Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18110

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,076,304	+				-0.4
4,076,304	+				+0.5
4,076,304	+				+0.2
4,076,362	-		HER17_RS18105	0.15	-0.1
4,076,432	-		HER17_RS18105	0.22	+0.4
4,076,536	+		HER17_RS18105	0.33	+0.6
4,076,623	+		HER17_RS18105	0.42	-0.6
4,076,624	-		HER17_RS18105	0.42	+0.2
4,076,700	-		HER17_RS18105	0.50	-0.9
4,076,823	+		HER17_RS18105	0.63	-0.1
4,076,824	-		HER17_RS18105	0.63	+0.4
4,076,853	+		HER17_RS18105	0.66	-0.9
4,076,853	+		HER17_RS18105	0.66	+0.3
4,076,854	-		HER17_RS18105	0.66	-1.1
4,076,854	-		HER17_RS18105	0.66	+0.3
4,076,968	+		HER17_RS18105	0.78	+0.1
4,076,968	+		HER17_RS18105	0.78	-0.8
4,077,010	+		HER17_RS18105	0.82	-1.1
4,077,011	-		HER17_RS18105	0.82	-0.2
4,077,183	+				+0.3
4,077,198	+				-0.7
4,077,202	+				-0.0
4,077,326	-				-0.1
4,077,469	+				+0.6
4,077,470	-				+0.1
4,077,509	+				+0.1
4,077,510	-				+0.2
4,077,569	+		HER17_RS18110	0.11	+0.2
4,077,569	+		HER17_RS18110	0.11	-0.4
4,077,634	+		HER17_RS18110	0.13	-0.5
4,077,634	+		HER17_RS18110	0.13	+0.1
4,077,634	+		HER17_RS18110	0.13	+0.6
4,077,635	-		HER17_RS18110	0.13	+1.1
4,077,635	-		HER17_RS18110	0.13	-0.1
4,077,635	-		HER17_RS18110	0.13	+0.4
4,077,731	+		HER17_RS18110	0.17	-0.2
4,077,731	+		HER17_RS18110	0.17	-0.0
4,077,731	+		HER17_RS18110	0.17	-0.9
4,077,732	-		HER17_RS18110	0.17	+0.7
4,077,732	-		HER17_RS18110	0.17	-1.0
4,077,732	-		HER17_RS18110	0.17	-0.5
4,077,732	-		HER17_RS18110	0.17	-0.6
4,077,765	+		HER17_RS18110	0.19	-0.2
4,077,765	+		HER17_RS18110	0.19	+0.3
4,077,766	-		HER17_RS18110	0.19	+1.4
4,077,899	+		HER17_RS18110	0.24	+0.6
4,077,900	-		HER17_RS18110	0.24	-0.0
4,077,900	-		HER17_RS18110	0.24	-0.2
4,077,940	+		HER17_RS18110	0.26	-1.5
4,077,940	+		HER17_RS18110	0.26	+0.4
4,077,941	-		HER17_RS18110	0.26	+0.4
4,077,941	-		HER17_RS18110	0.26	+0.0
4,077,941	-		HER17_RS18110	0.26	+0.2
4,078,035	-		HER17_RS18110	0.29	+0.7
4,078,035	-		HER17_RS18110	0.29	+0.2
4,078,178	+		HER17_RS18110	0.35	+0.2
4,078,179	-		HER17_RS18110	0.35	+1.1
4,078,271	-		HER17_RS18110	0.39	+0.8
4,078,391	+		HER17_RS18110	0.44	+0.3
4,078,391	+		HER17_RS18110	0.44	-0.7
4,078,414	+		HER17_RS18110	0.45	-0.3
4,078,445	+		HER17_RS18110	0.46	+0.3
4,078,446	-		HER17_RS18110	0.46	-0.3
4,078,550	+		HER17_RS18110	0.50	+0.5
4,078,550	+		HER17_RS18110	0.50	+0.1
4,078,550	+		HER17_RS18110	0.50	+0.3
4,078,550	+		HER17_RS18110	0.50	+0.4
4,078,551	-		HER17_RS18110	0.50	+1.3
4,078,553	-		HER17_RS18110	0.50	+0.0
4,078,577	+		HER17_RS18110	0.51	-0.3
4,078,577	+		HER17_RS18110	0.51	+0.2
4,078,577	+		HER17_RS18110	0.51	+0.1
4,078,577	+		HER17_RS18110	0.51	+0.3
4,078,577	+		HER17_RS18110	0.51	+1.4
