_RS20945at 4688.458 kb on + strand, within HER17_RS20945at 4688.459 kb on - strand, within HER17_RS20945at 4688.459 kb on - strand, within HER17_RS20945at 4688.459 kb on - strand, within HER17_RS20945at 4688.462 kb on - strand, within HER17_RS20945at 4688.462 kb on - strand, within HER17_RS20945at 4688.523 kb on - strand, within HER17_RS20945at 4688.639 kb on + strand, within HER17_RS20945at 4688.673 kb on - strand, within HER17_RS20945at 4688.673 kb on - strand, within HER17_RS20945at 4688.673 kb on - strand, within HER17_RS20945at 4688.675 kb on + strand, within HER17_RS20945at 4688.676 kb on - strand, within HER17_RS20945at 4688.676 kb on - strand, within HER17_RS20945at 4688.707 kb on + strand, within HER17_RS20945at 4688.779 kb on + strand, within HER17_RS20945at 4688.779 kb on + strand, within HER17_RS20945at 4688.779 kb on + strand, within HER17_RS20945at 4688.780 kb on - strand, within HER17_RS20945at 4688.780 kb on - strand, within HER17_RS20945at 4688.817 kb on + strandat 4688.846 kb on + strandat 4688.847 kb on - strandat 4688.891 kb on - strandat 4688.921 kb on + strandat 4688.922 kb on - strandat 4688.942 kb on - strandat 4688.942 kb on - strandat 4688.945 kb on - strandat 4688.948 kb on - strandat 4688.975 kb on + strandat 4688.978 kb on + strandat 4688.979 kb on - strandat 4688.979 kb on - strandat 4688.979 kb on - strandat 4689.018 kb on + strand, within HER17_RS20950at 4689.018 kb on + strand, within HER17_RS20950at 4689.018 kb on + strand, within HER17_RS20950at 4689.019 kb on - strand, within HER17_RS20950at 4689.019 kb on - strand, within HER17_RS20950at 4689.220 kb on - strand, within HER17_RS20950at 4689.249 kb on + strand, within HER17_RS20950at 4689.250 kb on - strand, within HER17_RS20950at 4689.302 kb on - strand, within HER17_RS20950at 4689.330 kb on - strandat 4689.407 kb on + strandat 4689.407 kb on + strandat 4689.407 kb on + strandat 4689.408 kb on - strandat 4689.408 kb on - strandat 4689.463 kb on + strand, within HER17_RS20955at 4689.463 kb on + strand, within HER17_RS20955at 4689.463 kb on + strand, within HER17_RS20955at 4689.463 kb on + strand, within HER17_RS20955at 4689.463 kb on + strand, within HER17_RS20955at 4689.463 kb on + strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.464 kb on - strand, within HER17_RS20955at 4689.497 kb on + strand, within HER17_RS20955at 4689.498 kb on - strand, within HER17_RS20955at 4689.498 kb on - strand, within HER17_RS20955at 4689.750 kb on + strand, within HER17_RS20955at 4689.769 kb on + strandat 4689.770 kb on - strandat 4689.770 kb on - strandat 4689.770 kb on - strandat 4689.777 kb on + strandat 4689.777 kb on + strandat 4689.777 kb on + strandat 4689.777 kb on + strandat 4689.778 kb on - strandat 4689.778 kb on - strandat 4689.881 kb on + strandat 4689.881 kb on + strandat 4689.882 kb on - strandat 4689.901 kb on - strand, within HER17_RS20960at 4689.915 kb on + strand, within HER17_RS20960at 4690.038 kb on + strand, within HER17_RS20960at 4690.055 kb on + strand, within HER17_RS20960at 4690.055 kb on + strand, within HER17_RS20960at 4690.056 kb on - strand, within HER17_RS20960at 4690.056 kb on - strand, within HER17_RS20960at 4690.229 kb on - strand, within HER17_RS20960at 4690.273 kb on + strand, within HER17_RS20960at 4690.273 kb on + strand, within HER17_RS20960at 4690.273 kb on + strand, within HER17_RS20960at 4690.274 kb on - strand, within HER17_RS20960

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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4,688,019 + HER17_RS20940 0.58 +0.4
