Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14370

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,230,242	+		HER17_RS14365	0.11	-0.1
3,230,243	-		HER17_RS14365	0.11	-0.5
3,230,243	-		HER17_RS14365	0.11	+0.1
3,230,243	-		HER17_RS14365	0.11	+0.6
3,230,298	+		HER17_RS14365	0.16	+0.4
3,230,299	-		HER17_RS14365	0.16	+1.2
3,230,299	-		HER17_RS14365	0.16	+0.4
3,230,299	-		HER17_RS14365	0.16	-0.4
3,230,384	+		HER17_RS14365	0.24	-0.1
3,230,384	+		HER17_RS14365	0.24	+0.7
3,230,384	+		HER17_RS14365	0.24	+0.4
3,230,385	-		HER17_RS14365	0.24	-0.7
3,230,499	+		HER17_RS14365	0.35	-1.6
3,230,499	+		HER17_RS14365	0.35	-0.4
3,230,500	-		HER17_RS14365	0.35	-0.3
3,230,539	+		HER17_RS14365	0.39	+0.1
3,230,540	-		HER17_RS14365	0.39	+0.1
3,230,571	+		HER17_RS14365	0.42	+0.5
3,230,571	+		HER17_RS14365	0.42	+0.2
3,230,571	+		HER17_RS14365	0.42	+0.8
3,230,572	-		HER17_RS14365	0.42	-0.3
3,230,576	-		HER17_RS14365	0.43	+0.6
3,230,638	+		HER17_RS14365	0.49	-0.2
3,230,638	+		HER17_RS14365	0.49	+0.4
3,230,639	-		HER17_RS14365	0.49	+0.5
3,230,639	-		HER17_RS14365	0.49	-1.1
3,230,806	+		HER17_RS14365	0.65	-1.0
3,230,806	+		HER17_RS14365	0.65	+0.8
3,230,806	+		HER17_RS14365	0.65	-0.0
3,230,807	-		HER17_RS14365	0.65	+0.2
3,230,807	-		HER17_RS14365	0.65	+0.2
3,230,807	-		HER17_RS14365	0.65	-0.2
3,230,807	-		HER17_RS14365	0.65	-0.3
3,230,807	-		HER17_RS14365	0.65	-0.2
3,230,809	+		HER17_RS14365	0.65	+0.4
3,230,809	+		HER17_RS14365	0.65	-0.8
3,230,809	+		HER17_RS14365	0.65	-0.4
3,230,809	+		HER17_RS14365	0.65	+1.1
3,230,809	+		HER17_RS14365	0.65	-0.3
3,230,809	+		HER17_RS14365	0.65	+0.2
3,230,809	+		HER17_RS14365	0.65	+0.0
3,230,809	+		HER17_RS14365	0.65	-0.2
3,230,886	+		HER17_RS14365	0.72	-1.8
3,230,887	-		HER17_RS14365	0.72	+0.6
3,230,980	+		HER17_RS14365	0.81	+0.1
3,230,981	-		HER17_RS14365	0.81	-1.1
3,231,010	+		HER17_RS14365	0.84	-0.1
3,231,011	-		HER17_RS14365	0.84	+0.3
3,231,011	-		HER17_RS14365	0.84	-1.2
3,231,025	+		HER17_RS14365	0.85	-0.1
3,231,025	+		HER17_RS14365	0.85	-0.1
3,231,025	+		HER17_RS14365	0.85	-0.2
3,231,026	-		HER17_RS14365	0.86	+0.5
3,231,026	-		HER17_RS14365	0.86	+1.1
3,231,026	-		HER17_RS14365	0.86	-0.9
3,231,026	-		HER17_RS14365	0.86	+0.7
3,231,026	-		HER17_RS14365	0.86	+0.1
3,231,090	+				+0.4
3,231,090	+				-0.1
3,231,099	+				-0.2
3,231,099	+				-0.4
3,231,152	+				-0.2
3,231,152	+				-0.7
3,231,153	-				+0.2
3,231,156	+				-1.0
3,231,156	+				+0.7
3,231,157	-				+1.5
3,231,157	-				+0.8
3,231,175	+				-0.3
3,231,345	-		HER17_RS14370	0.11	-0.3
3,231,345	-		HER17_RS14370	0.11	-0.8
3,231,473	-		HER17_RS14370	0.18	+0.8
3,231,509	+		HER17_RS14370	0.20	-0.1
3,231,509	+		HER17_RS14370	0.20	-0.5
3,231,509	+		HER17_RS14370	0.20	-0.3
3,231,509	+		HER17_RS14370	0.20	-0.7
