Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20340

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,559,669	+		HER17_RS20335	0.40	-2.5
4,559,670	-		HER17_RS20335	0.40	-2.7
4,559,698	-		HER17_RS20335	0.41	-2.5
4,559,733	-		HER17_RS20335	0.44	-1.4
4,559,733	-		HER17_RS20335	0.44	-4.4
4,559,754	+		HER17_RS20335	0.45	-3.9
4,559,754	+		HER17_RS20335	0.45	-0.9
4,559,755	-		HER17_RS20335	0.45	-3.0
4,559,755	-		HER17_RS20335	0.45	-2.5
4,559,755	-		HER17_RS20335	0.45	-0.7
4,559,755	-		HER17_RS20335	0.45	-1.9
4,559,755	-		HER17_RS20335	0.45	-1.3
4,559,756	+		HER17_RS20335	0.45	-0.9
4,559,758	+		HER17_RS20335	0.45	-2.6
4,559,758	+		HER17_RS20335	0.45	-2.6
4,559,758	+		HER17_RS20335	0.45	-1.5
4,559,758	+		HER17_RS20335	0.45	-0.7
4,559,758	+		HER17_RS20335	0.45	-1.9
4,559,758	+		HER17_RS20335	0.45	-2.8
4,559,758	+		HER17_RS20335	0.45	-2.4
4,559,758	+		HER17_RS20335	0.45	-3.0
4,559,759	-		HER17_RS20335	0.45	-1.7
4,559,759	-		HER17_RS20335	0.45	-2.3
4,559,759	-		HER17_RS20335	0.45	-3.0
4,559,759	-		HER17_RS20335	0.45	-1.2
4,559,769	-		HER17_RS20335	0.46	-1.3
4,559,769	-		HER17_RS20335	0.46	-1.9
4,559,769	-		HER17_RS20335	0.46	-1.7
4,559,769	-		HER17_RS20335	0.46	-3.4
4,559,803	+		HER17_RS20335	0.48	-0.6
4,559,803	+		HER17_RS20335	0.48	-3.7
4,559,803	+		HER17_RS20335	0.48	-2.4
4,559,803	+		HER17_RS20335	0.48	-1.1
4,559,803	+		HER17_RS20335	0.48	-3.0
4,559,803	+		HER17_RS20335	0.48	-1.5
4,559,804	-		HER17_RS20335	0.48	-2.8
4,559,804	-		HER17_RS20335	0.48	-1.2
4,559,804	-		HER17_RS20335	0.48	-1.8
4,559,804	-		HER17_RS20335	0.48	-3.4
4,559,804	-		HER17_RS20335	0.48	-2.7
4,559,823	+		HER17_RS20335	0.49	-2.8
4,559,824	-		HER17_RS20335	0.49	-2.1
4,559,824	-		HER17_RS20335	0.49	-2.9
4,559,824	-		HER17_RS20335	0.49	-2.9
4,559,824	-		HER17_RS20335	0.49	-2.0
4,559,824	-		HER17_RS20335	0.49	-0.9
4,559,824	-		HER17_RS20335	0.49	-2.0
4,559,825	+		HER17_RS20335	0.49	-1.7
4,559,825	+		HER17_RS20335	0.49	-3.6
4,559,825	+		HER17_RS20335	0.49	-4.2
4,559,825	+		HER17_RS20335	0.49	-1.2
4,559,825	+		HER17_RS20335	0.49	-2.3
4,559,825	+		HER17_RS20335	0.49	-1.5
4,559,826	-		HER17_RS20335	0.49	-1.9
4,559,826	-		HER17_RS20335	0.49	-3.5
4,559,950	-		HER17_RS20335	0.57	-1.7
4,559,950	-		HER17_RS20335	0.57	-0.9
4,559,964	-		HER17_RS20335	0.58	-2.5
4,560,068	+		HER17_RS20335	0.65	-2.7
4,560,124	+		HER17_RS20335	0.68	-2.1
4,560,124	+		HER17_RS20335	0.68	-0.7
4,560,124	+		HER17_RS20335	0.68	-2.5
4,560,125	-		HER17_RS20335	0.68	-2.2
4,560,125	-		HER17_RS20335	0.68	-3.4
4,560,130	+		HER17_RS20335	0.69	-3.8
4,560,130	+		HER17_RS20335	0.69	-2.1
4,560,131	-		HER17_RS20335	0.69	-0.6
4,560,203	-		HER17_RS20335	0.73	-2.5
4,560,280	+		HER17_RS20335	0.78	-1.6
4,560,339	+		HER17_RS20335	0.82	-2.7
4,560,353	+		HER17_RS20335	0.83	-1.6
4,560,367	+		HER17_RS20335	0.83	-0.5
4,560,443	-		HER17_RS20335	0.88	-2.5