4,688,036 + HER17_RS20940 0.61 +0.6
4,688,071 + HER17_RS20940 0.67 +0.3
4,688,072 - HER17_RS20940 0.67 +2.0
4,688,072 - HER17_RS20940 0.67 -1.4
4,688,072 - HER17_RS20940 0.67 +0.2
4,688,102 - HER17_RS20940 0.73 +0.8
4,688,109 + HER17_RS20940 0.74 +0.1
4,688,109 + HER17_RS20940 0.74 +1.0
4,688,110 - HER17_RS20940 0.74 -0.2
4,688,140 - HER17_RS20940 0.80 -2.0
4,688,164 + HER17_RS20940 0.84 +0.0
4,688,218 + +0.6
4,688,218 + +0.1
4,688,374 + HER17_RS20945 0.13 -0.2
4,688,378 - HER17_RS20945 0.14 +0.3
4,688,455 + HER17_RS20945 0.28 -0.1
4,688,455 + HER17_RS20945 0.28 -0.2
4,688,456 - HER17_RS20945 0.28 -0.9
4,688,456 - HER17_RS20945 0.28 -0.2
4,688,458 + HER17_RS20945 0.29 +0.5
4,688,458 + HER17_RS20945 0.29 +0.3
4,688,458 + HER17_RS20945 0.29 +0.5
4,688,458 + HER17_RS20945 0.29 -0.5
4,688,458 + HER17_RS20945 0.29 +0.1
4,688,459 - HER17_RS20945 0.29 +0.7
4,688,459 - HER17_RS20945 0.29 +0.5
4,688,459 - HER17_RS20945 0.29 +0.2
4,688,462 - HER17_RS20945 0.29 +0.2
4,688,462 - HER17_RS20945 0.29 +0.1
4,688,523 - HER17_RS20945 0.41 -1.0
4,688,639 + HER17_RS20945 0.62 +0.4
4,688,673 - HER17_RS20945 0.68 +0.3
4,688,673 - HER17_RS20945 0.68 -0.6
4,688,673 - HER17_RS20945 0.68 -0.0
4,688,675 + HER17_RS20945 0.68 -0.2
4,688,676 - HER17_RS20945 0.69 +0.1
4,688,676 - HER17_RS20945 0.69 +1.3
4,688,707 + HER17_RS20945 0.74 +0.1
4,688,779 + HER17_RS20945 0.88 +0.3
4,688,779 + HER17_RS20945 0.88 -1.2
4,688,779 + HER17_RS20945 0.88 -0.2
4,688,780 - HER17_RS20945 0.88 -0.4
4,688,780 - HER17_RS20945 0.88 +1.4
4,688,817 + +0.1
4,688,846 + +0.6
4,688,847 - +0.5
4,688,891 - +2.6
4,688,921 + -0.8
4,688,922 - +0.8
4,688,942 - +0.8
4,688,942 - -0.7
4,688,945 - +0.2
4,688,948 - -0.6
4,688,975 + +0.2
4,688,978 + +1.6
4,688,979 - +0.2
4,688,979 - -0.3
4,688,979 - -0.3
4,689,018 + HER17_RS20950 0.15 -0.8
4,689,018 + HER17_RS20950 0.15 -1.0
4,689,018 + HER17_RS20950 0.15 -1.3
4,689,019 - HER17_RS20950 0.15 -0.2
4,689,019 - HER17_RS20950 0.15 -0.5
4,689,220 - HER17_RS20950 0.67 +0.2
4,689,249 + HER17_RS20950 0.75 +0.3
4,689,250 - HER17_RS20950 0.75 +0.6
4,689,302 - HER17_RS20950 0.88 +0.6
4,689,330 - -0.1
4,689,407 + +0.7
4,689,407 + -0.6
4,689,407 + +0.3
4,689,408 - -0.3
4,689,408 - +0.3
4,689,463 + HER17_RS20955 0.16 +0.6
4,689,463 + HER17_RS20955 0.16 -0.7
4,689,463 + HER17_RS20955 0.16 -1.9
4,689,463 + HER17_RS20955 0.16 +1.4
4,689,463 + HER17_RS20955 0.16 +0.4
4,689,463 + HER17_RS20955 0.16 +0.3
4,689,464 - HER17_RS20955 0.17 +0.7
4,689,464 - HER17_RS20955 0.17 +0.7
4,689,464 - HER17_RS20955 0.17 +0.3
4,689,464 - HER17_RS20955 0.17 +0.4
4,689,464 - HER17_RS20955 0.17 +0.3
4,689,464 - HER17_RS20955 0.17 -0.1
4,689,464 - HER17_RS20955 0.17 +0.3
4,689,464 - HER17_RS20955 0.17 +0.3
4,689,497 + HER17_RS20955 0.24 +0.4
4,689,498 - HER17_RS20955 0.24 +1.2
4,689,498 - HER17_RS20955 0.24 +0.2
4,689,750 + HER17_RS20955 0.80 +1.2
4,689,769 + +0.6
4,689,770 - -0.1
4,689,770 - +0.7
4,689,770 - -0.0
4,689,777 + +0.3
4,689,777 + +0.0
4,689,777 + -0.1
4,689,777 + +0.1
4,689,778 - -0.1
4,689,778 - +0.4
4,689,881 + +0.4
4,689,881 + +0.9
4,689,882 - +0.7
4,689,901 - HER17_RS20960 0.11 -0.6
4,689,915 + HER17_RS20960 0.13 +0.5
4,690,038 + HER17_RS20960 0.23 -0.2
4,690,055 + HER17_RS20960 0.24 -0.2
4,690,055 + HER17_RS20960 0.24 +0.6
4,690,056 - HER17_RS20960 0.24 +0.7
4,690,056 - HER17_RS20960 0.24 -0.4
4,690,229 - HER17_RS20960 0.38 +0.5
4,690,273 + HER17_RS20960 0.42 +0.8
4,690,273 + HER17_RS20960 0.42 +0.7
4,690,273 + HER17_RS20960 0.42 +0.4
4,690,274 - HER17_RS20960 0.42 -0.6

Or see this region's nucleotide sequence