4,078,577	+		HER17_RS18110	0.51	+0.5
4,078,577	+		HER17_RS18110	0.51	+0.1
4,078,577	+		HER17_RS18110	0.51	+0.7
4,078,577	+		HER17_RS18110	0.51	+0.1
4,078,578	-		HER17_RS18110	0.51	+0.1
4,078,578	-		HER17_RS18110	0.51	-0.1
4,078,578	-		HER17_RS18110	0.51	+0.2
4,078,578	-		HER17_RS18110	0.51	-0.6
4,078,578	-		HER17_RS18110	0.51	-2.0
4,078,635	+		HER17_RS18110	0.53	+0.9
4,078,642	+		HER17_RS18110	0.54	+0.1
4,078,653	-		HER17_RS18110	0.54	+0.7
4,078,710	+		HER17_RS18110	0.56	-0.3
4,078,711	-		HER17_RS18110	0.56	-0.6
4,078,711	-		HER17_RS18110	0.56	-0.3
4,078,855	+		HER17_RS18110	0.62	+1.4
4,078,856	-		HER17_RS18110	0.62	+0.3
4,078,856	-		HER17_RS18110	0.62	-0.2
4,078,865	+		HER17_RS18110	0.63	+0.3
4,078,877	+		HER17_RS18110	0.63	-1.5
4,078,877	+		HER17_RS18110	0.63	+0.4
4,078,878	-		HER17_RS18110	0.63	+0.3
4,078,878	-		HER17_RS18110	0.63	-0.1
4,078,878	-		HER17_RS18110	0.63	+0.1
4,078,995	-		HER17_RS18110	0.68	+0.4
4,078,995	-		HER17_RS18110	0.68	+0.2
4,079,017	+		HER17_RS18110	0.69	-2.0
4,079,018	-		HER17_RS18110	0.69	+0.1
4,079,018	-		HER17_RS18110	0.69	-0.3
4,079,018	-		HER17_RS18110	0.69	+1.1
4,079,096	+		HER17_RS18110	0.72	-0.0
4,079,096	+		HER17_RS18110	0.72	+0.5
4,079,097	-		HER17_RS18110	0.72	+0.0
4,079,097	-		HER17_RS18110	0.72	+0.6
4,079,097	-		HER17_RS18110	0.72	-0.3
4,079,097	-		HER17_RS18110	0.72	-0.1
4,079,097	-		HER17_RS18110	0.72	+0.1
4,079,105	+		HER17_RS18110	0.72	-0.2
4,079,105	+		HER17_RS18110	0.72	+0.6
4,079,114	+		HER17_RS18110	0.73	-1.3
4,079,127	-		HER17_RS18110	0.73	+0.4
4,079,189	+		HER17_RS18110	0.76	+0.2
4,079,190	-		HER17_RS18110	0.76	-0.0
4,079,190	-		HER17_RS18110	0.76	-0.4
4,079,190	-		HER17_RS18110	0.76	+0.1
4,079,190	-		HER17_RS18110	0.76	-0.2
4,079,233	+		HER17_RS18110	0.77	+0.5
4,079,233	+		HER17_RS18110	0.77	+0.1
4,079,233	+		HER17_RS18110	0.77	-0.1
4,079,234	-		HER17_RS18110	0.77	-0.3
4,079,234	-		HER17_RS18110	0.77	-1.5
4,079,277	+		HER17_RS18110	0.79	+1.4
4,079,290	+		HER17_RS18110	0.80	-0.5
4,079,409	-		HER17_RS18110	0.84	-0.2
4,079,425	+		HER17_RS18110	0.85	-0.3
4,079,426	-		HER17_RS18110	0.85	-0.6
4,079,426	-		HER17_RS18110	0.85	-0.3
4,079,429	+		HER17_RS18110	0.85	+0.6
4,079,429	+		HER17_RS18110	0.85	-0.0
4,079,429	+		HER17_RS18110	0.85	+0.7
4,079,429	+		HER17_RS18110	0.85	-1.2
4,079,429	+		HER17_RS18110	0.85	+0.2
4,079,430	-		HER17_RS18110	0.85	+0.4
4,079,488	+		HER17_RS18110	0.88	-0.2
4,079,489	-		HER17_RS18110	0.88	+0.7
4,079,489	-		HER17_RS18110	0.88	+0.3
4,079,489	-		HER17_RS18110	0.88	-0.3
4,079,489	-		HER17_RS18110	0.88	+0.0
4,079,489	-		HER17_RS18110	0.88	-0.4
4,079,501	+		HER17_RS18110	0.88	-0.2
4,079,501	+		HER17_RS18110	0.88	-0.1