4,560,491	+				-2.7
4,560,491	+				-1.2
4,560,492	-				-1.4
4,560,545	+				-2.5
4,560,545	+				-3.8
4,560,545	+				-3.2
4,560,546	-				-1.7
4,560,546	-				-2.5
4,560,546	-				-1.7
4,560,627	+				-0.2
4,560,628	-				-2.8
4,560,657	+				-1.8
4,560,658	-				-2.0
4,560,660	+				-3.1
4,560,660	+				-2.7
4,560,731	+				-2.4
4,560,731	+				-1.7
4,560,731	+				-3.1
4,560,732	-				-2.8
4,560,732	-				-1.9
4,560,732	-				-1.2
4,560,732	-				-2.2
4,560,873	+		HER17_RS20340	0.18	-1.5
4,560,874	-		HER17_RS20340	0.18	-1.5
4,560,877	+		HER17_RS20340	0.18	-1.2
4,560,877	+		HER17_RS20340	0.18	-2.7
4,560,878	-		HER17_RS20340	0.18	-4.0
4,560,878	-		HER17_RS20340	0.18	-2.9
4,560,948	+		HER17_RS20340	0.23	-2.4
4,560,949	-		HER17_RS20340	0.23	-2.5
4,560,949	-		HER17_RS20340	0.23	-2.8
4,560,967	+		HER17_RS20340	0.25	-1.0
4,560,968	-		HER17_RS20340	0.25	-0.5
4,560,970	+		HER17_RS20340	0.25	-1.5
4,560,991	+		HER17_RS20340	0.27	-2.2
4,560,991	+		HER17_RS20340	0.27	-3.5
4,560,991	+		HER17_RS20340	0.27	-2.5
4,560,991	+		HER17_RS20340	0.27	-2.4
4,560,992	-		HER17_RS20340	0.27	-0.5
4,561,010	+		HER17_RS20340	0.28	-3.3
4,561,011	-		HER17_RS20340	0.28	-1.5
4,561,046	+		HER17_RS20340	0.31	-3.1
4,561,047	-		HER17_RS20340	0.31	-4.1
4,561,050	+		HER17_RS20340	0.31	-3.6
4,561,050	+		HER17_RS20340	0.31	-3.1
4,561,050	+		HER17_RS20340	0.31	-2.1
4,561,051	-		HER17_RS20340	0.31	-0.5
4,561,051	-		HER17_RS20340	0.31	-2.8
4,561,051	-		HER17_RS20340	0.31	-2.8
4,561,051	-		HER17_RS20340	0.31	-1.7
4,561,051	-		HER17_RS20340	0.31	-1.9
4,561,051	-		HER17_RS20340	0.31	-1.8
4,561,051	-		HER17_RS20340	0.31	-2.4
4,561,244	-		HER17_RS20340	0.46	-2.9
4,561,292	-		HER17_RS20340	0.50	-3.2
4,561,343	+		HER17_RS20340	0.54	-0.9
4,561,398	+		HER17_RS20340	0.58	-0.5
4,561,438	+		HER17_RS20340	0.61	-3.4
4,561,438	+		HER17_RS20340	0.61	-1.9
4,561,438	+		HER17_RS20340	0.61	-2.0
4,561,439	-		HER17_RS20340	0.62	-1.8
4,561,439	-		HER17_RS20340	0.62	-1.2
4,561,439	-		HER17_RS20340	0.62	-2.5
4,561,442	+		HER17_RS20340	0.62	-2.5
4,561,442	+		HER17_RS20340	0.62	-2.0
4,561,457	+		HER17_RS20340	0.63	-2.1
4,561,457	+		HER17_RS20340	0.63	-1.6
4,561,458	-		HER17_RS20340	0.63	-2.9
4,561,543	+		HER17_RS20340	0.70	-2.0
4,561,543	+		HER17_RS20340	0.70	-1.4
4,561,544	-		HER17_RS20340	0.70	-1.5
4,561,544	-		HER17_RS20340	0.70	+0.1
4,561,544	-		HER17_RS20340	0.70	-4.0
4,561,544	-		HER17_RS20340	0.70	-1.9
4,561,650	+		HER17_RS20340	0.78	-2.5
4,561,679	+		HER17_RS20340	0.80	-0.9
4,561,679	+		HER17_RS20340	0.80	-1.7
4,561,679	+		HER17_RS20340	0.80	-3.1
4,561,679	+		HER17_RS20340	0.80	-2.1
4,561,680	-		HER17_RS20340	0.80	-3.1
4,561,816	+				-2.0
4,561,816	+				-3.2
4,561,816	+				-2.3
4,561,816	+				+0.7
4,561,817	-				-2.7
4,561,817	-				-1.2
4,561,817	-				-3.9
4,561,819	+				-0.9
4,561,848	-				-1.9
4,561,854	+				-1.7