3,231,509	+		HER17_RS14370	0.20	-0.4
3,231,509	+		HER17_RS14370	0.20	+0.2
3,231,509	+		HER17_RS14370	0.20	-0.9
3,231,509	+		HER17_RS14370	0.20	-0.8
3,231,509	+		HER17_RS14370	0.20	+0.2
3,231,509	+		HER17_RS14370	0.20	-0.0
3,231,509	+		HER17_RS14370	0.20	+0.7
3,231,510	-		HER17_RS14370	0.21	-0.4
3,231,510	-		HER17_RS14370	0.21	+1.0
3,231,510	-		HER17_RS14370	0.21	+0.1
3,231,510	-		HER17_RS14370	0.21	+0.3
3,231,510	-		HER17_RS14370	0.21	-0.6
3,231,510	-		HER17_RS14370	0.21	+0.1
3,231,510	-		HER17_RS14370	0.21	+0.4
3,231,510	-		HER17_RS14370	0.21	-0.6
3,231,510	-		HER17_RS14370	0.21	+0.1
3,231,511	+		HER17_RS14370	0.21	+0.5
3,231,511	+		HER17_RS14370	0.21	+0.5
3,231,511	+		HER17_RS14370	0.21	+0.5
3,231,512	-		HER17_RS14370	0.21	-0.6
3,231,547	+		HER17_RS14370	0.23	+0.1
3,231,548	-		HER17_RS14370	0.23	-0.3
3,231,548	-		HER17_RS14370	0.23	-0.8
3,231,549	+		HER17_RS14370	0.23	+1.2
3,231,588	-		HER17_RS14370	0.25	-0.6
3,231,588	-		HER17_RS14370	0.25	+0.4
3,231,672	-		HER17_RS14370	0.30	+0.2
3,231,677	+		HER17_RS14370	0.30	-0.4
3,231,845	-		HER17_RS14370	0.40	+0.1
3,231,875	-		HER17_RS14370	0.42	-0.9
3,231,893	+		HER17_RS14370	0.43	+0.7
3,231,893	+		HER17_RS14370	0.43	-1.1
3,231,986	+		HER17_RS14370	0.49	-0.2
3,231,987	-		HER17_RS14370	0.49	-0.2
3,231,990	-		HER17_RS14370	0.49	-0.5
3,232,099	+		HER17_RS14370	0.55	-1.8
3,232,192	-		HER17_RS14370	0.61	-0.8
3,232,192	-		HER17_RS14370	0.61	-0.4
3,232,271	+		HER17_RS14370	0.65	+1.3
3,232,272	-		HER17_RS14370	0.65	-0.1
3,232,323	+		HER17_RS14370	0.68	-0.2
3,232,425	+		HER17_RS14370	0.74	-0.5
3,232,426	-		HER17_RS14370	0.74	+0.1
3,232,430	+		HER17_RS14370	0.75	+0.2
3,232,431	-		HER17_RS14370	0.75	-0.6
3,232,431	-		HER17_RS14370	0.75	+0.6
3,232,431	-		HER17_RS14370	0.75	+0.7
3,232,754	+				+0.7
3,232,755	-				+0.8
3,232,755	-				-0.1
3,232,906	+				-0.4
3,232,906	+				+0.3
3,232,937	-				-0.3
3,232,937	-				+0.4
3,232,937	-				-0.7
3,232,937	-				+0.7
3,232,937	-				-0.3
3,233,020	+		HER17_RS14375	0.20	-1.0
3,233,020	+		HER17_RS14375	0.20	-0.1
3,233,159	+		HER17_RS14375	0.40	+1.2
3,233,160	-		HER17_RS14375	0.41	-1.3
3,233,160	-		HER17_RS14375	0.41	-0.2
3,233,194	+		HER17_RS14375	0.46	-0.6
3,233,194	+		HER17_RS14375	0.46	-0.3
3,233,194	+		HER17_RS14375	0.46	+0.2
3,233,326	+		HER17_RS14375	0.65	-0.4
3,233,326	+		HER17_RS14375	0.65	+0.1
3,233,470	-		HER17_RS14375	0.86	+0.9
3,233,470	-		HER17_RS14375	0.86	+0.0
3,233,512	+				+0.9
3,233,513	-				+0.1
3,233,513	-				+0.6
3,233,545	+				-2.2
3,233,545	+				-0.5
3,233,546	-				+3.2
3,233,546	-				+1.1
3,233,546	-				-0.1
3,233,546	-				-0.3
3,233,609	+				-1.3
3,233,610	-				-1.2
3,233,631	-				+0.4
3,233,633	+				-0.4
3,233,633	+				-3.6
3,233,671	-				+0.4
3,233,671	-				+2.4