4,079,501	+		HER17_RS18110	0.88	-0.5
4,079,502	-		HER17_RS18110	0.88	+0.4
4,079,502	-		HER17_RS18110	0.88	-1.1
4,079,510	+		HER17_RS18110	0.88	+1.7
4,079,510	+		HER17_RS18110	0.88	+1.0
4,079,511	-		HER17_RS18110	0.89	-0.6
4,079,511	-		HER17_RS18110	0.89	-0.9
4,079,583	-				+0.4
4,079,598	-				-0.7
4,079,651	+				+0.6
4,079,651	+				-0.2
4,079,651	+				-0.4
4,079,652	-				-0.1
4,079,686	+				+0.0
4,079,687	-				+0.7
4,079,705	+				+0.4
4,079,705	+				+0.1
4,079,708	+				+0.2
4,079,712	+				+0.3
4,079,712	+				+0.1
4,079,712	+				+0.1
4,079,712	+				-0.0
4,079,712	+				+1.1
4,079,712	+				+0.1
4,079,713	-				+0.5
4,079,713	-				+0.7
4,079,713	-				+0.5
4,079,747	+				+0.2
4,079,747	+				+1.1
4,079,747	+				-0.1
4,079,747	+				+0.1
4,079,747	+				+0.2
4,079,748	-				+0.2
4,079,748	-				-0.2
4,079,748	-				+0.9
4,079,765	-				-0.5
4,079,776	-				+0.4
4,079,867	+				-0.4
4,079,867	+				-1.6
4,079,922	+				+0.3
4,079,923	-				+0.2
4,079,975	+				+0.2
4,079,975	+				+0.9
4,079,975	+				-1.1
4,079,976	-				-0.3
4,079,976	-				-0.0
4,080,018	-				+0.5
4,080,038	+		HER17_RS18115	0.11	+1.0
4,080,038	+		HER17_RS18115	0.11	+0.4
4,080,039	-		HER17_RS18115	0.11	+0.2
4,080,039	-		HER17_RS18115	0.11	-0.2
4,080,039	-		HER17_RS18115	0.11	-0.1
4,080,065	+		HER17_RS18115	0.13	+1.2
4,080,065	+		HER17_RS18115	0.13	+1.0
4,080,066	-		HER17_RS18115	0.13	-0.1
4,080,155	+		HER17_RS18115	0.18	+1.1
4,080,155	+		HER17_RS18115	0.18	+0.4
4,080,156	-		HER17_RS18115	0.18	+0.4
4,080,292	+		HER17_RS18115	0.26	-1.4
4,080,346	+		HER17_RS18115	0.29	+0.0
4,080,346	+		HER17_RS18115	0.29	-0.1
4,080,367	+		HER17_RS18115	0.30	-0.8
4,080,367	+		HER17_RS18115	0.30	+0.5
4,080,367	+		HER17_RS18115	0.30	+1.6
4,080,367	+		HER17_RS18115	0.30	+0.0
4,080,368	-		HER17_RS18115	0.30	-0.1
4,080,368	-		HER17_RS18115	0.30	-0.0
4,080,368	-		HER17_RS18115	0.30	-1.0
4,080,411	-		HER17_RS18115	0.32	-0.3
4,080,469	+		HER17_RS18115	0.36	+0.6
4,080,469	+		HER17_RS18115	0.36	+0.1
4,080,470	-		HER17_RS18115	0.36	+0.1
4,080,526	+		HER17_RS18115	0.39	-0.2
4,080,526	+		HER17_RS18115	0.39	+0.4
4,080,548	+		HER17_RS18115	0.40	-0.9
4,080,549	-		HER17_RS18115	0.40	+0.2
4,080,549	-		HER17_RS18115	0.40	+0.0
4,080,549	-		HER17_RS18115	0.40	-0.7
4,080,622	-		HER17_RS18115	0.44	-0.5
4,080,653	-		HER17_RS18115	0.46	-1.5
4,080,653	-		HER17_RS18115	0.46	-2.6
4,080,662	+		HER17_RS18115	0.47	+0.5
4,080,742	+		HER17_RS18115	0.51	-0.7
4,080,767	+		HER17_RS18115	0.53	-0.1
4,080,767	+		HER17_RS18115	0.53	+0.8
4,080,767	+		HER17_RS18115	0.53	+0.6
4,080,768	-		HER17_RS18115	0.53	-0.0
4,080,768	-		HER17_RS18115	0.53	-0.1
4,080,768	-		HER17_RS18115	0.53	-0.3
4,080,794	-		HER17_RS18115	0.54	+0.0