4,561,854	+				-3.4
4,561,854	+				-0.2
4,561,855	-				-2.9
4,561,855	-				-2.5
4,561,855	-				-3.0
4,561,881	+				-2.7
4,561,882	-				-2.7
4,561,957	+				+0.4
4,561,957	+				-0.0
4,561,957	+				+0.0
4,561,958	-				+1.6
4,561,958	-				+0.2
4,561,965	-				-0.2
4,561,968	+				-0.4
4,561,969	-				-1.1
4,562,020	-				-0.4
4,562,020	-				+1.5
4,562,022	+				+0.4
4,562,022	+				-0.4
4,562,022	+				-1.0
4,562,022	+				+0.7
4,562,022	+				+0.5
4,562,022	+				-0.4
4,562,023	-				+0.1
4,562,023	-				+1.5
4,562,023	-				-0.9
4,562,023	-				+0.1
4,562,026	+				-0.7
4,562,026	+				+0.4
4,562,026	+				+0.5
4,562,026	+				+0.6
4,562,026	+				+0.4
4,562,026	+				+0.2
4,562,027	-				-0.3
4,562,027	-				+0.7
4,562,027	-				-0.3
4,562,070	+				-0.2
4,562,070	+				+0.1
4,562,071	-				+0.4
4,562,232	+		HER17_RS20345	0.30	+0.8
4,562,232	+		HER17_RS20345	0.30	-0.2
4,562,239	-		HER17_RS20345	0.31	+0.9
4,562,239	-		HER17_RS20345	0.31	-1.2
4,562,282	+		HER17_RS20345	0.37	+0.3
4,562,283	-		HER17_RS20345	0.38	+0.8
4,562,296	+		HER17_RS20345	0.39	-1.0
4,562,354	+		HER17_RS20345	0.48	+0.6
4,562,355	-		HER17_RS20345	0.48	+0.6
4,562,393	+		HER17_RS20345	0.54	+0.6
4,562,420	+		HER17_RS20345	0.57	-0.2
4,562,421	-		HER17_RS20345	0.58	-0.5
4,562,428	-		HER17_RS20345	0.59	-3.5
4,562,441	+		HER17_RS20345	0.61	+0.4
4,562,442	-		HER17_RS20345	0.61	-0.5
4,562,442	-		HER17_RS20345	0.61	+0.3
4,562,456	+		HER17_RS20345	0.63	-0.1
4,562,456	+		HER17_RS20345	0.63	-0.1
4,562,457	-		HER17_RS20345	0.63	+0.5
4,562,457	-		HER17_RS20345	0.63	+0.8
4,562,457	-		HER17_RS20345	0.63	+0.7
4,562,498	-		HER17_RS20345	0.69	+0.4
4,562,498	-		HER17_RS20345	0.69	-0.0
4,562,519	+		HER17_RS20345	0.72	+0.1
4,562,519	+		HER17_RS20345	0.72	-0.0
4,562,519	+		HER17_RS20345	0.72	+0.4
4,562,612	+		HER17_RS20345	0.85	+0.2
4,562,612	+		HER17_RS20345	0.85	+1.6
4,562,613	-		HER17_RS20345	0.86	+1.2
4,562,613	-		HER17_RS20345	0.86	+0.4
4,562,613	-		HER17_RS20345	0.86	+0.9
4,562,613	-		HER17_RS20345	0.86	+0.4
4,562,628	+		HER17_RS20345	0.88	-0.5
4,562,629	-		HER17_RS20345	0.88	-0.1
4,562,629	-		HER17_RS20345	0.88	+0.5
4,562,629	-		HER17_RS20345	0.88	-0.2
4,562,630	+		HER17_RS20345	0.88	+0.2
4,562,630	+		HER17_RS20345	0.88	-1.7
4,562,630	+		HER17_RS20345	0.88	+0.1
4,562,631	-		HER17_RS20345	0.88	+0.6
4,562,631	-		HER17_RS20345	0.88	+0.6
4,562,717	+				+2.4
4,562,718	-				-0.5
4,562,718	-				-1.4
4,562,721	+				+1.1
4,562,722	-				+0.6
4,562,824	-		HER17_RS20350	0.40	+0.9
4,562,845	-		HER17_RS20350	0.47	-0.0
4,562,845	-		HER17_RS20350	0.47	+1.3
4,562,845	-		HER17_RS20350	0.47	+0.8
4,562,857	+		HER17_RS20350	0.52	+0.5
4,562,857	+		HER17_RS20350	0.52	+0.9
4,562,857	+		HER17_RS20350	0.52	-0.1
4,562,858	-		HER17_RS20350	0.52	-2.1
4,562,858	-		HER17_RS20350	0.52	+1.2
4,562,893	-		HER17_RS20350	0.65	+0.2
4,562,893	-		HER17_RS20350	0.65	-0.7